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Volumn 58, Issue 5, 2009, Pages 596-605

Identification of non-fermenting Gram-negative bacteria of clinical importance by an oligonucleotide array

Author keywords

[No Author keywords available]

Indexed keywords

DIGOXIGENIN; OLIGONUCLEOTIDE; RNA 16S; RNA 23S; SPACER DNA;

EID: 67650459590     PISSN: 00222615     EISSN: None     Source Type: Journal    
DOI: 10.1099/jmm.0.004606-0     Document Type: Article
Times cited : (23)

References (33)
  • 2
    • 66149107002 scopus 로고    scopus 로고
    • Pseudomonas
    • Edited by P. R. Murray, E. J. Baron, J. H. Jorgensen, M. L. Landry & M. A. Pfaller. Washington, DC: American Society for Microbiology
    • Blondel-Hill, E., Henry, E. A. & Speert, D. P. (2007). Pseudomonas. In Manual of Clinical Microbiology, 9th edn, pp. 734-748. Edited by P. R. Murray, E. J. Baron, J. H. Jorgensen, M. L. Landry & M. A. Pfaller. Washington, DC: American Society for Microbiology.
    • (2007) Manual of Clinical Microbiology, 9th Edn , pp. 734-748
    • Blondel-Hill, E.1    Henry, E.A.2    Speert, D.P.3
  • 3
    • 33645947318 scopus 로고    scopus 로고
    • 16S rRNA gene sequencing versus the API 20 NE system and the VITEK 2 ID-GNB card for identification of nonfermenting Gram-negative bacteria in the clinical laboratory
    • Bosshard, P. P., Zbinden, R., Abels, S., Böddinghaus, B., Altwegg, M. & Böttger, E. C. (2006). 16S rRNA gene sequencing versus the API 20 NE system and the VITEK 2 ID-GNB card for identification of nonfermenting Gram-negative bacteria in the clinical laboratory. J Clin Microbiol 44, 1359-1366.
    • (2006) J Clin Microbiol , vol.44 , pp. 1359-1366
    • Bosshard, P.P.1    Zbinden, R.2    Abels, S.3    Böddinghaus, B.4    Altwegg, M.5    Böttger, E.C.6
  • 4
    • 0033826086 scopus 로고    scopus 로고
    • The addition of low numbers of 3′ thymine bases can be used to improve the hybridization signal of oligonucleotides for use within arrays on nylon supports
    • Brown, T. J. & Anthony, R. M. (2000). The addition of low numbers of 3′ thymine bases can be used to improve the hybridization signal of oligonucleotides for use within arrays on nylon supports. J Microbiol Methods 42, 203-207.
    • (2000) J Microbiol Methods , vol.42 , pp. 203-207
    • Brown, T.J.1    Anthony, R.M.2
  • 5
    • 16844367238 scopus 로고    scopus 로고
    • Species-level identification of isolates of the Acinetobacter calcoaceticus-Acinetobacter baumannii complex by sequence analysis of the 16S-23S rRNA gene spacer region
    • DOI 10.1128/JCM.43.4.1632-1639.2005
    • Chang, H. C., Wei, Y. F., Dijkshoorn, L., Vaneechoutte, M., Tang, C. T. & Chang, T. C. (2005). Species-level identification of isolates of the Acinetobacter calcoaceticus-Acinetobacter baumannii complex by sequence analysis of the 16S-23S rRNA gene spacer region. J Clin Microbiol 43, 1632-1639. (Pubitemid 40491200)
    • (2005) Journal of Clinical Microbiology , vol.43 , Issue.4 , pp. 1632-1639
    • Hsein, C.C.1    Yu, F.W.2    Dijkshoorn, L.3    Vaneechoutte, M.4    Chung, T.T.5    Tsung, C.C.6
  • 6
    • 2942564248 scopus 로고    scopus 로고
    • Identification of clinically relevant viridans group streptococci by sequence analysis of the 16S-23S ribosomal DNA spacer region
    • DOI 10.1128/JCM.42.6.2651-2657.2004
    • Chen, C. C., Teng, L. J. & Chang, T. C. (2004). Identification of clinically relevant viridans streptococci by sequence analysis of the 16S-23S rDNA spacer region. J Clin Microbiol 42, 2651-2657. (Pubitemid 38747517)
    • (2004) Journal of Clinical Microbiology , vol.42 , Issue.6 , pp. 2651-2657
    • Chen, C.C.1    Teng, L.J.2    Chang, T.C.3
  • 7
    • 33644764763 scopus 로고    scopus 로고
    • CpG-modified plasmid DNA encoding flagellin improves immunogenicity and provides protection against Burkholderia pseudomallei infection in BALB/c mice
    • DOI 10.1128/IAI.74.3.1699-1705.2006
    • Chen, Y. S., Hsiao, Y. S., Lin, H. H., Liu, Y. & Chen, Y. L. (2006). CpGmodified plasmid DNA encoding flagellin improves immunogenicity and provides protection against Burkholderia pseudomallei infection in BALB/c mice. Infect Immun 74, 1699-1705. (Pubitemid 43346803)
    • (2006) Infection and Immunity , vol.74 , Issue.3 , pp. 1699-1705
    • Chen, Y.-S.1    Hsiao, Y.-S.2    Lin, H.-H.3    Liu, Y.4    Chen, Y.-L.5
  • 8
    • 22144474067 scopus 로고    scopus 로고
    • Use of PCR analyses to define the distribution of Ralstonia species recovered from patients with cystic fibrosis
    • DOI 10.1128/JCM.43.7.3463-3466.2005
    • Coenye, T., Spilker, T., Reik, R., Vandamme, P. & LiPuma, J. J. (2005). Use of PCR analyses to define the distribution of Ralstonia species recovered from patients with cystic fibrosis. J Clin Microbiol 43, 3463-3466. (Pubitemid 40981367)
    • (2005) Journal of Clinical Microbiology , vol.43 , Issue.7 , pp. 3463-3466
    • Coenye, T.1    Spilker, T.2    Reik, R.3    Vandamme, P.4    Lipuma, J.J.5
  • 10
    • 36248932659 scopus 로고    scopus 로고
    • An increasing threat in hospitals: Multidrug-resistant Acinetobacter baumannii
    • DOI 10.1038/nrmicro1789, PII NRMICRO1789
    • Dijkshoorn, L., Nemec, A. & Seifert, H. (2007). An increasing threat in hospitals: multidrug-resistant Acinetobacter baumannii. Nat Rev Microbiol 5, 939-951. (Pubitemid 350131182)
    • (2007) Nature Reviews Microbiology , vol.5 , Issue.12 , pp. 939-951
    • Dijkshoorn, L.1    Nemec, A.2    Seifert, H.3
  • 11
    • 0036791249 scopus 로고    scopus 로고
    • Use of 16S rRNA gene sequencing for identification of nonfermenting Gram-negative bacilli recovered from patients attending a single cystic fibrosis center
    • Ferroni, A., Sermet-Gaudelus, I., Abachin, E., Quesne, G., Lenoir, G., Berche, P. & Gaillard, J. L. (2002). Use of 16S rRNA gene sequencing for identification of nonfermenting Gram-negative bacilli recovered from patients attending a single cystic fibrosis center. J Clin Microbiol 40, 3793-3797.
    • (2002) J Clin Microbiol , vol.40 , pp. 3793-3797
    • Ferroni, A.1    Sermet-Gaudelus, I.2    Abachin, E.3    Quesne, G.4    Lenoir, G.5    Berche, P.6    Gaillard, J.L.7
  • 13
    • 4644327334 scopus 로고    scopus 로고
    • Evaluation of the new VITEK 2 card for identification of clinically relevant gram-negative rods
    • DOI 10.1128/JCM.42.9.4067-4071.2004
    • Funke, G. & Funke-Kissling, P. (2004). Evaluation of the new VITEK 2 card for identification of clinically relevant Gram-negative rods. J Clin Microbiol 42, 4067-4071. (Pubitemid 39296125)
    • (2004) Journal of Clinical Microbiology , vol.42 , Issue.9 , pp. 4067-4071
    • Funke, G.1    Funke-Kissling, P.2
  • 14
    • 0033867757 scopus 로고    scopus 로고
    • Utility of internally transcribed 16S-23S rDNA spacer regions for the definition of Pseudomonas stutzeri genomovars and other Pseudomonas species
    • Guasp, C., Moore, E. R., Lalucat, J. & Bennasar, A. (2000). Utility of internally transcribed 16S-23S rDNA spacer regions for the definition of Pseudomonas stutzeri genomovars and other Pseudomonas species. Int J Syst Evol Microbiol 50, 1629-1639. (Pubitemid 30601975)
    • (2000) International Journal of Systematic and Evolutionary Microbiology , vol.50 , Issue.4 , pp. 1629-1639
    • Guasp, C.1    Moore, E.R.B.2    Lalucat, J.3    Bennasar, A.4
  • 15
    • 0030054296 scopus 로고    scopus 로고
    • New approaches to typing and identification of bacteria using the 16S-23S rDNA spacer region
    • Gürtler, V. & Stanisich, V. A. (1996). New approaches to typing and identification of bacteria using the 16S-23S rDNA spacer region. Microbiology 142, 3-16. (Pubitemid 26032041)
    • (1996) Microbiology , vol.142 , Issue.1 , pp. 3-16
    • Gurtler, V.1    Stanisich, V.A.2
  • 16
    • 9044244529 scopus 로고    scopus 로고
    • Accuracy of four commercial systems for identification of Burkholderia cepacia and other gram-negative nonfermenting bacilli recovered from patients with cystic fibrosis
    • Kiska, D. L., Kerr, A., Jones, M. C., Caracciolo, J. A., Eskridge, B., Jordan, M., Miller, S., Hughes, D., King, N. & Gilligan, P. H. (1996). Accuracy of four commercial systems for identification of Burkholderia cepacia and other Gram-negative nonfermenting bacilli recovered from patients with cystic fibrosis. J ClinMicrobiol 34, 886-891. (Pubitemid 26091501)
    • (1996) Journal of Clinical Microbiology , vol.34 , Issue.4 , pp. 886-891
    • Kjska, D.L.1    Kerr, A.2    Jones, M.C.3    Caracciolo, J.A.4    Eskridge, B.5    Jordan, M.6    Miller, S.7    Hughes, D.8    King, N.9    Gilligan, P.H.10
  • 17
    • 45149114027 scopus 로고    scopus 로고
    • Oligonucleotide array-based identification of species in the Acinetobacter calcoaceticus-A. baumannii complex in isolates from blood cultures and antimicrobial susceptibility testing of the isolates
    • DOI 10.1128/JCM.00014-08
    • Ko, W.-C., Lee, N.-Y., Su, S. C., Dijkshoorn, L., Vaneechoutte, M., Wang, L.-R., Yan, J.-J. & Chang, T. C. (2008). Oligonucleotide-array based identification of species in the Acinetobacter calcoaceticus-A. baumannii complex isolated from blood cultures and antimicrobial susceptibility testing of the isolates. J Clin Microbiol 46, 2052-2059. (Pubitemid 351831841)
    • (2008) Journal of Clinical Microbiology , vol.46 , Issue.6 , pp. 2052-2059
    • Ko, W.-C.1    Lee, N.-Y.2    Siou, C.S.3    Dijkshoorn, L.4    Vaneechoutte, M.5    Wang, L.-R.6    Yan, J.-J.7    Tsung, C.C.8
  • 18
    • 0033151643 scopus 로고    scopus 로고
    • Ribosomal DNA sequencing as a tool for identification of bacterial pathogens
    • DOI 10.1016/S1369-5274(99)80052-6
    • Kolbert, C. P. & Persing, D. H. (1999). Ribosomal DNA sequencing as a tool for identification of bacterial pathogens. Curr Opin Microbiol 2, 299-305. (Pubitemid 29260151)
    • (1999) Current Opinion in Microbiology , vol.2 , Issue.3 , pp. 299-305
    • Kolbert, C.P.1    Persing, D.H.2
  • 19
    • 53649084730 scopus 로고    scopus 로고
    • Burkholderia, Stenotrophomonas, Ralstonia, Cupriavidus, Pandoraea, Brevundimonas, Comamonas, Delftia, and Acidovorax
    • Edited by P. R. Murray, E. J. Baron, J. H. Jorgensen, M. L. Landry & M. A. Pfaller. Washington, DC: American Society for Microbiology
    • LiPuma, J. J., Currie, B. J., Lum, G. D. & Vandamme, P. A. R. (2007). Burkholderia, Stenotrophomonas, Ralstonia, Cupriavidus, Pandoraea, Brevundimonas, Comamonas, Delftia, and Acidovorax. In Manual of Clinical Microbiology, 9th edn, pp. 749-769. Edited by P. R. Murray, E. J. Baron, J. H. Jorgensen, M. L. Landry & M. A. Pfaller. Washington, DC: American Society for Microbiology.
    • (2007) Manual of Clinical Microbiology, 9th Edn , pp. 749-769
    • LiPuma, J.J.1    Currie, B.J.2    Lum, G.D.3    Vandamme, P.A.R.4
  • 20
    • 0033834278 scopus 로고    scopus 로고
    • A simple and sensitive method to extract bacterial, yeast and fungal DNA from blood culture material
    • Millar, B. C., Jiru, X., Moore, J. E. & Earle, J. A. (2000). A simple and sensitive method to extract bacterial, yeast and fungal DNA from blood culture material. J Microbiol Methods 42, 139-147.
    • (2000) J Microbiol Methods , vol.42 , pp. 139-147
    • Millar, B.C.1    Jiru, X.2    Moore, J.E.3    Earle, J.A.4
  • 22
    • 0027938594 scopus 로고
    • Pseudomonas stutzeri infection: A review of hospital isolates and a review of the literature
    • DOI 10.1016/0732-8893(94)90051-5
    • Noble, R. C. & Overman, S. B. (1994). Pseudomonas stutzeri infection: a review of hospital isolates and a review of the literature. Diagn Microbiol Infect Dis 19, 51-56. (Pubitemid 24239977)
    • (1994) Diagnostic Microbiology and Infectious Disease , vol.19 , Issue.1 , pp. 51-56
    • Noble, R.C.1    Overman, S.B.2
  • 23
    • 0000803252 scopus 로고
    • Pseudomonas
    • Edited by N. R. Drieg & J. G. Holt. Baltimore: Williams & Wilkins
    • Palleroni, N. J. (1984). Pseudomonas. In Bergey's Manual of Systematic Bacteriology, vol.1, pp. 141-199. Edited by N. R. Drieg & J. G. Holt. Baltimore: Williams & Wilkins.
    • (1984) Bergey's Manual of Systematic Bacteriology , vol.1 , pp. 141-199
    • Palleroni, N.J.1
  • 24
    • 16844377833 scopus 로고    scopus 로고
    • Detection and genotyping of Mycobacterium species from clinical isolates and specimens by oligonucleotide array
    • DOI 10.1128/JCM.43.4.1782-1788.2005
    • Park, H., Jang, H., Song, E., Chang, C. L., Lee, M., Jeong, S., Park, J., Kang, B. & Kim, C. (2005). Detection and genotyping of Mycobacterium species from clinical isolates and specimens by oligonucleotide array. J Clin Microbiol 43, 1782-1788. (Pubitemid 40491222)
    • (2005) Journal of Clinical Microbiology , vol.43 , Issue.4 , pp. 1782-1788
    • Park, H.1    Jang, H.2    Song, E.3    Chang, C.L.4    Lee, M.5    Jeong, S.6    Park, J.7    Kang, B.8    Kim, C.9
  • 25
    • 0035678867 scopus 로고    scopus 로고
    • 16S rRNA gene sequencing for bacterial pathogen identification in the clinical laboratory
    • DOI 10.1054/modi.2001.29158
    • Patel, J. B. (2001). 16S rRNA gene sequencing for bacterial pathogen identification in the clinical laboratory. Mol Diagn 6, 313-321. (Pubitemid 34042379)
    • (2001) Molecular Diagnosis , vol.6 , Issue.4 , pp. 313-321
    • Patel, J.B.1
  • 26
    • 0000011359 scopus 로고
    • Universal bacterial 16S rDNA amplification and sequencing
    • Edited by D. H. Persing, F. C. Tenover, T. F. Smith & T. J. White. Washington, DC: American Society for Microbiology
    • Relman, D. A. (1993). Universal bacterial 16S rDNA amplification and sequencing. In Diagnostic Molecular Microbiology, pp. 489-495. Edited by D. H. Persing, F. C. Tenover, T. F. Smith & T. J. White. Washington, DC: American Society for Microbiology.
    • (1993) Diagnostic Molecular Microbiology , pp. 489-495
    • Relman, D.A.1
  • 27
    • 37848999573 scopus 로고    scopus 로고
    • Acinetobacter, Achromobacter, Chryseobacterium, Moraxella, and other nonfermentative Gram-negative rods
    • Edited by P. R. Murray, E. J. Baron, J. H. Jorgensen, M. L. Landry & M. A. Pfaller. Washington, DC: American Society for Microbiology
    • Schreckenberger, P. C., Daneshvar, M. I., Weyant, R. S. & Hollis, D. G. (2007). Acinetobacter, Achromobacter, Chryseobacterium, Moraxella, and other nonfermentative Gram-negative rods. In Manual of Clinical Microbiology, 9th edn, pp. 770-802. Edited by P. R. Murray, E. J. Baron, J. H. Jorgensen, M. L. Landry & M. A. Pfaller. Washington, DC: American Society for Microbiology.
    • (2007) Manual of Clinical Microbiology, 9th Edn , pp. 770-802
    • Schreckenberger, P.C.1    Daneshvar, M.I.2    Weyant, R.S.3    Hollis, D.G.4
  • 29
    • 0024402653 scopus 로고
    • Clinical strains of Acinetobacter classified by DNA-DNA hybridization
    • Tjernberg, I. & Ursing, J. (1989). Clinical strains of Acinetobacter classified by DNA-DNA hybridization. APMIS 97, 595-605. (Pubitemid 19188334)
    • (1989) APMIS , vol.97 , Issue.7 , pp. 595-605
    • Tjernberg, I.1    Ursing, J.2
  • 30
    • 33845562609 scopus 로고    scopus 로고
    • Array-based identification of species of the genera Abiotrophia, Enterococcus, Granulicatella, and Streptococcus
    • DOI 10.1128/JCM.01712-06
    • Tung, S. K., Teng, L. J., Vaneechoutte, M., Chen, H. M. & Chang, T. C. (2006). Array-based identification of species of the genera Abiotrophia, Enterococcus, Granulicatella, and Streptococcus. J Clin Microbiol 44, 4414-4424. (Pubitemid 44937073)
    • (2006) Journal of Clinical Microbiology , vol.44 , Issue.12 , pp. 4414-4424
    • Tung, S.K.1    Teng, L.J.2    Vaneechoutte, M.3    Chen, H.M.4    Chang, T.C.5
  • 31
    • 34247282768 scopus 로고    scopus 로고
    • Identification of species of Abiotrophia, Enterococcus, Granulicatella and Streptococcus by sequence analysis of the ribosomal 16S-23S intergenic spacer region
    • DOI 10.1099/jmm.0.47027-0
    • Tung, S. K., Teng, L. J., Vaneechoutte, M., Chen, H. M. & Chang, T. C. (2007). Identification of species of Abiotrophia, Enterococcus, Granulicatella and Streptococcus by sequence analysis of the ribosomal 16S-23S intergenic spacer region. J Med Microbiol 56, 504-513. (Pubitemid 46626569)
    • (2007) Journal of Medical Microbiology , vol.56 , Issue.4 , pp. 504-513
    • Sheng, K.T.1    Lee, J.T.2    Vaneechoutte, M.3    Hung, M.C.4    Tsung, C.C.5
  • 32
    • 45149097348 scopus 로고    scopus 로고
    • Taxonomy of the genus Acinetobacter based on 16S ribosomal RNA gene sequences
    • Edited by U. Gerischer. Norfolk, UK: Caister Academic Press
    • Vaneechoutte, M. & De Baere, T. (2007). Taxonomy of the genus Acinetobacter based on 16S ribosomal RNA gene sequences. In Acinetobacter Molecular Biology, pp. 35-60. Edited by U. Gerischer. Norfolk, UK: Caister Academic Press.
    • (2007) Acinetobacter Molecular Biology , pp. 35-60
    • Vaneechoutte, M.1    De Baere, T.2
  • 33
    • 0031894956 scopus 로고    scopus 로고
    • Comparison of PCR-based DNA fingerprinting techniques for the identification of Listeria species and their use for atypical Listeria isolates
    • Vaneechoutte, M., Boerlin, P., Tichy, H.-V., Bannerman, E., Jäger, B. & Bille, J. (1998). Comparison of PCR-based DNA fingerprinting techniques for the identification of Listeria species and their use for atypical Listeria isolates. Int J Syst Bacteriol 48, 127-139. (Pubitemid 28144646)
    • (1998) International Journal of Systematic Bacteriology , vol.48 , Issue.1 , pp. 127-139
    • Vaneechoutte, M.1    Boerlin, P.2    Tichy, H.-V.3    Bannerman, E.4    Jager, B.5    Bille, J.6


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