Population structure of Helicobacter pylori among ethnic groups in Malaysia: Recent acquisition of the bacterium by the Malay population

BMC Microbiology

Volumn 9, Issue , 2009, Pages

  Tay, Chin Yen ^a   Mitchell, Hazel ^a   Dong, Quanjiang ^a   Goh, Khean Lee ^b   Dawes, Ian W ^a   Lan, Ruiting ^a  

^a UNIVERSITY OF NEW SOUTH WALES   (Australia)

^b Faculty of Allied Health Sciences   (Malaysia)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATE; CHINESE; DNA POLYMORPHISM; ETHNIC GROUP; GENETIC VARIABILITY; HELICOBACTER PYLORI; INDIA; MALAYSIA; MULTILOCUS SEQUENCE TYPING; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; POPULATION STRUCTURE; STRUCTURE ANALYSIS; UNINDEXED SEQUENCE; BACTERIAL GENE; BACTERIUM IDENTIFICATION; BIOLOGY; CLASSIFICATION; GENETIC POLYMORPHISM; GENETICS; HELICOBACTER INFECTION; HUMAN; ISOLATION AND PURIFICATION; MICROBIOLOGY; MIGRATION; MOLECULAR GENETICS; POPULATION GENETICS;

BACTERIA (MICROORGANISMS); HELICOBACTER PYLORI;

BACTERIAL DNA;

BACTERIAL TYPING TECHNIQUES; COMPUTATIONAL BIOLOGY; DNA, BACTERIAL; EMIGRATION AND IMMIGRATION; ETHNIC GROUPS; GENES, BACTERIAL; GENETICS, POPULATION; HELICOBACTER INFECTIONS; HELICOBACTER PYLORI; HUMANS; MALAYSIA; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYMORPHISM, GENETIC;

EID: 67651146915     PISSN: 14712180     EISSN: 14712180     Source Type: Journal    
DOI: 10.1186/1471-2180-9-126     Document Type: Article

References (40)

1. Helicobacter pylori virulence and genetic geography. A Covacci JL Telford GD Giudice J Parsonnet R Rappuoli, Science 1999 284 1328 1333 10334982
2. An African origin for the intimate association between humans and Helicobacter pylori. B Linz F Balloux Y Moodley A Manica H Liu P Roumagnac D Falush C Stamer F Prugnolle SW van der Merwe Y Yamaoka DY Graham E Perez-Trallero T Wadstrom S Suerbaum M Achtman, Nature 2007 445 915 918 17287725
3. The epidemiology of Helicobacter pylori. HM Mitchell, Gastroduodenal disease and Helicobacter pylori: Pathophysiology, Diagnosis and Treatment Heidelberg: Springer Verlag, Nedrud JG, Westblom U, Czinn S, 1998 11 30
4. Quasispecies development of Helicobacter pylori observed in paired Isolates obtained years apart from the same host. EJ Kuipers DA Israel JG Kusters MM Gerrits J Weel A van der Ende RWM van der Hulst HP Wirth JH Höök-Nikanne SA Thompson, J Infect Dis 2000 181 273 282 10608776
5. The prevalence of Helicobacter pylori in different countries. RR Pounder, Aliment Pharmacol Ther 1995 9 33 40 8547526
6. The incidence of Helicobacter pylori infection. JE Parsonnet, Aliment Pharmacol Ther 1995 9 45 52 8547528
7. Analysis of genetic diversity in cytotoxin-producing and non-cytotoxin-producing Helicobacter pylori strains. JA Garner C TL, J Infect Dis 1995 172 290 293 7797934
8. cagA-Positive Helicobacter pylori Populations in China and The Netherlands Are Distinct. A van der Ende Z-J Pan A Bart RWM van der Hulst M Feller S-D Xiao GNJ Tytgat J Dankert, Infect Immun 1998 66 1822 1826 9573056
9. Genotyping of Helicobacter pylori isolates by sequencing of PCR products and comparison with the RAPD technique. I Kansau J Raymond E Bingen P Courcoux N Kalach M Bergeret N Braimi C Dupont L A, Res Microbiol 1996 147 661 669 9157493
10. Recombination and clonal groupings within Helicobacter pylori from different geographical regions. M Achtman T Azuma DE Berg Y Ito G Morelli Z-J Pan S Suerbaum SA Thompson A van der Ende L-J van Doorn, Mol Microbiol 1999 32 459 470 10320570
11. Recombination and mutation during long-term gastric colonization by Helicobacter pylori: estimates of clock rates, recombination size, and minimal age. D Falush C Kraft NS Taylor P Correa JG Fox M Achtman S Suerbaum, Proc Natl Acad Sci USA 2001 98 15056 15061 11742075
12. Traces of human migrations in Helicobacter pylori populations. D Falush T Wirth B Linz JK Pritchard M Stephens M Kidd MJ Blaser DY Graham S Vacher GI Perez-Perez, Science 2003 299 1582 1585 12624269
13. Amelioration of bacterial genomes: rates of change and exchange. JG Lawrence O H, J Mol Evol 1997 44 383 397 9089078
14. The Population of the Malay Peninsula: A Study in Human Migration. CA Vlieland, Geogr Rev 1934 24 61 78
15. The search for the 'origins' of Melayu. LY Andaya, J Southeast Asian Stud 2001 32 315 330
16. The meaning and measurement of Ethnicity in Malaysia: an analysis of census classifications. C Hirschman, J Asian Stud 1987 46 555 582
17. Phylogeography and ethnogenesis of aboriginal Southeast Asians. C Hill P Soares M Mormina V Macaulay W Meehan J Blackburn D Clarke JM Raja P Ismail D Bulbeck S Oppenheimer M Richards, Mol Biol Evol 2006 23 2480 2491 16982817
18. Science, medicine, and the future Helicobacter pylori and gastric diseases. MJ Blaser, Br Med J 1998 316 1507 1510
19. Ancestral European roots of Helicobacter pylori in India. SM Devi I Ahmed P Francalacci MA Hussain Y Akhter A Alvi LA Sechi F Megraud N Ahmed, BMC Genomics 2007 8 184 17584914
20. Helicobacter pylori the size of the problem. J Parsonnet, Gut 1998 43 S6 S9 9764031
21. The racial cohort phenomenon: seroepidemiology of Helicobacter pylori infection in a multiracial South-East Asian country. KL Goh N Parasakthi, Eur J Gastroenterol Hepatol 2001 13 177 183 11246618
22. Prevalence and ethnic distribution of Helicobacter pylori infection among endoscoped patients in north eastern peninsular Malaysia. G Kaur NN Naing, Malaysian J Med Sci 2003 10 66 70
23. Seroprevalence of Helicobacter pylori infection in Malaysian children: evidence for ethnic differences in childhood. CC Boey KL Goh WS Lee N Parasakthi, J Paediatr Child Health 1999 35 151 152 10365351
24. Ethnicity and Helicobacter pylori as risk factors for gastric cancer in Malaysia: A prospective case control study. KL Goh PL Cheah N Md KF Quek N Parasakthi, Am J Gastroenterol 2007 102 40 45 17100981
25. Inference of population structure using multilocus genotype data. JK Pritchard M Stephens P Donnelly, Genetics 2000 155 945 959 10835412
26. Distribution of Helicobacter pylori cagA, cagE and vacA in different ethnic groups in Kuala Lumpur, Malaysia. HJ Tan AM Rizal MY Rosmadi KL Goh, J Gastroenterol Hepatol 2005 20 589 594 15836708
27. Distinct cagA EPIYA motifs are associated with ethnic diversity in Malaysia and Singapore. H-MA Schmidt KL Goh KM Fock I Hilmi S Dhamodaran D Forman H Mitchell, Helicobacter 2009
28. Glucose-6-phosphate dehydrogenase (G6PD) variants in Malaysian Malays. O Ainoon YH Yu AL Amir Muhriz NY Boo SK Cheong NH Hamidah, Hum Mutat 2003 21 101 12497642
29. Thoughts about populations with unexpected low prevalences of Helicobacter pylori infection. DY Graham Y Yamaoka HM Malaty, Trans R Soc Trop Med Hyg 2007 101 849 851 17658569
30. The Chinese in contemporary Malaysia. TC Kiong, Race, Ethnicity, and the State in Malaysia and singapore Leiden: Koninlijke Brill NV, Fee LK, 1996 95 119
31. mtDNA variation predicts population size in humans and reveals a major southern Asian chapter in human prehistory. QD Atkinson RD Gray AJ Drummond, Mol Biol Evol 2008 25 468 474 18093996
32. Did Early Humans Go North or South? P Forster S Matsumura, Science 2005 308 965 966 15890867
33. Single, Rapid Coastal Settlement of Asia Revealed by Analysis of Complete Mitochondrial Genomes. V Macaulay C Hill A Achilli C Rengo D Clarke W Meehan J Blackburn O Semino R Scozzari F Cruciani A Taha NK Shaari JM Raja P Ismail Z Zainuddin W Goodwin D Bulbeck H-J Bandelt S Oppenheimer A Torroni M Richards, Science 2005 308 1034 1036 15890885
34. A New History of India. S Wolpert, New York: Oxford University Press 7 2003
35. Distinguishing Human Ethnic Groups by Means of Sequences from Helicobacter pylori: Lessons from Ladakh. T Wirth X Wang B Linz RP Novick JK Lum M Blaser G Morelli D Falush M Achtman FM Salzano, Proc Natl Acad Sci USA 2004 101 4746 4751 15051885
36. Helicobacter pylori: recombination, population structure and human migrations. S Suerbaum M Achtman, Int J Med Microbiol 2004 294 133 139 15493823
37. CONSED A graphical tool for sequence finishing. D Gordon C Abajian P Green, Genome Res 1998 8 195 202 9521923
38. GCG. R Dolz, Computer Analysis Of Sequence Data, Methods In Molecular Biology Totpwa, NJ: Humana, Griffin AM, Griffin HG, 1994 9 17
39. MULTICOMP: a program for preparing sequence data for phylogenetic analysis. PR Reeves L Farnell R Lan, Bioinformatics 1994 10 281 284
40. PHYLIP-phylogeny inference package. J Felsenstein, Cladistics 1989 5 164 166