Mining the genome sequence for novel enzyme activity: Characterisation of an unusual member of the hormone-sensitive lipase family of esterases from the genome of Streptomyces coelicolor A3 (2)

Protein Engineering, Design and Selection

Volumn 22, Issue 6, 2009, Pages 333-339

  Soror, Sameh H ^a,b   Rao, Ren ^a   Cullum, John ^a  

^a University of Koblenz Landau   (Germany)

^b HELWAN UNIVERSITY   (Egypt)

Author keywords

(HSL) family; Esterases; Genome sequence; Streptomyces coelicolor; Thermostability

Indexed keywords

(HSL) FAMILY; ESTERASES; GENOME SEQUENCE; STREPTOMYCES COELICOLOR; THERMOSTABILITY;

AMINATION; AMINES; AMINO ACIDS; ENZYMES; ESCHERICHIA COLI; ESTERIFICATION; ESTERS; LIPASES; MINING; ORGANIC ACIDS; THREE DIMENSIONAL;

ENZYME ACTIVITY;

4 NITROPHENOL; ACETATE ESTER; BUTYRIC ACID; CAPROATE ESTER; ESTER DERIVATIVE; ESTERASE; HORMONE SENSITIVE LIPASE; POLYHISTIDINE TAG; UNCLASSIFIED DRUG; BACTERIAL PROTEIN; CARBOXYLESTERASE; CHOLESTEROL ESTERASE; ESTA PROTEIN, BACTERIA; HYBRID PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; BACTERIAL GENE; BACTERIAL GENOME; CONTROLLED STUDY; DATA BASE; ENZYME ACTIVITY; ENZYME PURIFICATION; ENZYME SPECIFICITY; ESCHERICHIA COLI; EST A GENE; GENE EXPRESSION; HORMONE SENSITIVITY; HYDROLYSIS; MOLECULAR CLONING; NONHUMAN; PRIORITY JOURNAL; SITE DIRECTED MUTAGENESIS; STREPTOMYCES; STREPTOMYCES AVERMITILIS; STREPTOMYCES COELICOLOR; THERMOSTABILITY; CHEMISTRY; DNA SEQUENCE; ENZYME STABILITY; ENZYMOLOGY; GENETICS; METABOLISM; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PROTEIN DATABASE; PROTEIN MOTIF; TEMPERATURE;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; STREPTOMYCES; STREPTOMYCES AVERMITILIS; STREPTOMYCES COELICOLOR;

AMINO ACID MOTIFS; AMINO ACID SEQUENCE; BACTERIAL PROTEINS; CARBOXYLIC ESTER HYDROLASES; CONSERVED SEQUENCE; DATABASES, PROTEIN; ENZYME STABILITY; ESCHERICHIA COLI; MOLECULAR SEQUENCE DATA; MUTAGENESIS, SITE-DIRECTED; RECOMBINANT FUSION PROTEINS; SEQUENCE ANALYSIS, DNA; STEROL ESTERASE; STREPTOMYCES COELICOLOR; TEMPERATURE;

EID: 67651115874     PISSN: 17410126     EISSN: 17410134     Source Type: Journal    
DOI: 10.1093/protein/gzp009     Document Type: Article

References (42)

1. Abramic,M., Lešcic,I., Korica,T., Vitale,L., Saenger,W. and Pigac,J. (1999) Enzyme Microb. Technol., 25, 522-529.
2. Altschul,S.F., Madden,T.L., Schäffer,A.A., Zhang,J., Zhang,Z., Miller,W. and Lipman,D.J. (1997) Nucleic acids Res., 25, 3389-3402.
3. Arnold,K., Bordoli,L., Kopp,J. and Schwede,T. (2006) Bioinformatics, 22, 195-201.
4. Arpigny,J.L. and Jaeger,K.-E. (1999) Biochem. J., 343, 177-183.
5. Barbier,M., Prevot,P. and Soyer-Gobillard,M.-O. (2000) Int. Microbiol., 3, 117-123.
6. Benkert,P., Tosatto,S.E. and Schomburg,D. (2008) Protein Struct. Funct. Bioinformat., 71, 261-277.
7. Benson,D.A., Karsch-Mizrachi,I., Lipman,D.J., Ostell,J. and Wheeler,D.L. (2006) Nucleic Acids Res., 1, D16-D20.
8. Bentley,S., et al. (2002) Nature, 417, 141-147.
9. Bradford,M.M. (1976) Anal. Biochem., 72, 248-254.
10. Bullock,W.O., Fernandez,J.M. and Short,J.M. (1987) Biotechniques, 5, 376-379.
11. Choi,Y., Miguez,C. and Lee,B. (2004) Appl. Env. Microbiol., 70, 3213-3221.
12. Choo,D.-W., Kurihara,T., Suzuki,T., Soda,K. and Esaki,N. (1998) Appl. Env. Microbiol., 64, 486-491.
13. Eddy,S.R. (1998) Bioinformatics, 14, 755-763.
14. Feller,G., Thiry,M., Arpigny,J.L. and Gerday,C. (1991) Gene, 102, 111-115.
15. Gandolfi,R., Marinelli,F., Lazzarini,A. and Molinari,F. (2000) J. Appl. Microbiol., 89, 870-875.
16. Guex,N. and Peitsch,M.C. (1997) Electrophoresis, 18, 2714-2723.
17. Hess,M., Katzer,M. and Antranikian,G. (2008) Extremophiles, 12, 351-364.
18. Ikeda,H., Ishikawa,J., Hanamoto,A., Shinose,M., Kikuchi,H., Shiba,T., Sakaki,Y., Hattori,M. and Omura,S. (2003) Nat. Biotechnol., 21, 526-531.
19. Kieser,T., Bibb,M.J., Buttner,M.J., Chater,K.F. and Hopwood,D.A. (2000) Practical Streptomyces Genetics: A Laboratory Manual. The John Innes Foundation, Norwich.
20. Laemmli,U. (1970) Nature, 227, 680-685.
21. Manco,G., Adinolfi,E., Pisani,F.M., Ottolina,G., Carrea,G. and Rossi,M. (1998) Biochem. J., 332, 203-212.
22. Manco,G., Giosue,E., D'Auria,S., Herman,P., Carrea,G. and Rossi,M. (2000) Arch. Biochem. Biophys., 373, 182-192.
23. Mandrich,L., Pezzullo,M., Vecchio,P., Barone,G., Rossi,M. and Manco,G. (2004) J. Mol. Biol., 335, 357-369.
24. Mandrich,L., Merone,L., Pezzullo,M., Cipolla,L., Nicotra,F., Rossi,M. and Manco,G. (2005) J. Mol. Biol., 345, 501-512.
25. Messing,J. (1983) Methods Enzymol., 101, 20-78.
26. Park,Y.-J., Choi,S. and Lee,H.-B. (2006) Biochim. Biophys. Acta, 1760, 820-828.
27. Peitsch,M.C. (1995) Bio/Technology, 13, 658-660.
28. Raymer,G., Willard,J.A. and Schottel,J.L. (1990) J. Bacteriol., 172, 7020-7026.
29. Rhee,J.-K., Ahn,D.-G., Kim,Y.-G. and Oh,J.-W. (2005) Appl. Environ. Microbiol., 71, 817-825.
30. Sambrook,J., Fritsch,F. and Maniatis,T. (1989) Molecular Cloning: A Laboratory Manual. Cold Spring Harbor, New York.
31. Schwede,T., Kopp,J., Guex,N. and Peitsch,M.C. (2003) Nucleic Acids Res., 31, 3381-3385.
32. Soror,S.H., Verma,V., Rao,R., Rasool,S., Koul,S., Qazi,G.N. and Cullum,J. (2007) J. Ind. Microbiol. Biotechnol., 34, 525-531.
33. Stajich,J., et al. (2002) Genome Res., 12, 1611-1618.
34. Tesch,C., Nikoleit,K., Gnau,V., Götz,F. and Bormann,C. (1996) J. Bacteriol., 178, 1858-1865.
35. Thompson,J.D., Higgins,D.G. and Gibson,T.J. (1994) Nucleic Acids Res., 22, 4673-4680.
36. Torres,S., Baigori,M., Pandey,A. and Castro,G. (2008) Appl. Biochem. Biotechnol., 151, 221-232.
37. Ugwu,S. and Apte,S. (2004) Pharm. Technol., 28, 86-113.
38. Wang,G.-Y., Michailides,T.J. and Hammock,B.D. (2000) Arch. Biochem. Biophys., 382, 31-38.
39. Wallner,B. and Elofsson,A. (2003) Protein Sci., 12, 1073-1086.
40. Wallner,B. and Elofsson,A. (2005) Protein Sci., 15, 900-913.
41. Weiner,M.P., Costa,G.L., Schoettlin,W., Cline,J., Mathur,E. and Bauer,J.C. (1994a) Gene, 151, 119-123.
42. Weiner,M.P., Anderson,C., Jerpseth,B., Wells,S., Johnson-Browne,B. and Vaillancourt,P. (1994b) Strateg. Mol. Biol., 7, 41-43.