Putative endogenous xylanase from brackish-water clam Corbicula japonica

Comparative Biochemistry and Physiology - B Biochemistry and Molecular Biology

Volumn 154, Issue 1, 2009, Pages 85-92

  Sakamoto, Kentaro ^a   Toyohara, Haruhiko ^a  

^a KYOTO UNIVERSITY   (Japan)

Author keywords

Bivalve; Corbicula japonica; Suspension feeder; Xylan; Xylanase

Indexed keywords

AMINO ACID DERIVATIVE; CARBOHYDRATE BINDING PROTEIN; CELLULASE; CELLULOSE; COMPLEMENTARY DNA; GLYCOSIDASE; POLYSACCHARIDE; XYLAN; XYLAN ENDO 1,3 BETA XYLOSIDASE;

AMINO TERMINAL SEQUENCE; ARTICLE; CARBOXY TERMINAL SEQUENCE; CORBICULA; ENZYME ACTIVITY; MOLECULAR CLONING; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PHYLOGENY; PRIORITY JOURNAL; PROTEIN DOMAIN; SECRETORY CELL;

ANIMALIA; BIVALVIA; CORBICULA JAPONICA;

EID: 67649886964     PISSN: 10964959     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.cbpb.2009.05.007     Document Type: Article

References (34)

1. Asahida T., Kobayashi T., Saitoh K., and Nakayama I. Tissue preservation and total DNA extraction from fish stored at ambient temperature using buffers containing high concentration of urea. Fish. Sci. 62 (1996) 727-730
2. Beg Q., Kapoor M., Mahajan L., and Hoondal G. Microbial xylanases and their industrial applications: a review. Appl. Microbiol. Biotechnol. 56 (2001) 326-338
3. Brennan Y., Callen W., Christoffersen L., Dupree P., Goubet F., Healey S., Hernandez M., Keller M., Li K., Palackal N., Sittenfeld A., Tamayo G., Wells S., Hazlewood G., Mathur E., Short J., Robertson D., and Steer B. Unusual microbial xylanases from insect guts. Appl. Environ. Microbiol. 70 (2004) 3609-3617
4. Collins T., Gerday C., and Feller G. Xylanases, xylanase families and extremophilic xylanases. FEMS Microbiol. Rev. 29 (2005) 3-23
5. Davison A., and Blaxter M. Ancient origin of glycosyl hydrolase family 9 cellulase genes. Mol. Biol. Evol. 22 (2005) 1273-1284
6. Derewenda U., Swenson L., Green R., Wei Y., Morosoli R., Shareck F., Kluepfel D., and Derewenda Z. Crystal-structure, at 2.6-angstrom resolution, of the streptomyces-lividans xylanase-a, a member of the f-family of beta-1,4-d-glycanases. J. Biol. Chem. 269 (1994) 20811-20814
7. Gosling E. Bivalve Molluscs; Biology, Ecology and Culture (2003), Blackwell Publishing
8. Guo R., Ding M., Zhang S.L., Xu G.J., and Zhao F.K. Molecular cloning and characterization of two novel cellulase genes from the mollusc Ampullaria crossean. J. Comp. Phys. B 178 (2008) 209-215
9. Hampton E., Knuth M., Li J., Harris J., Lesley S., and Spraggon G. The self-inhibited structure of full-length PCSK9 at 1.9 angstrom reveals structural homology with resistin within the C-terminal domain. Proc. Nat. Acad. Sci. U. S. A. 104 (2007) 14604-14609
10. Imjongjirak C., Amparyup P., and Sittipraneed S. Cloning, genomic organization and expression of two glycosyl hydrolase family 10 (GHF10) genes from golden apple snail (Pomacea canaliculata). DNA Seq. 19 (2008) 224-236
11. Johnson P., Joshi M., Tomme P., Kilburn D., and McIntosh L. Structure of the N-terminal cellulose-binding domain of Cellulomonas fimi CenC determined by nuclear magnetic resonance spectroscopy. Biochem. 35 (1996) 14381-14394
12. Kasai A., and Nakata A. Utilization of terrestrial organic matter by the bivalve Corbicula japonica estimated from stable isotope analysis. Fish. Sci. 71 (2005) 151-158
13. Kasai A., Horie H., and Sakamoto W. Selection of food sources by Ruditapes philippinarum and Mactra veneriformis (Bivalva: Mollusca) determined from stable isotope analysis. Fish. Sci. 70 (2004) 11-20
14. Kornfeld R., and Kornfeld S. Assembly of asparagine-linked oligosaccharides. Annu. Rev. Biochem. 54 (1985) 631-664
15. Kulkarni N., Shendye A., and Rao M. Molecular and biotechnological aspects of xylanases. FEMS Microbiol. Rev. 23 (1999) 411-456
16. Lo N., Watanabe H., and Sugimura M. Evidence for the presence of a cellulase gene in the last common ancestor of bilaterian animals. Proc. R. Soc. London Ser. B 270 (2003) S69-S72
17. Lopez D. PCSK9: an enigmatic protease. Biochem. Biophys. Acta 1781 (2008) 184-191
18. McNeil M., Darvil A.G., Fry S.C., and Albersheim P. Structure and function of the primary cell walls of plants. Annu. Rev. Biochem. 53 (1984) 625-663
19. Mitreva-Dautova M., Roze E., Overmars H., de Graaff L., Schots A., Helder J., Goverse A., Bakker J., and Smant G. A symbiont-independent endo-1,4-beta-xylanase from the plant-parasitic nematode Meloidogyne incognita. Mol. Plant-Microbe Interact. 19 (2006) 521-529
20. Nielsen H., Engelbrecht J., Brunak S., and von Heijne G. Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites. Protein Eng. 10 (1997) 1-6
21. Piper D., Jackson S., Liu Q., Romanow W., Shetterly S., Thibault S., Shan B., and Walker N. The crystal structure of PCSK9: a regulator of plasma LDL-cholesterol. Structure 15 (2007) 545-552
22. Saitou N., and Nei M. The neighbor-joining method - a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4 (1987) 406-425
23. Sakamoto K., and Toyohara H. Molecular cloning of glycoside hydrolase family 45 cellulase genes from brackish water clam Corbicula japonica. Comp. Biochem. Physiol. B 152 (2009) 390-396
24. Sakamoto K., Touhata K., Yamashita M., Kasai A., and Toyohara H. Cellulose digestion by common Japanese freshwater clam Corbicula japonica. Fish. Sci. 73 (2007) 675-683
25. Sakamoto K., Uji S., Kurokawa T., and Toyohara H. Immunohistochemical, in situ hybridization and biochemical studies on endogenous cellulase of Corbicula japonica. Comp. Biochem. Physiol. B. 150 (2008) 216-221
26. Sanchez J., Lescar J., Chazalet V., Audfray A., Gagnon J., Alvarez R., Breton C., Imberty A., and Mitchell E. Biochemical and structural analysis of Helix pomatia agglutinin- a hexameric lectin with a novel fold. J. Biol. Chem. 281 (2006) 20171-20180
27. Subramaniyan S., and Prema P. Biotechnology of microbial xylanases: enzymology, molecular biology, and application. Crit. Rev. Biotech. 22 (2002) 33-64
28. Tamura K., Dudley J., Nei M., and Kumar S. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24 (2007) 1596-1599
29. Teather R., and Wood P. Use of congo red polysaccharide interactions in enumeration and characterization of cellulolytic bacteria from the bovine rumen. Appl. Environ. Microbiol. 43 (1982) 777-780
30. Thompson J., Higgins D., and Gibson T. Clustal-W - improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22 (1994) 4673-4680
31. Wang J., Ding M., Li Y.H., Chen Q.X., Xu G.J., and Zhao F.K. Isolation of a multi-functional endogenous cellulase gene from mollusc, Ampullaria crossean. Acta Biochim. Biophys. Sin. 35 (2003) 941-946
32. Watanabe H., and Tokuda G. Animal cellulases. Cell. Mol. Life Sci. 58 (2001) 1167-1178
33. Watanabe H., Noda H., Tokuda G., and Lo N. A cellulase gene of termite origin. Nature 394 (1998) 330-331
34. Wubah D., Akin D., and Borneman W. Biology, fiber-degradation, and enzymology of anaerobic zoosporic fungi. Crit. Rev. Microbiol. 19 (1993) 99-115