-
1
-
-
0028789793
-
Serial Analysis of Gene Expression
-
10.1126/science.270.5235.484 7570003
-
Velculescu VE Zhang L Vogelstein B Kinzler KW Serial Analysis of Gene Expression Science 1995, 270(5235):484-487. 10.1126/science.270.5235.484 7570003
-
(1995)
Science
, vol.270
, Issue.5235
, pp. 484-487
-
-
Velculescu, V.E.1
Zhang, L.2
Vogelstein, B.3
Kinzler, K.W.4
-
2
-
-
0036021408
-
General Statistics of Stochastic Process of Gene Expression in Eukaryotic Cells
-
1462190 12136033
-
Kuznetsov VA Knott GD Bonner RF General Statistics of Stochastic Process of Gene Expression in Eukaryotic Cells Genetics 2002, 161(3):1321-1332. 1462190 12136033
-
(2002)
Genetics
, vol.161
, Issue.3
, pp. 1321-1332
-
-
Kuznetsov, V.A.1
Knott, G.D.2
Bonner, R.F.3
-
3
-
-
0030962307
-
Gene expression profiles in normal and cancer cells
-
10.1126/science.276.5316.1268 9157888
-
Zhang L Zhou W Velculescu VE Kern SE Hruban RH Hamilton SR Vogelstein B Kinzler KW Gene expression profiles in normal and cancer cells Science 1997, 276(5316):1268-72. 10.1126/science.276.5316.1268 9157888
-
(1997)
Science
, vol.276
, Issue.5316
, pp. 1268-1272
-
-
Zhang, L.1
Zhou, W.2
Velculescu, V.E.3
Kern, S.E.4
Hruban, R.H.5
Hamilton, S.R.6
Vogelstein, B.7
Kinzler, K.W.8
-
4
-
-
0348143189
-
Using credibility intervals instead of hypothesis tests in SAGE analysis
-
10.1093/bioinformatics/btg357 14668232
-
Vencio RZN Brentani H Pereira CAB Using credibility intervals instead of hypothesis tests in SAGE analysis Bioinformatics 2003, 19:2461-2464. 10.1093/bioinformatics/btg357 14668232
-
(2003)
Bioinformatics
, vol.19
, pp. 2461-2464
-
-
Vencio, R.Z.N.1
Brentani, H.2
Pereira, C.A.B.3
-
5
-
-
0030823821
-
SAGE transcript profiles for p53-dependent growth regulation
-
10.1038/sj.onc.1201091 9285562
-
Madden SL Galella EA Zhu J Bertelsen AH Beaudry GA SAGE transcript profiles for p53-dependent growth regulation Oncogene 1997, 15(9):1079-85. 10.1038/sj.onc.1201091 9285562
-
(1997)
Oncogene
, vol.15
, Issue.9
, pp. 1079-1085
-
-
Madden, S.L.1
Galella, E.A.2
Zhu, J.3
Bertelsen, A.H.4
Beaudry, G.A.5
-
6
-
-
0030681260
-
The significance of digital gene expression profiles
-
9331369
-
Audic S Claverie JM The significance of digital gene expression profiles Genome Res 1997, 7(10):986-95. 9331369
-
(1997)
Genome Res
, vol.7
, Issue.10
, pp. 986-995
-
-
Audic, S.1
Claverie, J.M.2
-
7
-
-
0037340843
-
Can transcriptome size be estimated from SAGE catalogs?
-
10.1093/bioinformatics/btg018 12611798
-
Stern MD Anisimov SV Boheler KR Can transcriptome size be estimated from SAGE catalogs? Bioinformatics 2003, 19(4):443-8. 10.1093/bioinformatics/ btg018 12611798
-
(2003)
Bioinformatics
, vol.19
, Issue.4
, pp. 443-448
-
-
Stern, M.D.1
Anisimov, S.V.2
Boheler, K.R.3
-
8
-
-
3142555412
-
Clustering analysis of SAGE data using a Poisson approach
-
463327 15239836 10.1186/gb-2004-5-7-r51
-
Cai L Huang H Blackshaw S Liu J Cepko C Wong W Clustering analysis of SAGE data using a Poisson approach Genome Biology 2004, 5(7):R51. http://genomebiology.com/2004/5/7/R51 463327 15239836 10.1186/gb-2004-5-7-r51
-
(2004)
Genome Biology
, vol.5
, Issue.7
-
-
Cai, L.1
Huang, H.2
Blackshaw, S.3
Liu, J.4
Cepko, C.5
Wong, W.6
-
9
-
-
0031442518
-
Characterization of the yeast transcriptome
-
10.1016/S0092-8674(00)81845-0 9008165
-
Velculescu VE Zhang L Zhou W Vogelstein J Basrai MA Bassett JDE Hieter P Vogelstein B Kinzler KW Characterization of the yeast transcriptome Cell 1997, 88:243-251. 10.1016/S0092-8674(00)81845-0 9008165
-
(1997)
Cell
, vol.88
, pp. 243-251
-
-
Velculescu, V.E.1
Zhang, L.2
Zhou, W.3
Vogelstein, J.4
Basrai, M.A.5
Bassett, J.D.E.6
Hieter, P.7
Vogelstein, B.8
Kinzler, K.W.9
-
10
-
-
33745269780
-
Modeling Sage data with a truncated gamma-Poisson model
-
1479844 16549008 10.1186/1471-2105-7-157
-
Thygesen HH Zwinderman AH Modeling Sage data with a truncated gamma-Poisson model BMC Bioinformatics 2006, 7:157. 1479844 16549008 10.1186/1471-2105-7-157
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 157
-
-
Thygesen, H.H.1
Zwinderman, A.H.2
-
11
-
-
0042334741
-
Bayesian shrinkage estimation of the relative abundance of mRNA transcripts using SAGE
-
10.1111/1541-0420.00057 14601748
-
Morris JS Baggerly KA Coombes KR Bayesian shrinkage estimation of the relative abundance of mRNA transcripts using SAGE Biometrics 2003, 59:476-486. 10.1111/1541-0420.00057 14601748
-
(2003)
Biometrics
, vol.59
, pp. 476-486
-
-
Morris, J.S.1
Baggerly, K.A.2
Coombes, K.R.3
-
12
-
-
0043009767
-
Differential expression in SAGE: Accounting for normal between-library variation
-
10.1093/bioinformatics/btg173
-
Baggerly KA Deng L Morris JS Aldaz CM Differential expression in SAGE: accounting for normal between-library variation Bioinform 2003, 19:1477-1483. 10.1093/bioinformatics/btg173
-
(2003)
Bioinform
, vol.19
, pp. 1477-1483
-
-
Baggerly, K.A.1
Deng, L.2
Morris, J.S.3
Aldaz, C.M.4
-
13
-
-
13244287798
-
Bayesian model accounting for within-class biological variability in Serial Analysis of Gene Expression (SAGE)
-
517707 15339345
-
Vencio RZN Brentani H Patrao DFC Pereira CAB Bayesian model accounting for within-class biological variability in Serial Analysis of Gene Expression (SAGE) BMC Bioinformatics 2004, 5:. 517707 15339345
-
(2004)
BMC Bioinformatics
, vol.5
-
-
Vencio, R.Z.N.1
Brentani, H.2
Patrao, D.F.C.3
Pereira, C.A.B.4
-
14
-
-
0034800372
-
Detecting the impact of sequencing errors on SAGE data
-
10.1093/bioinformatics/17.9.840 11590101
-
Colinge J Feger G Detecting the impact of sequencing errors on SAGE data Bioinformatics 2001, 17:840-842. 10.1093/bioinformatics/17.9.840 11590101
-
(2001)
Bioinformatics
, vol.17
, pp. 840-842
-
-
Colinge, J.1
Feger, G.2
-
15
-
-
3042641339
-
Correction of sequence-based artifacts in serial analysis of gene expression
-
10.1093/bioinformatics/bth077 14871862
-
Akmaev VR Wang CJ Correction of sequence-based artifacts in serial analysis of gene expression Bioinformatics 2004, 20:1254-1263. 10.1093/ bioinformatics/bth077 14871862
-
(2004)
Bioinformatics
, vol.20
, pp. 1254-1263
-
-
Akmaev, V.R.1
Wang, C.J.2
-
16
-
-
13244299605
-
Statistical modeling of sequencing errors in SAGE libraries
-
(NIL) 10.1093/bioinformatics/bth924
-
Beissbarth T Hyde L Smyth GK Job C Boon WM Tan SS Scott HS Speed TP Statistical modeling of sequencing errors in SAGE libraries Bioinformatics 2004, 20(Suppl 1(NIL)):I31-I39. 10.1093/bioinformatics/ bth924
-
(2004)
Bioinformatics
, vol.20
, Issue.SUPPL. 1
-
-
Beissbarth, T.1
Hyde, L.2
Smyth, G.K.3
Job, C.4
Boon, W.M.5
Tan, S.S.6
Scott, H.S.7
Speed, T.P.8
-
17
-
-
10944232800
-
Post-transcriptional Expression Regulation in the Yeast Saccharomyces cerevisiae on a Genomic Scale
-
10.1074/mcp.M400099-MCP200 15326222
-
Beyer A Hollunder J Nasheuer HP Wilhelm T Post-transcriptional Expression Regulation in the Yeast Saccharomyces cerevisiae on a Genomic Scale Mol Cell Proteomics 2004, 3(11):1083-1092. http://www.mcponline.org/cgi/content/abstract/3/11/1083 10.1074/mcp.M400099-MCP200 15326222
-
(2004)
Mol Cell Proteomics
, vol.3
, Issue.11
, pp. 1083-1092
-
-
Beyer, A.1
Hollunder, J.2
Nasheuer, H.P.3
Wilhelm, T.4
-
18
-
-
23644460630
-
Tag-based approaches for transcriptome research and genome annotation
-
10.1038/nmeth768 15973418
-
Harbers M Carninci P Tag-based approaches for transcriptome research and genome annotation Nat Methods 2005, 2(7):495-502. 10.1038/nmeth768 15973418
-
(2005)
Nat Methods
, vol.2
, Issue.7
, pp. 495-502
-
-
Harbers, M.1
Carninci, P.2
-
19
-
-
33645785104
-
A high-resolution map of transcription in the yeast genome
-
1414796 16569694 10.1073/pnas.0601091103
-
David L Huber W Granovskaia M Toedling J Palm CJ Bofkin L Jones T Davis RW Steinmetz LM A high-resolution map of transcription in the yeast genome PNAS 2006, 103(14):5320-5325. 1414796 16569694 10.1073/ pnas.0601091103
-
(2006)
PNAS
, vol.103
, Issue.14
, pp. 5320-5325
-
-
David, L.1
Huber, W.2
Granovskaia, M.3
Toedling, J.4
Palm, C.J.5
Bofkin, L.6
Jones, T.7
Davis, R.W.8
Steinmetz, L.M.9
-
21
-
-
0742324218
-
-
ftp://ftp.yeastgenome.org/yeast/ Download date: Feb. 26, 2003
-
Dolinski K Balakrishnan R Christie KR Costanzo MC Dwight SS Engel SR Fisk DG Hirschman JE Hong EL Issel-Tarver L Sethuraman A Theesfeld CL Binkley G Lane C Schroeder M Dong S Weng S Andrada R Botstein D Cherry JM Saccharomyces Genome Database 2003. ftp://ftp.yeastgenome.org/yeast/ Download date: Feb. 26, 2003
-
(2003)
Saccharomyces Genome Database
-
-
Dolinski, K.1
Balakrishnan, R.2
Christie, K.R.3
Costanzo, M.C.4
Dwight, S.S.5
Engel, S.R.6
Fisk, D.G.7
Hirschman, J.E.8
Hong, E.L.9
Issel-Tarver, L.10
Sethuraman, A.11
Theesfeld, C.L.12
Binkley, G.13
Lane, C.14
Schroeder, M.15
Dong, S.16
Weng, S.17
Andrada, R.18
Botstein, D.19
Cherry, J.M.20
more..
-
22
-
-
0004062749
-
-
Wolfram Research Inc Champaign, IL: Wolfram Research Inc., version 5.2 edition
-
Wolfram Research Inc Mathematica Champaign, IL: Wolfram Research Inc., version 5.2 edition 2005.
-
(2005)
Mathematica
-
-
-
23
-
-
84874666156
-
Improved Estimates of the Relative Abundance of mRNA using SAGE, a Gibbs Sampling Approach
-
submitted 17900319
-
Zaretzki R Gilchrist MA Briggs WM Armagan A Improved Estimates of the Relative Abundance of mRNA using SAGE, a Gibbs Sampling Approach Biometrics. submitted 17900319
-
Biometrics
-
-
Zaretzki, R.1
Gilchrist, M.A.2
Briggs, W.M.3
Armagan, A.4
-
24
-
-
1442329652
-
Genome-wide analysis of mRNA lengths in Saccharomyces cerevisiae
-
395734 14709174 10.1186/gb-2003-5-1-r2
-
Hurowitz EH Brown PO Genome-wide analysis of mRNA lengths in Saccharomyces cerevisiae Genome Biol 2003, 5(1):R2. 395734 14709174 10.1186/gb-2003-5-1-r2
-
(2003)
Genome Biol
, vol.5
, Issue.1
-
-
Hurowitz, E.H.1
Brown, P.O.2
|