Metabolic rhythms of the cyanobacterium cyanothece sp. ATCC 51142 correlate with modeled dynamics of circadian clock

Journal of Biological Rhythms

Volumn 24, Issue 4, 2009, Pages 295-303

  Červený, Jan ^a   Nedbal, Ladislav ^a,b,c  

^a INSTITUTE OF MATHEMATICS   (Czech Republic)

^b Photon Systems Instruments   (Czech Republic)

^c INSTITUTE OF LANDSCAPE ECOLOGY   (Czech Republic)

Author keywords

Circadian clock; Cyanobacteria; Model; Photosynthesis; Respiration

Indexed keywords

CHLOROPHYLL; GLYCOGEN; HYDROCARBON; NITROGEN; OXYGEN;

ARTICLE; BACTERIAL GROWTH; BACTERIAL METABOLISM; BIOREACTOR; CATABOLISM; CIRCADIAN RHYTHM; CYANOBACTERIUM; CYANOTHECE; MODEL; NITROGEN FIXATION; NONHUMAN; OXYGEN CONSUMPTION; PHOTOSYNTHESIS; PREDICTION; PRIORITY JOURNAL; SYNECHOCOCCUS ELONGATUS;

BIOLOGICAL CLOCKS; CARBON DIOXIDE; CIRCADIAN RHYTHM; COMPUTER SIMULATION; CYANOTHECE; DARKNESS; LIGHT; MODELS, BIOLOGICAL; OXYGEN; PHOTOPERIOD;

CYANOBACTERIA; CYANOTHECE; CYANOTHECE SP. ATCC 51142; SYNECHOCOCCUS ELONGATUS;

EID: 67651166875     PISSN: 07487304     EISSN: 15524531     Source Type: Journal    
DOI: 10.1177/0748730409338367     Document Type: Article

References (31)

1. Adams DG (2000) Heterocyst formation in cyanobacteria. Curr Opin Microbiol 3: 618-624.
2. Berman-Frank I., Lundgren P., and Falkowski P. (2003) Nitrogen fixation and photosynthetic oxygen evolution in cyanobacteria. Res Microbiol 154: 157-164.
3. Bird RE and Riordan C. (1986) Simple solar spectral model for direct and diffuse irradiance on horizontal and tilted planes at the Earth's surface for cloudless atmospheres. J Appl Meteorol 25: 87-97.
4. Böhme H. (1998) Regulation of nitrogen fixation in heterocyst-forming cyanobacteria. Trends Plant Sci 3: 346-351.
5. Červený J., Åetlik I., Trtilek M., and Nedbal L. (2009) Photobioreactor for cultivation and real-time, in-situ measurement of O2 and CO2 exchange rates, growth dynamics, and of chlorophyll fluorescence emission of photoautotrophic microorganisms. Eng Life Sci 9: i3.
6. Chisti Y. (2007) Biodiesel from microalgae. Biotechnol Adv 25: 294-306.
7. Ditty JL, Mackey SR, and Johnson CH (2009) Bacterial Circadian Programs. Berlin: Springer.
8. Ditty JL, Williams SB, and Golden SS (2003) A cyanobacterial circadian timing mechanism. Annu Rev Genet 37: 513-543.
9. Dong G. and Golden SS (2008) How a cyanobacterium tells time. Curr Opin Microbiol 11: 541-546.
10. Fay P. (1992) Oxygen relations of nitrogen fixation in cyanobacteria. Microbiol Rev 56: 340-373.
11. Gallon JR (1992) Reconciling the incompatible-N2 fixation and O2. New Phytol 122: 571-609.
12. Ishiura M., Kutsuna S., Aoki S., Iwasaki H., Andersson CR, Tanabe A., Golden SS, Johnson CH, and Kondo T. (1998) Expression of a gene cluster kaiABC as a circadian feedback process in cyanobacteria. Science 281: 1519-1523.
13. Iwasaki H., Williams SB, Kitayama Y., Ishiura M., Golden SS, and Kondo T. (2000) A KaiC-interacting sensory histidine kinase, sasA, necessary to sustain robust circadian oscillation in cyanobacteria. Cell 101: 223-233.
14. Johnson CH, Egli M., and Stewart PL (2008) Structural insights into a circadian oscillator. Science 322: 697-701.
15. Johnson CH and Golden SS (1999) Circadian programs in cyanobacteria: Adaptiveness and mechanism. Annu Rev Microbiol 53: 389.
16. Mackey SR and Golden SS (2007) Winding up the cyanobacterial circadian clock. Trends Microbiol 15: 381-388.
17. Meunier PC, Colon-Lopez MS, and Sherman LA (1998) Photosystem II cyclic heterogeneity and photoactivation in the diazotrophic, unicellular cyanobacterium Cyanothece species ATCC 51142. Plant Physiol 116: 1551-1562.
18. Miyoshi F., Nakayama Y., Kaizu K., Iwasaki H., and Tomita M. (2007) A mathematical model for the Kai-protein-based chemical oscillator and clock gene expression rhythms in cyanobacteria. J Biol Rhythms 22: 69-80.
19. Mori T., Williams DR, Byrne MO, Qin X., Egli M., McHaourab HS, Stewart PL, and Johnson CH (2007) Elucidating the ticking of an in vitro circadian clockwork. PLoS Biol 5: e93.
20. Nedbal L., Trtilek M., Červený J., Komarek O., and Pakrasi HB (2008) A photobioreactor system for precision cultivation of photoautotrophic microorganisms and for high-content analysis of suspension dynamics. Biotechnol Bioeng 100: 902-910.
21. Ort DR and Yocum CF (1996) Oxygenic Photosynthesis: The Light Reactions. Dordrecht: Kluwer Academic Publishers.
22. Provasoli L., McLaughlin JJA, and Droop MR (1957) The development of artificial media for marine algae. Arch Mikrobiol 25: 392-428.
23. Rust MJ, Markson JS, Lane WS, Fisher DS, and O'Shea EK (2007) Ordered phosphorylation governs oscillation of a three-protein circadian clock. Science 318: 809-812.
24. Schmetterer G. and Pils D. (2004) Cyanobacterial respiration. In Respiration in Archaea and Bacteria: Diversity of Prokaryotic Respiratory Systems, Zannoni D, ed, p 310, Dordrecht, Kluwer Academic Publishers.
25. Schneegurt MA, Sherman DM, and Sherman LA (1997 a) Growth, physiology, and ultrastructure of a diazotrophic cyanobacterium, Cyanothece sp. strain ATCC 51142, in mixotrophic and chemoheterotrophic cultures. J Phycol 33: 632-642.
26. Schneegurt MA, Sherman DM, and Sherman LA (1997 b) Composition of the carbohydrate granules of the cyanobacterium, Cyanothece sp. strain ATCC 51142. Arch Microbiol 167: 89-98.
27. Sherman LA, Meunier P., and Colon-Lopez MS (1998) Diurnal rhythms in metabolism: A day in the life of a unicellular, diazotrophic cyanobacterium. Photosynth Res 58: 25-42.
28. Takashi Osanai Mikt (2008) Group 2 sigma factors in cyanobacteria. Physiol Plant 133: 490-506.
29. Tsinoremas NF, Ishiura M., Kondo T., Anderson CR, Tanaka K., Takahashi H., Johnson CH, and Golden SS (1996) A sigma factor that modifies the circadian expression of a subset of genes in cyanobacteria. EMBO J 15: 2488-2495.
30. van Baalen C. (1962) Studies on marine blue-green algae. Bot Mar 4: 129-139.
31. van Zon JS, Lubensky DK, Altena PRH, and ten Wolde PR (2007) An allosteric model of circadian KaiC phosphorylation. Proc Natl Acad Sci U S A 104: 7420-7425.