-
2
-
-
84863737910
-
The differential equation of the distribution of gene frequencies
-
Wright,S. (1945) The differential equation of the distribution of gene frequencies. Proc. Natl Acad. Sci. USA, 31, 382-389.
-
(1945)
Proc. Natl Acad. Sci. USA
, vol.31
, pp. 382-389
-
-
Wright, S.1
-
3
-
-
67849124765
-
-
Watterson,G. (1962) Some theoretical aspects of diffusion theory in population genetics. Ann. Math. Stat., 33, 93-957, Correction: 34, 352.
-
Watterson,G. (1962) Some theoretical aspects of diffusion theory in population genetics. Ann. Math. Stat., 33, 93-957, Correction: 34, 352.
-
-
-
-
4
-
-
84918263048
-
The mean time for absorption in a process of genetic type
-
Ewens,W. (1963) The mean time for absorption in a process of genetic type. J. Austral. Math. Soc., 3, 375-383.
-
(1963)
J. Austral. Math. Soc
, vol.3
, pp. 375-383
-
-
Ewens, W.1
-
7
-
-
13344294354
-
Solving the Fisher-Wright and coalescence problems with a discrete Markov chain analysis
-
Buss,S. and Clote,P. (2005) Solving the Fisher-Wright and coalescence problems with a discrete Markov chain analysis. Adv. Appl. Probab. 36, 1175-1197.
-
(2005)
Adv. Appl. Probab
, vol.36
, pp. 1175-1197
-
-
Buss, S.1
Clote, P.2
-
8
-
-
0000660047
-
Diffusion models in population genetics
-
Kimura,M. (1964) Diffusion models in population genetics. J. Appl. Prob., 1, 177-232.
-
(1964)
J. Appl. Prob
, vol.1
, pp. 177-232
-
-
Kimura, M.1
-
9
-
-
50949133711
-
-
Waldispuhl,J., Devadas,S., Berger,B. and Clote,P. (2008) Efficient algorithms for probing the RNA mutation landscape. PLoS. Comput. Biol., 4, e1000124.
-
Waldispuhl,J., Devadas,S., Berger,B. and Clote,P. (2008) Efficient algorithms for probing the RNA mutation landscape. PLoS. Comput. Biol., 4, e1000124.
-
-
-
-
10
-
-
0037062949
-
The chemical repertoire of natural ribozymes
-
Doudna,J. and Cech,T. (2002) The chemical repertoire of natural ribozymes. Nature, 418, 222-228.
-
(2002)
Nature
, vol.418
, pp. 222-228
-
-
Doudna, J.1
Cech, T.2
-
11
-
-
2342511433
-
New RNA motifs suggest an expanded scope for riboswitches in bacterial genetic control
-
Barrick,J., Corbino,K., Winkler,W., Nabvi,A., Mandal,M., Collins,J., Lee,M., Roth,A., Sudarsan,N., Jona,I. et al. (2004) New RNA motifs suggest an expanded scope for riboswitches in bacterial genetic control. Proc. Natl Acad. Sci. USA, 101, 6421-6426.
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 6421-6426
-
-
Barrick, J.1
Corbino, K.2
Winkler, W.3
Nabvi, A.4
Mandal, M.5
Collins, J.6
Lee, M.7
Roth, A.8
Sudarsan, N.9
Jona, I.10
-
12
-
-
34447309058
-
De novo SVM classification of precursor microRNAs from genomic pseudo hairpins using global and intrinsic folding measures
-
Ng,K.L. and Mishra,S.K. (2007) De novo SVM classification of precursor microRNAs from genomic pseudo hairpins using global and intrinsic folding measures. Bioinformatics, 23, 1321-1330.
-
(2007)
Bioinformatics
, vol.23
, pp. 1321-1330
-
-
Ng, K.L.1
Mishra, S.K.2
-
13
-
-
0345436050
-
Selenocysteine inserting tRNAs: An overview
-
Commans,S. and Böck,A. (1999) Selenocysteine inserting tRNAs: An overview. FEMS Microbiol. Rev., 23, 333-351.
-
(1999)
FEMS Microbiol. Rev
, vol.23
, pp. 333-351
-
-
Commans, S.1
Böck, A.2
-
14
-
-
0027434244
-
Thermal unfolding of a group I ribozyme: The low-temperature transition is primarily disruption of tertiary structure
-
Banerjee,A., Jaeger,J. and Turner,D. (1993) Thermal unfolding of a group I ribozyme: The low-temperature transition is primarily disruption of tertiary structure. Biochemistry, 32, 153-163.
-
(1993)
Biochemistry
, vol.32
, pp. 153-163
-
-
Banerjee, A.1
Jaeger, J.2
Turner, D.3
-
15
-
-
0019876473
-
Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information
-
Zuker,M. and Stiegler,P. (1981) Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information. Nucleic Acids Res., 9, 133-148.
-
(1981)
Nucleic Acids Res
, vol.9
, pp. 133-148
-
-
Zuker, M.1
Stiegler, P.2
-
16
-
-
0033591465
-
Expanded sequence dependence of thermodynamic parameters provides robust prediction of RNA secondary structure
-
Mathews,D., Sabina,J., Zuker,M. and Turner,H. (1999) Expanded sequence dependence of thermodynamic parameters provides robust prediction of RNA secondary structure. J. Mol. Biol., 288, 911-940.
-
(1999)
J. Mol. Biol
, vol.288
, pp. 911-940
-
-
Mathews, D.1
Sabina, J.2
Zuker, M.3
Turner, H.4
-
17
-
-
0042121256
-
Mfold-web-server-for nucleic-acid folding and hybridization prediction
-
Zuker,M. (2003) Mfold-web-server-for nucleic-acid folding and hybridization prediction. Nucleic Acids Res., 31, 3406-3415.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3406-3415
-
-
Zuker, M.1
-
18
-
-
0043123153
-
Vienna RNA secondary structure server
-
Hofacker,I. (2003) Vienna RNA secondary structure server. Nucleic Acids Res., 31, 3429-3431.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3429-3431
-
-
Hofacker, I.1
-
19
-
-
2442626706
-
Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure
-
Mathews,D., Disney,M., Childs,J., Schroeder,S., Zuker,M. and Turner,D. (2004) Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure. Proc. Natl Acad. Sci. USA, 101, 7287-7292.
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 7287-7292
-
-
Mathews, D.1
Disney, M.2
Childs, J.3
Schroeder, S.4
Zuker, M.5
Turner, D.6
-
20
-
-
0346888665
-
A statistical sampling algorithm for RNA secondary structure prediction
-
Ving,Y. and Lawrence,C.E. (2003) A statistical sampling algorithm for RNA secondary structure prediction. Nucleic Acids. Res., 31, 7280-7301.
-
(2003)
Nucleic Acids. Res
, vol.31
, pp. 7280-7301
-
-
Ving, Y.1
Lawrence, C.E.2
-
21
-
-
3242877996
-
Sfold weh server for statistical folding and rational design of nucleic acids
-
Ding,Y., Chan,C. and Lawrence,C. (2004) Sfold weh server for statistical folding and rational design of nucleic acids. Nucleic Acids Res., 32, W135-W141.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Ding, Y.1
Chan, C.2
Lawrence, C.3
-
22
-
-
34548604264
-
Boltzmann probability of RNA structural neighbors and riboswitch detection
-
Freyhult,E., Moulton,V. and Clote,P. (2007) Boltzmann probability of RNA structural neighbors and riboswitch detection. Bioinformatics, 23, 2054-2062.
-
(2007)
Bioinformatics
, vol.23
, pp. 2054-2062
-
-
Freyhult, E.1
Moulton, V.2
Clote, P.3
-
23
-
-
34547566768
-
(1007) RNAbor: A web server. for RNA structural neighbors
-
Freyhult,E, Moulton,V. and Clote,P. (1007) RNAbor: A web server. for RNA structural neighbors. Nucleic Acids Res., 35, W305-W309.
-
Nucleic Acids Res
, vol.35
-
-
Freyhult, E.1
Moulton, V.2
Clote, P.3
-
24
-
-
34248222805
-
Computing the partition function and sampling for saturated secondary structures of RNA, with respect to the Turner energy model
-
Waldispuhl,J. and Clote,P. (2007) Computing the partition function and sampling for saturated secondary structures of RNA, with respect to the Turner energy model. J. Comput. Biol., 14, 190-215.
-
(2007)
J. Comput. Biol
, vol.14
, pp. 190-215
-
-
Waldispuhl, J.1
Clote, P.2
-
25
-
-
0036295198
-
Dynalign: An algorithm for finding the secondary, structure common to two RNA sequences
-
Mathews,D. and Turner,D. (2002) Dynalign: An algorithm for finding the secondary, structure common to two RNA sequences. J. Mol. Biol., 317, 191-203.
-
(2002)
J. Mol. Biol
, vol.317
, pp. 191-203
-
-
Mathews, D.1
Turner, D.2
-
26
-
-
23144449520
-
The FOLDALIGN web server for pairwise structural RNA alignment and mutual motif search
-
Havgaard,J.H., Lyngso,R.B. and Gorodkin,J. (2005) The FOLDALIGN web server for pairwise structural RNA alignment and mutual motif search. Nucleic Acids Res., 33, W650-653.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Havgaard, J.H.1
Lyngso, R.B.2
Gorodkin, J.3
-
27
-
-
4344584927
-
MSARI: Multiple sequence alignments for statistical detection of RNA secondary structure
-
Coventry,A., Kleitman,D. and Berger,B. (2004) MSARI: Multiple sequence alignments for statistical detection of RNA secondary structure. Proc. Natl Acad. Sci. USA, 101, 12102-12107.
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 12102-12107
-
-
Coventry, A.1
Kleitman, D.2
Berger, B.3
-
28
-
-
14044272835
-
Fast and reliable prediction of noncoding RNAs
-
Washietl,S., Hofacker,J. and Stadler,P. (2005) Fast and reliable prediction of noncoding RNAs. Proc. Natl Acad. Sci. USA, 102 2454-2459.
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 2454-2459
-
-
Washietl, S.1
Hofacker, J.2
Stadler, P.3
-
29
-
-
0037252684
-
Rfam: An RNA family database
-
Griffiths-Jones,S., Bateman,A., Marshall,M., Khanna,A. and Eddy,S. (2003) Rfam: An RNA family database. Nucleic Acids Res., 31, 439-441.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 439-441
-
-
Griffiths-Jones, S.1
Bateman, A.2
Marshall, M.3
Khanna, A.4
Eddy, S.5
-
30
-
-
27944461067
-
Exploring the energy landscape of k-point mutagens of RNA
-
Clote,P., Waldispühl,J., Behzadi,B. and Steyaert,J.-M. (2005) Exploring the energy landscape of k-point mutagens of RNA. Bioinformatics, 21, 4140-14147.
-
(2005)
Bioinformatics
, vol.21
, pp. 4140-14147
-
-
Clote, P.1
Waldispühl, J.2
Behzadi, B.3
Steyaert, J.-M.4
-
31
-
-
0019082587
-
Fast algorithm for predicting the secondary structure of single stranded RNA
-
Nussinov,R. and Jacobson,A.B. (1980) Fast algorithm for predicting the secondary structure of single stranded RNA. Proc. Natl Acad. Sci. USA 77, 6309-6313.
-
(1980)
Proc. Natl Acad. Sci. USA
, vol.77
, pp. 6309-6313
-
-
Nussinov, R.1
Jacobson, A.B.2
-
32
-
-
0032552882
-
Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs
-
Xia,T., SantaLucia,J., Burkard,M., Kierzek,R., Schroeder,S., Jiao,X., Cox,C. and Turner,D. (1999) Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs. Biochemistry, 37, 14719-14735.
-
(1999)
Biochemistry
, vol.37
, pp. 14719-14735
-
-
Xia, T.1
SantaLucia, J.2
Burkard, M.3
Kierzek, R.4
Schroeder, S.5
Jiao, X.6
Cox, C.7
Turner, D.8
-
33
-
-
0344289737
-
Thermodynamics of formation of secondary structure in nucleic acids
-
Di Cera,E, ed, Oxford University Press, pp
-
Tinoco,J. Jr. and Schmitz,M. (2000) Thermodynamics of formation of secondary structure in nucleic acids. In Di Cera,E. (ed.), Thermodynamics in Biology. Oxford University Press, pp. 131-176.
-
(2000)
Thermodynamics in Biology
, pp. 131-176
-
-
Tinoco Jr., J.1
Schmitz, M.2
-
34
-
-
0033591465
-
Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure
-
Matthews,D., Sabina,J., Zuker,M. and Turner,D. (1999) Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. J. Mol. Biol., 288, 911-940.
-
(1999)
J. Mol. Biol
, vol.288
, pp. 911-940
-
-
Matthews, D.1
Sabina, J.2
Zuker, M.3
Turner, D.4
-
35
-
-
17744375532
-
An approximate matching algorithm for finding (sub-)optimal sequences in S-attributed grammars
-
Waldispuhl,J., Behzadi,B. and Steyaert,J.M. (2002) An approximate matching algorithm for finding (sub-)optimal sequences in S-attributed grammars. Bioinformatics, 18, S250-S259.
-
(2002)
Bioinformatics
, vol.18
-
-
Waldispuhl, J.1
Behzadi, B.2
Steyaert, J.M.3
-
36
-
-
33748675254
-
An RNA gene expressed during cortical development evolved rapidly in humns
-
Pollard,K.S., Salama,S.R., Lambert,N., Lambot,M.A., Coppens,S., Pedersen,J.S., Katzman,S., King,B., Onodera,C. Siepel,A. et al. (2006) An RNA gene expressed during cortical development evolved rapidly in humns. Nature, 443, 167-172.
-
(2006)
Nature
, vol.443
, pp. 167-172
-
-
Pollard, K.S.1
Salama, S.R.2
Lambert, N.3
Lambot, M.A.4
Coppens, S.5
Pedersen, J.S.6
Katzman, S.7
King, B.8
Onodera, C.9
Siepel, A.10
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