The relevance of carbon dioxide metabolism in Streptococcus thermophilus

Microbiology

Volumn 155, Issue 6, 2009, Pages 1953-1965

  Arioli, Stefania ^a   Roncada, Paola ^b   Salzano, Anna Maria ^c   Deriu, Francesca ^d   Corona, Silvia ^e   Guglielmetti, Simone ^a   Bonizzi, Luigi ^d   Scaloni, Andrea ^c   Mora, Diego ^a  

^a Department of Food Science and Microbiology ^*  (Italy)

^b Istituto Sperimentale Italiano Lazzaro Spallanzani   (Italy)

^c CNR   (Italy)

^d UNIVERSITY OF MILAN   (Italy)

^e FONDAZIONE IRCCS POLICLINICO SAN MATTEO   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

ARGININE; ASPARTIC ACID; CARBON DIOXIDE; GLUTAMINE; NITROGEN; PHOSPHOENOLPYRUVATE; URACIL; BETA GALACTOSIDASE; CARBAMOYL PHOSPHATE SYNTHASE (GLUTAMINE HYDROLYSING); LACTATE DEHYDROGENASE; PHOSPHOENOLPYRUVATE CARBOXYLASE; PROTEOME; UREA;

ACIDIFICATION; ARTICLE; AUXOTROPHY; BACTERIAL CELL; BACTERIAL GENETICS; BACTERIAL GROWTH; BACTERIAL METABOLISM; BIOMASS PRODUCTION; CELL STRUCTURE; CONTROLLED STUDY; ENERGY METABOLISM; MICROENVIRONMENT; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEOMICS; STREPTOCOCCUS THERMOPHILUS; ANIMAL; BIOSYNTHESIS; COMPARATIVE STUDY; METABOLISM; MICROBIOLOGY; MILK; TRANSMISSION ELECTRON MICROSCOPY; ULTRASTRUCTURE;

BACTERIA (MICROORGANISMS); STREPTOCOCCUS THERMOPHILUS;

ANIMALS; ARGININE; ASPARTIC ACID; BETA-GALACTOSIDASE; CARBAMOYL-PHOSPHATE SYNTHASE (GLUTAMINE-HYDROLYZING); CARBON DIOXIDE; GLUTAMINE; INDUSTRIAL MICROBIOLOGY; L-LACTATE DEHYDROGENASE; MICROSCOPY, ELECTRON, TRANSMISSION; MILK; NITROGEN; PHOSPHOENOLPYRUVATE; PHOSPHOENOLPYRUVATE CARBOXYLASE; PROTEOME; STREPTOCOCCUS THERMOPHILUS; UREA;

EID: 67650714100     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/mic.0.024737-0     Document Type: Article

References (46)

1. Altermann, E., Russell, W. M., Azcarate-Peril, M. A., Barrangou, R., Buck, B. L., McAuliffe, O., Souther, N., Dobson, A., Duong, T. & other authors (2005). Complete genome of the probiotic lactic acid bacterium Lactobacillus acidophilus NCFM. Proc Natl Acad Sci U S A 102, 3906-3912.
2. Arena, S., D'Ambrosio, C., Renzone, G., Rullo, R., Ledda, L., Vitale, F., Maglione, G., Varcamonti, M., Ferrara, L. & Scaloni, A. (2006). A study of Streptococcus thermophilus proteome by integrated analytical procedures and differential expression investigations. Proteomics 6, 181-192.
3. Arioli, S., Monnet, C., Guglielmetti, S., Parini, C., De Noni, I., Hogenboom, J., Halami, P. M. & Mora, D. (2007). Aspartate biosynthesis is essential for the growth of Streptococcus thermophilus in milk, and aspartate availability modulates the level of urease activity. Appl Environ Microbiol 73, 5789-5796.
4. 2, homologous to the pyrimidine-dependent regulator PyrR. J Bacteriol 188, 8607-8616.
5. Bernhardt, J., Weibezahn, J., Scharf, C. & Hecker, M. (2003). Bacillus subtilis during feast and famine: visualization of the overall regulation of protein synthesis during glucose starvation by proteome analysis. Genome Res 13, 224-237.
6. Biswas, I., Gruss, A., Ehrlich, D. & Maguin, E. (1993). High-efficiency gene inactivation and replacement system for Gram-positive bacteria. J Bacteriol 175, 3628-3635.
7. Bolotin, A., Wincker, P., Mauger, S., Jaillon, O., Malarme, K., Weissanbach, J., Ehrlich, S. D. & Sorokin, A. (2001). The complete genome sequence of lactic acid bacterium Lactococcus lactis ssp. lactis IL1403. Genome Res 11, 731-753.
8. Bolotin, A., Quinquis, B., Renault, P., Sorokin, A., Ehrlich, S. D., Kulakauskas, S., Lapidus, A., Goltsman, E., Mazur, M. & other authors (2004). Complete sequence and comparative genome analysis of the dairy bacterium Streptococcus thermophilus. Nat Biotechnol 22, 1554-1558.
9. Bradford, M. M. (1976). A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72, 248-254.
10. Callanan, M., Kaleta, P., O'Callaghan, J., O'Sullivan, O., Jordan, K., McAuliffe, O., Sangrador-Vegas, A., Slattery, L., Fitzgerald, G. F. & other authors (2008). Genome sequence of Lactobacillus helveticus: an organism distinguished by selective gene loss and insertion sequence element expansion. J Bacteriol 190, 727-735.
11. Chaillou, S., Champomier-Vergès, M. C., Cornet, M., Crutz-Le Coq, A. M., Dudez, A. M., Martin, S., Beaufils, S., Darbon-Rongère, E., Bossy, R. & other authors (2005). The complete genome sequence of the meat-borne lactic acid bacterium Lactobacillus sakei 23K. Nat Biotechnol 23, 1527-1533.
12. Claesson, M. J., Leahy, S., Canchaya, C., van Pijkeren, J. P., Cerdeño-Tárraga, A. M., Parkhill, J., Flynn, S., O'Sullivan, G. C., Collins, J. K. & other authors (2006). Multireplicon genome architecture of Lactobacillus salivarius. Proc Natl Acad Sci U S A 103, 6718-6723.
13. D'Ambrosio, C., Arena, S., Fulcoli, G., Scheinfeld, M. H., Zhou, D., D'Adamio, L. & Scaloni, A. (2006). Hyperphosphorylation of JNK-interacting protein 1, a protein associated with Alzheimer disease. Mol Cell Proteomics 5, 97-113.
14. Eymann, C., Dreisbach, A., Albrecht, D., Bernhardt, J., Becher, D., Gentner, S., Tam le, T., Büttner, K., Buurman, G. & other authors (2004). A comprehensive proteome map of growing Bacillus subtilis cells. Proteomics 4, 2849-2876.
15. + ratio. J Bacteriol 179, 5282-5287.
16. Gaspar, P., Neves, A. R., Shearman, C. A., Gasson, M. J., Baptista, A. M., Turner, D. L., Soares, C. M. & Santos, H. (2007). The lactate dehydrogenases encoded by the ldh and ldhB genes in Lactococcus lactis exibits distinct regulation and catalytic properties - comparative modelling to probe the molecular basis. FEBS J 274, 5924-5936.
17. Giliberti, G., Naclerio, G., Martirani, L., Ricca, E. & De Felice, M. (2002). Alteration of cell morphology and viability in a recA mutant of Streptococcus thermophilus upon induction of heat shock and nutrient starvation. Gene 295, 1-6.
18. Gunnewijk, M. G. W. & Poolman, B. (2000a). Phosphorylation state of HPr determines the level of expression and the extent of phosphorylation of the lactose transport protein of Streptococcus thermophilus. J Biol Chem 275, 34073-34079.
19. Gunnewijk, M. G. W. & Poolman, B. (2000b). HPr(His-P)-mediated phosphorylation differently affects counterflow and proton motive force-driven uptake via the lactose transport protein of Streptococcus thermophilus. J Biol Chem 275, 34080-34085.
20. Hols, P., Hancy, F., Fontaine, L., Grossiord, B., Prozzi, D., Leblond-Bourget, N., Decaris, B., Bolotin, A., Delorme, C. & other authors (2005). New insights in the molecular biology and physiology of Streptococcus thermophilus revealed by comparative genomics. FEMS Microbiol Rev 29, 435-463.
21. Kleerebezem, M., Boekhorst, J., van Kranenburg, R., Molenaar, D., Kuipers, O., Leer, R., Tarchini, R., Peters, S., Sandbrink, H. M. & other authors (2003). Complete genome sequence of Lactobacillus plantarum WCFS1. Proc Natl Acad Sci U S A 100, 1990-1995.
22. Link, A. J., Eng, J. K., Schieltz, D. M., Carmack, E., Mize, G. J., Morris, D. R., Garvik, B. M. & Yates, J. R., III (1999). Direct analysis of protein complexes using mass spectrometry. Nat Biotechnol 17, 676-682.
23. Louaileche, H., Braquart, P., Saulnier, F., Desmazeud, M. & Linden, G. (1993). Carbon dioxide effects on the growth and metabolites of morphological variants of Streptococcus thermophilus. J Dairy Sci 76, 3683-3689.
24. Louaileche, H., Bracquart, P., Guimont, C. & Linden, G. (1996). Carbon dioxide fixation by cells and cell-free extracts of Streptococcus thermophilus. J Dairy Res 63, 321-325.
25. MacCoss, M. J., Wu, C. C. & Yates, J. R., III (2002). Probability based validation of protein identifications using a modified SEQUEST algorithm. Anal Chem 74, 5593-5599.
26. Makarova, K., Slesarev, A., Wolf, Y., Sorokin, A., Mirkin, B., Koonin, E., Pavolv, A., Pavlova, N., Karamychev, V. & other authors (2006). Comparative genomics of the lactic acid bacteria. Proc Natl Acad Sci U S A 103, 15611-15616.
27. Manachini, P. L., Fortina, M. G., Parini, C. & Craveri, R. (1985). Bacillus thermoruber sp. nov., nom. rev., a red pigmented thermophilic bacterium. Int J Syst Bacteriol 35, 493-496.
28. Mastro, R. & Hall, M. (1999). Protein delipidation and precipitation by tri-n-butylphosphate, acetone, and methanol treatment for isoelectric focusing and two-dimensional gel electrophoresis. Anal Biochem 273, 313-315.
29. Mora, D., Maguin, E., Masiero, M., Ricci, G., Parini, C., Manachini, P. L. & Daffonchio, D. (2004). Characterization of urease genes cluster of Streptococcus thermophilus. J Appl Microbiol 96, 209-219.
30. Mora, D., Monnet, C., Parini, C., Guglielmetti, S., Mariani, A., Pintus, P., Molinari, F., Daffonchio, D. & Manachini, P. L. (2005). Urease biogenesis in Streptococcus thermophilus. Res Microbiol 156, 897-903.
31. Morita, H., Toh, H., Fukuda, S., Horikawa, H., Oshima, K., Suzuki, T., Murakami, M., Hisamatsu, S., Kato, Y. & other authors (2008). Comparative genome analysis of Lactobacillus reuteri and Lactobacillus fermentum reveal a genomic island for reuterin and cobolamin production. DNA Res 15, 151-161.
32. Nicoloff, H., Hubert, J.-C. & Bringel, F. (2000). In Lactobacillus plantarum, carbamoyl phosphate is synthesized by two carbamoyl-phosphate synthetases (CPS): carbon dioxide differentiates the arginine-repressed from the pyrimidine-regulated CPS. J Bacteriol 182, 3416-3422.
33. Nicoloff, H., Elagöz, A., Arsène-Ploetze, F., Kammerer, B., Martinussen, J. & Bringel, F. (2005). Repression of the pyr operon in Lactobacillus plantarum prevents its ability to grow at low carbon dioxide levels. J Bacteriol 187, 2093-2104.
34. Palmfeldt, J., Levander, F., Hahn-Hägerdal, B. & Peter, J. (2004). Acidic proteome of growing and resting Lactococcus lactis metabolizing maltose. Proteomics 4, 3881-3898.
35. Peng, J., Elias, J. E., Thoreen, C. C., Licklider, L. J. & Gygi, S. P. (2003). Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for large-scale protein analysis: the yeast proteome. J Proteome Res 2, 43-50.
36. Perkins, D. N., Pappin, D. J., Creasy, D. M. & Cottrell, J. S. (1999). Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 20, 3551-3567.
37. Pridmore, R. D., Berger, B., Desiere, F., Vilanova, D., Barretto, C., Pittet, A. C., Zwahlen, M. C., Rouvet, M., Altermann, E. & other authors (2004). The genome sequence of the probiotic intestinal bacterium Lactobacillus johnsonii NCC 533. 2004. Proc Natl Acad Sci U S A 101, 2512-2517.
38. Reiter, B. & Oram, J. D. (1962). Nutritional studies on cheese starters. I. Vitamin and amino acid requirements of single strain starters. J Dairy Res 29, 63-77.
39. Rocco, M., D'Ambrosio, C., Arena, S., Faurobert, M., Scaloni, A. & Marra, R. (2006). Proteomic analysis of tomato fruits from two ecotypes during ripening. Proteomics 6, 3781-3791.
40. Salzano, A. M., Arena, S., Tenzone, G., D'Ambrosio, C., Rullo, R., Bruschi, M., Ledda, L., Maglione, G., Candiano, G. & other authors (2007). A widespread picture of the Streptococcus thermophilus proteome by cell lysate fractionation and gel-based/gel-free approaches. Proteomics 7, 1420-1433.
41. Sciochetti, S. A., Blakely, G. W. & Piggot, P. J. (2001). Growth phase variation in cell and nucleoid morphology in a Bacillus subtilis recA mutant. J Bacteriol 183, 2963-2968.
42. Talamo, F., D'Ambrosio, C., Arena, S., Del Vecchio, P., Ledda, L., Zehender, G., Ferrara, L. & Scaloni, A. (2003). Proteins from bovine tissues and biological fluids: defining a reference electrophoresis map for liver, kidney, muscle, plasma and red blood cells. Proteomics 3, 440-460.
43. Van de Guchte, M., Penaud, S., Grimaldi, C., Berbe, V., Bryson, K., Nicolas, P., Robert, C., Oztas, S., Mangenot, S. & other authors (2006). The complete genome sequence of Lactobacillus bulgaricus reveals extensive and ongoing reductive evolution. Proc Natl Acad Sci U S A 103, 9274-9279.
44. van den Bogaard, P. T., Kleerebezem, M., Kuipers, O. P. & de Vos, W. M. (2000). Control of lactose transport, β-galactosidase activity, and glycolysis by CcpA in Streptococcus thermophilus: evidence for carbon catabolite repression by a non-phosphoenolpyruvate-dependent phosphotransferase system sugar. J Bacteriol 182, 5982-5989.
45. Wang, H., Weizhu, Y., Coolbear, T., O'Sullivan, D. & McKay, L. L. (1998). A deficiency in aspartate biosynthesis in Lactococcus lactis subsp. lactis C2 causes slow milk coagulation. Appl Environ Microbiol 64, 1673-1679.
46. Wang, H., O'Sullivan, D. J., Baldwin, K. A. & McKay, L. L. (2000). Cloning, sequencing, and expression of the pyruvate carboxylase gene in Lactococcus lactis subsp. lactis C2. Appl Environ Microbiol 66, 1223-1227.