메뉴 건너뛰기




Volumn 35, Issue SUPPL.2, 2007, Pages

RNAbor: A web server for RNA structural neighbors

Author keywords

[No Author keywords available]

Indexed keywords

RNA; UNTRANSLATED RNA;

EID: 34547566768     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkm255     Document Type: Article
Times cited : (16)

References (17)
  • 1
    • 0037062949 scopus 로고    scopus 로고
    • The chemical repertoire of natural ribozymes
    • Doudna, J.A. and Cech, T.R. (2002) The chemical repertoire of natural ribozymes. Nature, 418, 222-228.
    • (2002) Nature , vol.418 , pp. 222-228
    • Doudna, J.A.1    Cech, T.R.2
  • 3
    • 27944493648 scopus 로고    scopus 로고
    • Computational design and experimental validation of oligonucleotide- sensing allosteric ribozymes
    • Penchovsky, R. and Breaker, R.R. (2005) Computational design and experimental validation of oligonucleotide-sensing allosteric ribozymes. Nat. Biotechnol., 23, 1424-1431.
    • (2005) Nat. Biotechnol. , vol.23 , pp. 1424-1431
    • Penchovsky, R.1    Breaker, R.R.2
  • 4
    • 33744790273 scopus 로고    scopus 로고
    • Prediction of RNA secondary structure by free energy minimization
    • Mathews, D.H. and Turner, D.H. (2006) Prediction of RNA secondary structure by free energy minimization. Curr. Opin. Struct. Biol., 16, 270-278.
    • (2006) Curr. Opin. Struct. Biol. , vol.16 , pp. 270-278
    • Mathews, D.H.1    Turner, D.H.2
  • 5
    • 0035656688 scopus 로고    scopus 로고
    • Non-coding RNA genes and the modern RNA world
    • Eddy, S.R. (2001) Non-coding RNA genes and the modern RNA world. Nat. Rev. Genet., 2, 919-929.
    • (2001) Nat. Rev. Genet. , vol.2 , pp. 919-929
    • Eddy, S.R.1
  • 6
    • 0346888665 scopus 로고    scopus 로고
    • A statistical sampling algorithm for RNA secondary structure prediction
    • Ding, Y. and Lawrence, C.E. (2003) A statistical sampling algorithm for RNA secondary structure prediction. Nucleic Acids Res., 31, 7280-7301.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 7280-7301
    • Ding, Y.1    Lawrence, C.E.2
  • 7
    • 23644448438 scopus 로고    scopus 로고
    • RNA secondary structure prediction by centroids in a Boltzmann weighted ensemble
    • Ding, Y., Chan, C.Y. and Lawrence, C.E. (2005) RNA secondary structure prediction by centroids in a Boltzmann weighted ensemble. RNA, 11, 1157-1166.
    • (2005) RNA , vol.11 , pp. 1157-1166
    • Ding, Y.1    Chan, C.Y.2    Lawrence, C.E.3
  • 8
    • 0025264854 scopus 로고
    • The equilibrium partition function and base pair binding probabilities for RNA secondary structures
    • McCaskill, J.S. (1990) The equilibrium partition function and base pair binding probabilities for RNA secondary structures. Biopolymers, 29, 1105-1119.
    • (1990) Biopolymers , vol.29 , pp. 1105-1119
    • McCaskill, J.S.1
  • 9
    • 0033080745 scopus 로고    scopus 로고
    • Complete suboptimal folding of RNA and the stability of secondary structures
    • Wuchty, S., Fontana, W., Hofacker, I.L. and Schuster, P. (1999) Complete suboptimal folding of RNA and the stability of secondary structures. Biopolymers, 49, 145-164.
    • (1999) Biopolymers , vol.49 , pp. 145-164
    • Wuchty, S.1    Fontana, W.2    Hofacker, I.L.3    Schuster, P.4
  • 11
    • 32544440797 scopus 로고    scopus 로고
    • RNAshapes: An integrated RNA analysis package based on abstract shapes
    • Steffen, P., Voss, B., Rehmsmeier, M., Reeder, J. and Giegerich, R. (2006) RNAshapes: an integrated RNA analysis package based on abstract shapes. Bioinformatics, 22, 500-503.
    • (2006) Bioinformatics , vol.22 , pp. 500-503
    • Steffen, P.1    Voss, B.2    Rehmsmeier, M.3    Reeder, J.4    Giegerich, R.5
  • 12
    • 33745087121 scopus 로고    scopus 로고
    • Complete probabilistic analysis of RNA shapes
    • Voss, B., Giegerich, R. and Rehmsmeier, M. (2006) Complete probabilistic analysis of RNA shapes. BMC Biol., 4, 5.
    • (2006) BMC Biol. , vol.4 , pp. 5
    • Voss, B.1    Giegerich, R.2    Rehmsmeier, M.3
  • 13
    • 0035486783 scopus 로고    scopus 로고
    • Nucleic acid and polypeptide aptamers: A powerful approach to ligand discovery
    • James, W. (2001) Nucleic acid and polypeptide aptamers: a powerful approach to ligand discovery. Curr. Opin. Pharmacol., 1, 540-548.
    • (2001) Curr. Opin. Pharmacol. , vol.1 , pp. 540-548
    • James, W.1
  • 15
    • 0033591465 scopus 로고    scopus 로고
    • Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure
    • Matthews, D.H., Sabina, J., Zuker, M. and Turner, D.H. (1999) Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. J. Mol. Biol., 288, 911-940.
    • (1999) J. Mol. Biol. , vol.288 , pp. 911-940
    • Matthews, D.H.1    Sabina, J.2    Zuker, M.3    Turner, D.H.4
  • 16
    • 0032552882 scopus 로고    scopus 로고
    • Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs
    • Xia, T., SantaLucia, J. Jr, Burkard, M.E., Kierzek, R., Schroeder, S.J., Jiao, X., Cox, C. and Turner, D.H. (1998) Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs. Biochemistry, 37, 14719-14735.
    • (1998) Biochemistry , vol.37 , pp. 14719-14735
    • Xia, T.1    SantaLucia Jr., J.2    Burkard, M.E.3    Kierzek, R.4    Schroeder, S.J.5    Jiao, X.6    Cox, C.7    Turner, D.H.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.