Development of a multiplex PCR assay for photobacterium damselae subsp. piscicida identification in fish samples

Journal of Fish Diseases

Volumn 32, Issue 8, 2009, Pages 645-653

  Amagliani, G ^a   Omiccioli, E ^a,b   Andreoni, F ^a   Boiani, R ^a   Bianconi, I ^a   Zaccone, R ^c   Mancuso, M ^c   Magnani, M ^a  

^a UNIVERSITY OF URBINO   (Italy)

^b Università di Urbino ^*  (Italy)

^c CNR   (Italy)

Author keywords

Fish; Internal amplification control; Multiplex polymerase chain reaction; Penicillin binding protein 1A gene; Photobacterium damselae subsp. piscicida

Indexed keywords

OLIGONUCLEOTIDE;

ANIMAL; ARTICLE; BASS; DNA SEQUENCE; GENETICS; METHODOLOGY; MICROBIOLOGY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHOTOBACTERIUM; POLYMERASE CHAIN REACTION; SENSITIVITY AND SPECIFICITY; SEQUENCE ALIGNMENT;

ANIMALS; BASE SEQUENCE; BASS; MOLECULAR SEQUENCE DATA; OLIGONUCLEOTIDES; PHOTOBACTERIUM; POLYMERASE CHAIN REACTION; SENSITIVITY AND SPECIFICITY; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA;

PHOTOBACTERIUM DAMSELAE; PHOTOBACTERIUM DAMSELAE SUBSP. PISCICIDA; SERRANIDAE;

EID: 67651207817     PISSN: 01407775     EISSN: 13652761     Source Type: Journal    
DOI: 10.1111/j.1365-2761.2009.01027.x     Document Type: Article

References (28)

1. Altschul S.F., Madden T.L., Schäffer A.A., Zhang J., Zhang Z., Miller W. Lipman D.J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research 25, 3389 3402.
2. Aoki T., Hirono I. Hayashi A. (1995) The fish-pathogenic bacterium Pasteurella piscicida detected by the polymerase chain reaction (PCR). In : Diseases in Asian Aquaculture (ed. by M. Shariff, J.R. Arthur R.P. Subasinghe pp. 347 353. Fish Health Section, Asian Fisheries Society, Manila.
3. Aoki T., Ikeda D., Katagiri T. Hirono I. (1997) Rapid detection of the fish pathogenic bacterium Pasteurella piscicida by polymerase chain reaction targeting nucleotide sequences of the species-specific plasmid pZP1. Fish Pathology 32, 143 151. (Pubitemid 127345078)
4. Botella S., Pujalte M.-J., Macián M.-C., Ferrú M.-A., Hernández S.J. Garay E. (2002) Amplified fragment length polymorphism (AFLP) and biochemical typing of Photobacterium damselae subsp. damselae. Journal of Applied Microbiology 93, 681 688.
5. Casabianca A., Orlandi C., Fraternale A. Magnani M. (2003) A new one-step RT-PCR method for virus quantification in murine AIDS. Journal of Virological Methods 110, 81 90.
6. Dalla Valle L., Zanella L., Belvedere P. Colombo L. (2002) Use of random amplification to develop a PCR detection method for the causative agent of fish pasteurellosis, Photobacterium damselae subsp. piscicida (Vibrionaceae). Aquaculture 207, 187 202.
7. Di Giulmi A.M., Dessen A., Dideberg O. Vernet T. (2002) Bifunctional penicillin-binding proteins: focus on the glycosyltransferase domain and its specific inhibitor moenomycin. Current Pharmaceutical Biotechnology 3, 63 75.
8. Gauthier G., Lafay B., Ruimy R., Breittmayer V., Nicolas J.L., Gauthier M. Christen R. (1995) Small-subunit rRNA sequences and whole DNA relatedness concur for the reassignment of Pasteurella piscicida (Snieszko et al.) Janssen and Surgalla to the genus Photobacterium as Photobacterium damsela subsp. piscicida comb. nov. International Journal of Systematic Bacteriology 45, 139 144.
9. Hoorfar J., Cook N., Malorny B., Wagner M., De Medici D., Abdulmawjood A. Fach P. (2003) Making internal amplification control mandatory for diagnostic PCR. Journal of Clinical Microbiology 41, 5835.
10. Kanki M., Tomoko Y., Teizo T. Eiichiroh B. (2007) Histidine decarboxylases and their role in accumulation of histamine in tuna and dried saury. Applied and Environmental Microbiology 73, 1467 1473.
11. Königsson M.H., Ballagi A., Jansson E. Johansson K.-E. (2005) Detection of Renibacterium salmoninarum in tissue samples by sequence capture and fluorescent PCR based on the 16S rRNA gene. Veterinary Microbiology 105, 235 243.
12. Kunikazu Y., Asato J., Kawade N., Takahashi H., Kimura B. Arakawa Y. (2004) Two cases of fatal necrotizing fasciitis caused by Photobacterium damsela in Japan. Journal of Clinical Microbiology 42, 1370 1372.
13. Lores F., Magariños B., Osorio C.R., Toranzo A.E. Romalde J.L. (1998) Accuracy of the AQUAEIA kit (BIONOR AS) for the detection of the pasteurellosis agent in diseased and carrier fish. In : Abstracts of the 3rd International Symposium on Aquatic Animal Health, abstract no.S 1-5. American Fisheries Society, Baltimore, MD.
14. Magariños B., Romalde J.L., Bandín I., Fouz B. Toranzo A.E. (1992) Phenotypic, antigenic, and molecular characterization of Pasteurella piscicida strains isolated from fish. Applied and Environmental Microbiology 58, 3316 3322.
15. Magariños B., Romalde J.L., Barja J.L. Toranzo A.E. (1994) Evidence of a dormant but infective state of the fish pathogen Pasteurella piscicida in seawater and sediment. Applied and Environmental Microbiology 60, 180 186.
16. Magariños B., Toranzo A.E. Romalde J.L. (1996) Phenotypic and pathobiological characteristics of Pasteurella piscicida. Annual Review of Fish Diseases 6, 41 64.
17. Osorio C.R., Collins M.D., Toranzo A.E., Barja J.L. Romalde J.L. (1999) 16S rRNA gene sequence analysis of Photobacterium damselae and nested PCR method for rapid detection of the causative agent of fish pasteurellosis. Applied and Environmental Microbiology 65, 2942 2946.
18. Osorio C.R., Toranzo A.E., Romalde J.L. Barja J.L. (2000) Multiplex PCR assay for ureC and 16S rRNA genes clearly discriminates between both subspecies of Photobacterium damselae. Diseases of Aquatic Organisms 40, 177 183.
19. Rajan P.R., Lin J.H., Ho M.S. Yang H.L. (2003) Simple and rapid detection of Photobacterium damselae ssp. piscicida by a PCR technique and plating method. Journal of Applied Microbiology 95, 1375 1380.
20. Romalde J.L. (2002) Photobacterium damselae subsp. piscicida: an integrated view of a bacterial fish pathogen. International Microbiology 5, 3 9.
21. Romalde J.L., Magariños B., Fouz B., Bandín I., Núnez S. Toranzo A.E. (1995) Evaluation of BIONOR mono-kits for rapid detection of bacterial fish pathogens. Diseases of Aquatic Organisms 21, 25 34.
22. Salzberg S.L., Delcher A.L., Kasif S. White O. (1998) Microbial gene identification using interpolated Markov models. Nucleic Acids Research 26, 544 548.
23. Sambrook J. Russel D.W. (2001) Molecular Cloning: A Laboratory Manual, 3rd edn. Cold Spring Harbor Press, Cold Spring Harbor, NY.
24. Shin J.D., Shin M.G., Suh S.P., Ryang D.W., Rew J.S. Nolte F.S. (1996) Primary Vibrio damsela septicemia. Clinical Infectious Disease 22, 856 857.
25. Snieszko S.F., Bullock G.L., Hollis E. Boone J.G. (1964) Pasteurella sp. from an epizootic of white perch (Roccus americanus) in Chesapeake Bay tidewater areas. Journal of Bacteriology 88, 1814 1815.
26. Thyssen A., Grisez L., van Houdt R. Ollevier F. (1998) Phenotypic characterization of the marine pathogen Photobacterium damselae subsp. piscicida. International Journal of Systematic Bacteriology 48, 1145 1151.
27. Toranzo A.E., Barreiro S., Casal J.F., Figueras A., Magariños B. Barja J. (1991) Pasteurellosis in cultured gilthead seabream (Sparus aurata): first report in Spain. Aquaculture 99, 1 15.
28. Zhao J. Aoki T. (1989) A specific DNA hybridization probe for detection of Pasteurella piscicida. Diseases of Aquatic Organisms 7, 203 210.