-
1
-
-
33748849648
-
Machine learning in bioinformatics
-
Larrañaga P, Calvo B, Santana R, Bielza C, Galdiano J, Inza I, Lozano JA, Armañanzas R, Santafé G, Pérez A, Robles V. Machine learning in bioinformatics. Briefings in Bioinformatics 2006; 17 (1): 86-112.
-
(2006)
Briefings in Bioinformatics
, vol.17
, Issue.1
, pp. 86-112
-
-
Larrañaga, P.1
Calvo, B.2
Santana, R.3
Bielza, C.4
Galdiano, J.5
Inza, I.6
Lozano, J.A.7
Armañanzas, R.8
Santafé, G.9
Pérez, A.10
Robles, V.11
-
2
-
-
33646854074
-
A generic concept for large-scale microarray analysis dedicated to medical diagnostics
-
Dugas M, Weninger F, Merk S, Kohlmann A, Haferlach T. A generic concept for large-scale microarray analysis dedicated to medical diagnostics. Methods Inf Med 2006; 45 (2): 146-152.
-
(2006)
Methods Inf Med
, vol.45
, Issue.2
, pp. 146-152
-
-
Dugas, M.1
Weninger, F.2
Merk, S.3
Kohlmann, A.4
Haferlach, T.5
-
5
-
-
22944466045
-
Molecular diagnosis classification, model selection and performance evaluation
-
Markowetz F, Spang R. Molecular diagnosis classification, model selection and performance evaluation. Methods Inf Med 2005; 44 (3): 438-443.
-
(2005)
Methods Inf Med
, vol.44
, Issue.3
, pp. 438-443
-
-
Markowetz, F.1
Spang, R.2
-
6
-
-
3042679216
-
Multivariate selection of genetic markers in diagnostic classification
-
Weber G, Vinterbo S, Ohno-Machado L. Multivariate selection of genetic markers in diagnostic classification. Artif Intell Med 2004; 31: 155-167.
-
(2004)
Artif Intell Med
, vol.31
, pp. 155-167
-
-
Weber, G.1
Vinterbo, S.2
Ohno-Machado, L.3
-
7
-
-
16244378865
-
Selection of predictor variables for pneumonia using neural networks and genetic algorithms
-
Heckerling PS, Gerber BS, Tape TG, Wigton R. Selection of predictor variables for pneumonia using neural networks and genetic algorithms. Methods Inf Med 2005; 44 (1): 89-97.
-
(2005)
Methods Inf Med
, vol.44
, Issue.1
, pp. 89-97
-
-
Heckerling, P.S.1
Gerber, B.S.2
Tape, T.G.3
Wigton, R.4
-
12
-
-
0034863834
-
Classification of microarray data with penalized logistic regression
-
Eilers P, Boer J, van Ommen G, van Houwelingen H. Classification of microarray data with penalized logistic regression. In: Proc of SPIE. Progress in Biomedical Optics and Images, 2001. Volume 4266 (2): 187-198.
-
(2001)
Proc of SPIE. Progress in Biomedical Optics and Images
, vol.4266
, Issue.2
, pp. 187-198
-
-
Eilers, P.1
Boer, J.2
Van Ommen, G.3
Van Houwelingen, H.4
-
13
-
-
15944363312
-
Classification of gene microarrays by penalized logistic regression
-
Zhu J, Hastie T. Classification of gene microarrays by penalized logistic regression. Biostatistics 2004; 5: 427-443.
-
(2004)
Biostatistics
, vol.5
, pp. 427-443
-
-
Zhu, J.1
Hastie, T.2
-
14
-
-
22944456563
-
Dimension reduction-based penalized logistic regression for cancer classification using microarray data
-
Shen L, Tan EC. Dimension reduction-based penalized logistic regression for cancer classification using microarray data. IEEE Trans Comput Biol Bioinformatics 2005; 2: 166-175.
-
(2005)
IEEE Trans Comput Biol Bioinformatics
, vol.2
, pp. 166-175
-
-
Shen, L.1
Tan, E.C.2
-
15
-
-
0036161259
-
Gene selection for cancer classification using support vector machines
-
Guyon I, Weston J, Barnhill S, Vapnik V. Gene selection for cancer classification using support vector machines. Mach Learning 2002; 46: 389-422.
-
(2002)
Mach Learning
, vol.46
, pp. 389-422
-
-
Guyon, I.1
Weston, J.2
Barnhill, S.3
Vapnik, V.4
-
16
-
-
0345327592
-
A simple and efficient algorithm for gene selection using sparse logistic regression
-
Shevade SK, Keerthi SS. A simple and efficient algorithm for gene selection using sparse logistic regression. Bioinformatics 2003; 19: 2246-2253.
-
(2003)
Bioinformatics
, vol.19
, pp. 2246-2253
-
-
Shevade, S.K.1
Keerthi, S.S.2
-
17
-
-
33750012146
-
Gene selection in cancer classification using sparse logistic regression with Bayesian regularization
-
Cawley GC, Talbot N. Gene selection in cancer classification using sparse logistic regression with Bayesian regularization. Bioinformatics 2006; 22: 2348-2355.
-
(2006)
Bioinformatics
, vol.22
, pp. 2348-2355
-
-
Cawley, G.C.1
Talbot, N.2
-
20
-
-
56249124589
-
Optimizing logistic regression coefficients for discrimination and calibration using estimation of distribution algorithms
-
Robles V, Bielza C, Larrañaga P, González S, Ohno- Machado L. Optimizing logistic regression coefficients for discrimination and calibration using estimation of distribution algorithms. TOP 2008; 16: 345-366.
-
(2008)
TOP
, vol.16
, pp. 345-366
-
-
Robles, V.1
Bielza, C.2
Larrañaga, P.3
González, S.4
Ohno- MacHado, L.5
-
21
-
-
0000331692
-
Optimization in continuous domains by learning and simulation of Gaussian networks
-
Larrañaga P, Etxeberria R, Lozano JA, Peña JM. Optimization in continuous domains by learning and simulation of Gaussian networks. In: Workshop in Optimization by Building and Using Probabilistic Models. Genetic and Evolutionary Computation Conference, GECCO 2000. pp 201-204.
-
(2000)
Workshop in Optimization by Building and Using Probabilistic Models. Genetic and Evolutionary Computation Conference, GECCO
, pp. 201-204
-
-
Larrañaga, P.1
Etxeberria, R.2
Lozano, J.A.3
Peña, J.M.4
-
22
-
-
0036856581
-
Mathematical modelling of UMDAc algorithm with tournament selection. Behaviour on linear and quadratic functions
-
González C, Lozano JA, Larrañaga P. Mathematical modelling of UMDAc algorithm with tournament selection. Behaviour on linear and quadratic functions. Internat J Approx Reason 2002; 31: 313-340.
-
(2002)
Internat J Approx Reason
, vol.31
, pp. 313-340
-
-
González, C.1
Lozano, J.A.2
Larrañaga, P.3
-
23
-
-
0000987741
-
Gaussian influence diagrams
-
Shachter R, Kenley C. Gaussian influence diagrams. Manag Sci 1989; 35: 527-550.
-
(1989)
Manag Sci
, vol.35
, pp. 527-550
-
-
Shachter, R.1
Kenley, C.2
-
24
-
-
0036489046
-
Comparison of discrimination methods for the classification of tumors using gene expression data
-
Dudoit S, Fridlyand J, Speed TP. Comparison of discrimination methods for the classification of tumors using gene expression data. J Am Stat Assoc 2002; 97: 77-87.
-
(2002)
J Am Stat Assoc
, vol.97
, pp. 77-87
-
-
Dudoit, S.1
Fridlyand, J.2
Speed, T.P.3
-
25
-
-
0035949684
-
Predicting the clinical status of human breast cancer by using gene expression profiles
-
West M, Blanchette C, Dressman H, Huang E, Ishida S, Spang R, Zuzan H, Olson JA, Marks JR, Nevins JR. Predicting the clinical status of human breast cancer by using gene expression profiles. Proc Natl Acad Sci USA 2001; 98 (20): 11462-11467.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, Issue.20
, pp. 11462-11467
-
-
West, M.1
Blanchette, C.2
Dressman, H.3
Huang, E.4
Ishida, S.5
Spang, R.6
Zuzan, H.7
Olson, J.A.8
Marks, J.R.9
Nevins, J.R.10
-
26
-
-
3042532685
-
Filter versus wrapper gene selection approaches in DNA microarray domains
-
Inza I, Larrañaga P, Blanco R, Cerrolaza A. Filter versus wrapper gene selection approaches in DNA microarray domains. Artif Intell Med 2004; 31: 91-103.
-
(2004)
Artif Intell Med
, vol.31
, pp. 91-103
-
-
Inza, I.1
Larrañaga, P.2
Blanco, R.3
Cerrolaza, A.4
-
27
-
-
1342330535
-
Is cross-validation valid for small-sample microarray classification?
-
Braga-Neto UM, Dougherty ER. Is cross-validation valid for small-sample microarray classification? Bioinformatics 2004; 20: 374-380.
-
(2004)
Bioinformatics
, vol.20
, pp. 374-380
-
-
Braga-Neto, U.M.1
Dougherty, E.R.2
-
28
-
-
0033536012
-
Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide microarrays
-
Alon U et al. Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide microarrays. Proc Natl Acad Sci USA 1999; 96: 6745-6750.
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 6745-6750
-
-
Alon, U.1
-
29
-
-
0033569406
-
Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring
-
Golub TR et al. Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring. Science 1996; 286: 531-537.
-
(1996)
Science
, vol.286
, pp. 531-537
-
-
Golub, T.R.1
-
30
-
-
19044391072
-
Gene expression correlates of clinical prostate cancer behavior
-
Singh D, Febbo PG, Ross K, Jackson DG, Manola J, Ladd C, Tamayo P, Renshaw AA, D'Amico AV, Richie JP, Lander ES, Loda M, Kantoff PW, Golub TR, Sellers WR. Gene expression correlates of clinical prostate cancer behavior. Cancer Cell 2002; 1: 203-209.
-
(2002)
Cancer Cell
, vol.1
, pp. 203-209
-
-
Singh, D.1
Febbo, P.G.2
Ross, K.3
Jackson, D.G.4
Manola, J.5
Ladd, C.6
Tamayo, P.7
Renshaw, A.A.8
D'amico, A.V.9
Richie, J.P.10
Lander, E.S.11
Loda, M.12
Kantoff, P.W.13
Golub, T.R.14
Sellers, W.R.15
-
31
-
-
16344365619
-
Classification using partial least squares with penalized logistic regression
-
Fort G, Lambert-Lacroix S. Classification using partial least squares with penalized logistic regression. Bioinformatics 2005; 21: 1104-1111.
-
(2005)
Bioinformatics
, vol.21
, pp. 1104-1111
-
-
Fort, G.1
Lambert-Lacroix, S.2
-
32
-
-
14644435819
-
Members of the heat-shock protein 70 family promote cancer cell growth by distinct mechanisms
-
Rohde M, Daugaard M, Jensen MH, Helin K, Nylandsted J, Marja Jaattela M. Members of the heat-shock protein 70 family promote cancer cell growth by distinct mechanisms. Genes Dev 2005; 19: 570-582.
-
(2005)
Genes Dev
, vol.19
, pp. 570-582
-
-
Rohde, M.1
Daugaard, M.2
Jensen, M.H.3
Helin, K.4
Nylandsted, J.5
Marja Jaattela, M.6
-
33
-
-
9344230370
-
HMGA1 protein overexpression in human breast carcinomas: Correlation with ErbB2 expression
-
Chiappetta G, Botti G, Monaco M, Pasquinelli R, Pentimalli F, Di Bonito M, D'Aiuto G, Fedele M, Iuliano R, Palmieri EA, Pierantoni GM, Giancotti V, Fusco A. HMGA1 protein overexpression in human breast carcinomas: Correlation with ErbB2 expression. Clin Cancer Res 2004; 10: 7637-7644.
-
(2004)
Clin Cancer Res
, vol.10
, pp. 7637-7644
-
-
Chiappetta, G.1
Botti, G.2
Monaco, M.3
Pasquinelli, R.4
Pentimalli, F.5
Di Bonito, M.6
D'aiuto, G.7
Fedele, M.8
Iuliano, R.9
Palmieri, E.A.10
Pierantoni, G.M.11
Giancotti, V.12
Fusco, A.13
-
34
-
-
34250827856
-
Expression of nuclear insulin receptor substrate 1 in breast cancer
-
Sisci D, Morelli C, Garofalo C, Romeo F, Morabito L, Casaburi F, Middea E, Cascio S, Brunelli E, Ando S, Surmacz E. Expression of nuclear insulin receptor substrate 1 in breast cancer. J Clin Pathol 2007; 60: 633-641.
-
(2007)
J Clin Pathol
, vol.60
, pp. 633-641
-
-
Sisci, D.1
Morelli, C.2
Garofalo, C.3
Romeo, F.4
Morabito, L.5
Casaburi, F.6
Middea, E.7
Cascio, S.8
Brunelli, E.9
Ando, S.10
Surmacz, E.11
-
35
-
-
0019987318
-
Urine cyclic nucleotide concentrations in cancer and other conditions; Cyclic GMP: A potential marker for cancer treatment
-
Turner GA, Ellis RD, Guthrie D, Latner AL, Monaghan JM, Ross WM, Skillen AW, Wilson RG. Urine cyclic nucleotide concentrations in cancer and other conditions; cyclic GMP: A potential marker for cancer treatment. J Clin Pathol 2004; 35 (8): 800-806.
-
(2004)
J Clin Pathol
, vol.35
, Issue.8
, pp. 800-806
-
-
Turner, G.A.1
Ellis, R.D.2
Guthrie, D.3
Latner, A.L.4
Monaghan, J.M.5
Ross, W.M.6
Skillen, A.W.7
Wilson, R.G.8
-
36
-
-
4644271448
-
Transcriptomic changes in human breast cancer progression as determined by serial analysis of gene expression
-
Abba MC, Drake JA, Hawkins KA, Hu Y, Sun H, Notcovich C, Gaddis S, Sahin A, Baggerly K, Aldaz CM. Transcriptomic changes in human breast cancer progression as determined by serial analysis of gene expression. Breast Cancer Res 2004; 6: 499-513.
-
(2004)
Breast Cancer Res
, vol.6
, pp. 499-513
-
-
Abba, M.C.1
Drake, J.A.2
Hawkins, K.A.3
Hu, Y.4
Sun, H.5
Notcovich, C.6
Gaddis, S.7
Sahin, A.8
Baggerly, K.9
Aldaz, C.M.10
-
37
-
-
33847007697
-
Sparse logistic regression with Lp penalty for biomarker identification
-
Article 6
-
Liu Z, Jiang F, Tian G, Wang S, Sato F, Meltzer SJ, Tan M. Sparse logistic regression with Lp penalty for biomarker identification. Statistical Applications in Genetics and Molecular Biology 2007; 6: Article 6.
-
(2007)
Statistical Applications in Genetics and Molecular Biology
, vol.6
-
-
Liu, Z.1
Jiang, F.2
Tian, G.3
Wang, S.4
Sato, F.5
Meltzer, S.J.6
Tan, M.7
-
38
-
-
2942602999
-
Entropy-based gene ranking without selection bias for the predictive classification of microarray data
-
Furlanello C, Serafini M, Merler S, Jurman G. Entropy-based gene ranking without selection bias for the predictive classification of microarray data. BMC Bioinform 2003; 4: 54.
-
(2003)
BMC Bioinform
, vol.4
, pp. 54
-
-
Furlanello, C.1
Serafini, M.2
Merler, S.3
Jurman, G.4
-
39
-
-
33846467191
-
Alternative splicing and differential gene expression in colon cancer detected by a whole genome exon array
-
Gardina PJ. Alternative splicing and differential gene expression in colon cancer detected by a whole genome exon array. BMC Genomics 2006; 7: 325.
-
(2006)
BMC Genomics
, vol.7
, pp. 325
-
-
Gardina, P.J.1
-
40
-
-
0037071875
-
Molecular diagnosis of colorectal tumors by expression profiles of 50 genes expressed differentially in adenomas and carcinomas
-
Lin YM, Furukawa Y, Tsunoda T, Yue CT, Yang KC, Nakamura Y. Molecular diagnosis of colorectal tumors by expression profiles of 50 genes expressed differentially in adenomas and carcinomas. Oncogene 2002; 21: 4120-4128.
-
(2002)
Oncogene
, vol.21
, pp. 4120-4128
-
-
Lin, Y.M.1
Furukawa, Y.2
Tsunoda, T.3
Yue, C.T.4
Yang, K.C.5
Nakamura, Y.6
-
41
-
-
28944437658
-
Regularized ROC method for disease classification and biomarker selection with microarray data
-
Ma S, Huang J. Regularized ROC method for disease classification and biomarker selection with microarray data. Bioinformatics 2005; 21: 4356-4362.
-
(2005)
Bioinformatics
, vol.21
, pp. 4356-4362
-
-
Ma, S.1
Huang, J.2
|