메뉴 건너뛰기




Volumn 367, Issue 1898, 2009, Pages 2691-2703

HIV decision support: From molecule to man

Author keywords

Decision support; Drug resistance; Human immunodeficiency virus; Multilevel modelling; Systems biology

Indexed keywords

BIOLOGY;

EID: 67650421988     PISSN: 1364503X     EISSN: None     Source Type: Journal    
DOI: 10.1098/rsta.2009.0043     Document Type: Article
Times cited : (36)

References (26)
  • 1
    • 51849084394 scopus 로고    scopus 로고
    • Virtual laboratory for development and execution of biomedical collaborative applications
    • Jyväskylä, Finland, 17-19 June, Washington, DC: IEEE Computer Society
    • Bubak, M. et al. 2008 Virtual laboratory for development and execution of biomedical collaborative applications. In Proc. 21st IEEE Int. Symp. on Computer-Based Medical Systems (CBMS 2008), Jyväskylä, Finland, 17-19 June 2008, pp. 373-378. Washington, DC: IEEE Computer Society.
    • (2008) Proc. 21st IEEE Int. Symp. on Computer-Based Medical Systems (CBMS 2008) , pp. 373-378
    • Bubak, M.1
  • 2
    • 33847221488 scopus 로고    scopus 로고
    • The application hosting environment: Lightweight middleware for grid-based computational science
    • DOI 10.1016/j.cpc.2006.11.011, PII S0010465506004206
    • Coveney, P. V., Saksena, R. S., Zasada, S. J., McKeown, M. & Pickles, S. 2007 The application hosting environment: lightweight middleware for grid-based computational science. Comput. Phys. Commun. 176, 406-418. (doi:10.1016/j.cpc.2006.11.011) (Pubitemid 46298984)
    • (2007) Computer Physics Communications , vol.176 , Issue.6 , pp. 406-418
    • Coveney, P.V.1    Saksena, R.S.2    Zasada, S.J.3    McKeown, M.4    Pickles, S.5
  • 4
    • 37549044257 scopus 로고    scopus 로고
    • Estimation of an in vivo fitness landscape experienced by HIV-1 under drug selective pressure useful for prediction of drug resistance evolution during treatment
    • (doi:10.1093/bioinformatics/btm540)
    • Deforche, K. et al. 2008 Estimation of an in vivo fitness landscape experienced by HIV-1 under drug selective pressure useful for prediction of drug resistance evolution during treatment. Bioinformatics (Oxf., Engl.) 24, 34-41. (doi:10.1093/bioinformatics/btm540)
    • (2008) Bioinformatics (Oxf., Engl.) , vol.24 , pp. 34-41
    • Deforche, K.1
  • 6
    • 85020773770 scopus 로고    scopus 로고
    • Department of Health and Human Services, Retrieved 8 April 2008, from Guidelines for the use of antiretroviral agents in HIV-1-infected adults and adolescents
    • Department of Health and Human Services 2008 AIDSinfo. Retrieved 8 April 2008, from Guidelines for the use of antiretroviral agents in HIV-1-infected adults and adolescents. See &z.ast;http://www.aidsinfo.nih.gov/ContentFiles/ AdultandAdolescentGL.pdf.
    • (2008) AIDSinfo
  • 7
    • 0030870159 scopus 로고    scopus 로고
    • Kinetic properties of saquinavir-resistant mutants of human immunodeficiency virus type 1 protease and their implications in drug resistance in vivo
    • DOI 10.1021/bi971072e
    • Ermolieff, J., Lin, X. & Tang, J. 1997 Kinetic properties of saquinavir-resistant mutants of human immunodeficiency virus type 1 protease and their implications in drug resistance in vivo. Biochemistry 36, 12 364-12 370. (doi:10.1021/bi971072e) (Pubitemid 27440977)
    • (1997) Biochemistry , vol.36 , Issue.40 , pp. 12364-12370
    • Ermolieff, J.1    Lin, X.2    Tang, J.3
  • 8
    • 85020765400 scopus 로고    scopus 로고
    • A complex automata model of HIV-1 co-receptor tropism
    • (eds C. Boucher & J. Schapiro). Reviews in antiretroviral therapy, Utrecht, The Netherlands: Virology Education, Washington, DC
    • Ertaylan, G. & Sloot, P. 2008 A complex automata model of HIV-1 co-receptor tropism. In Proc. 3rd Int. Workshop in Targeting HIV Entry, Washington, DC, vol.2 (eds C. Boucher & J. Schapiro). Reviews in antiretroviral therapy, p. 25. Utrecht, The Netherlands: Virology Education.
    • (2008) Proc. 3rd Int. Workshop in Targeting HIV Entry , vol.2 , pp. 25
    • Ertaylan, G.1    Sloot, P.2
  • 11
    • 84857692236 scopus 로고    scopus 로고
    • World population highlights: Key findings from PRB's 2007 world population data sheet
    • Washington, DC: Population Reference Bureau
    • Haub, C. 2007 World population highlights: key findings from PRB's 2007 world population data sheet. Population bulletin. Washington, DC: Population Reference Bureau.
    • (2007) Population bulletin
    • Haub, C.1
  • 12
    • 0141571239 scopus 로고    scopus 로고
    • Covariation of amino acid positions in HIV-1 protease
    • DOI 10.1016/S0042-6822(03)00484-7
    • Hoffman, N. G., Schiffer, C. A. & Swanstrom, R. 2003 Covariation of amino acid positions in HIV-1 protease. Virology 314, 536-548. (doi:10.1016/S0042-6822(03)00484-7) (Pubitemid 37206360)
    • (2003) Virology , vol.314 , Issue.2 , pp. 536-548
    • Hoffman, N.G.1    Schiffer, C.A.2    Swanstrom, R.3
  • 13
    • 12344288031 scopus 로고    scopus 로고
    • A new cell-based assay for measuring the forward mutation rate of HIV-1
    • DOI 10.1016/j.jviromet.2004.11.010, PII S0166093404003453
    • Huang, K. & Wooley, D. 2005 A new cell-based assay for measuring the forward mutation rate of HIV-1. J. Virol. Methods 124, 95-104. (doi:10.1016/j.jviromet.2004.11.010) (Pubitemid 40138784)
    • (2005) Journal of Virological Methods , vol.124 , Issue.1-2 , pp. 95-104
    • Huang, K.J.1    Wooley, D.P.2
  • 14
    • 0034209877 scopus 로고    scopus 로고
    • Physician experience in the care of HIV-infected persons is associated with earlier adoption of new antiretroviral therapy
    • Kitahata, M., Van Rompaey, S. & Shields, A. 2000 Physician experience in the care of HIVinfected persons is associated with earlier adoption of new antiretroviral therapy. J. Acquir. Immune Defic. Syndr. 24, 106-114. (Pubitemid 30640955)
    • (2000) Journal of Acquired Immune Deficiency Syndromes , vol.24 , Issue.2 , pp. 106-114
    • Kitahata, M.M.1    Van Rompaey, S.E.2    Shields, A.W.3
  • 15
    • 0029075130 scopus 로고
    • Lower in vivo mutation rate of human immunodeficiency virus type 1 than that predicted from the fidelity of purified reverse transcriptase
    • Mansky, L. & Temin, H. 1995 Lower in vivo mutation rate of human immunodeficiency virus type 1 than that predicted from the fidelity of purified reverse transcriptase. J. Virol. 69, 5087-5094.
    • (1995) J. Virol. , vol.69 , pp. 5087-5094
    • Mansky, L.1    Temin, H.2
  • 16
    • 0030468331 scopus 로고    scopus 로고
    • Human immunodeficiency virus: Mutations in the viral protease that confer resistance to saquinavir increase the dissociation rate constant of the protease-saquinavir complex
    • DOI 10.1074/jbc.271.52.33231
    • Maschera, B., Darby, G., Palú, G., Wright, L., Tisdale, M., Myers, R., Blair, E. D. & Furfine, E. S. 1996 Human immunodeficiency virus. Mutations in the viral protease that confer resistance to saquinavir increase the dissociation rate constant of the protease-saquinavir complex. J. Biol. Chem. 271, 33 231-33 235. (doi:10.1074/jbc.271.52.33231) (Pubitemid 27010130)
    • (1996) Journal of Biological Chemistry , vol.271 , Issue.52 , pp. 33231-33235
    • Maschera, B.1    Darby, G.2    Palu, G.3    Wright, L.L.4    Tisdale, M.5    Myers, R.6    Blair, E.D.7    Furfine, E.S.8
  • 17
    • 33845338724 scopus 로고    scopus 로고
    • Projections of global mortality and burden of disease from 2002 to 2030
    • (doi:10.1371/journal.pmed.0030442)
    • Mathers, C. & Loncar, D. 2006 Projections of global mortality and burden of disease from 2002 to 2030. PLoS Med. 3, e442. (doi:10.1371/journal. pmed.0030442)
    • (2006) PLoS Med. , vol.3
    • Mathers, C.1    Loncar, D.2
  • 18
    • 37349127373 scopus 로고    scopus 로고
    • Insights into a mutation-assisted lateral drug escape mechanism from the HIV-1 protease active site
    • DOI 10.1021/bi700864p
    • Sadiq, S., Wan, S. & Coveney, P. V. 2007 Insights into a mutation-assisted lateral drug escape mechanism from the HIV-1 protease active site. Biochemistry 46, 14 865-14 877. (doi:10.1021/ bi700864p) (Pubitemid 350308878)
    • (2007) Biochemistry , vol.46 , Issue.51 , pp. 14865-14877
    • Sadiq, S.K.1    Wan, S.2    Coveney, P.V.3
  • 19
    • 54249117290 scopus 로고    scopus 로고
    • Automated molecular simulation based binding affinity calculator for ligand-bound HIV-1 proteases
    • (doi:10.1021/ci8000937)
    • Sadiq, S., Wright, D., Watson, S., Zesada, S., Stoica, S. & Coveney, P. V. 2008 Automated molecular simulation based binding affinity calculator for ligand-bound HIV-1 proteases. J. Chem. Inf. Model. 48, 1909-1919. (doi:10.1021/ci8000937)
    • (2008) J. Chem. Inf. Model , vol.48 , pp. 1909-1919
    • Sadiq, S.1    Wright, D.2    Watson, S.3    Zesada, S.4    Stoica, S.5    Coveney, P.V.6
  • 21
    • 84867514107 scopus 로고    scopus 로고
    • Cellular automata model of drug therapy for HIV infection
    • (eds S. Bandini & B. T. Chopard), Lecture Notes in Computer Science, Geneva, Switzerland
    • Sloot, P. M. A., Chen, F. & Boucher, C. 2002 Cellular automata model of drug therapy for HIV infection. In 5th Int. Conf. on Cellular Automata for Research and Industry, Geneva, Switzerland, vol.2493 (eds S. Bandini & B. T. Chopard), pp. 282-293. Lecture Notes in Computer Science.
    • (2002) 5th Int. Conf. on Cellular Automata for Research and Industry , vol.2493 , pp. 282-293
    • Sloot, P.M.A.1    Chen, F.2    Boucher, C.3
  • 23
    • 47249141962 scopus 로고    scopus 로고
    • Stochastic simulation of HIV population dynamics through complex network modeling
    • (doi:10.1080/00207160701750583)
    • Sloot, P. M. A., Ivanov, S., Boukhanovsky, A., van de Vijver, D. & Boucher, C. 2008a Stochastic simulation of HIV population dynamics through complex network modeling. Int. J. Comput. Math. 85, 1175-1187. (doi:10.1080/00207160701750583)
    • (2008) Int. J. Comput. Math. , vol.85 , pp. 1175-1187
    • Sloot, P.M.A.1    Ivanov, S.2    Boukhanovsky, A.3    Van De Vijver, D.4    Boucher, C.5
  • 25
    • 39749152456 scopus 로고    scopus 로고
    • Rapid and accurate prediction of binding free energies for saquinavir-bound HIV-1 proteases
    • DOI 10.1021/ja0779250
    • Stoica, I., Sadiq, S. K. & Coveney, P. V. 2008 Rapid and accurate prediction of binding free energies for saquinavir-bound HIV-1 proteases. J. Am. Chem. Soc. 130, 2639-2648. (doi:10. 1021/ja0779250) (Pubitemid 351304779)
    • (2008) Journal of the American Chemical Society , vol.130 , Issue.8 , pp. 2639-2648
    • Stoica, I.1    Sadiq, S.K.2    Coveney, P.V.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.