Molecular cloning of glycoside hydrolase family 45 cellulase genes from brackish water clam Corbicula japonica

Comparative Biochemistry and Physiology - B Biochemistry and Molecular Biology

Volumn 152, Issue 4, 2009, Pages 390-396

  Sakamoto, Kentaro ^a   Toyohara, Haruhiko ^a  

^a KYOTO UNIVERSITY   (Japan)

Author keywords

Bivalve; Cellulase; Cellulose; Corbicula japonica; Suspension feeder

Indexed keywords

CELLULASE; CELLULOSE; GLYCOSIDASE;

3' UNTRANSLATED REGION; 5' UNTRANSLATED REGION; AMINO ACID SEQUENCE; ARTICLE; CATALYSIS; CLAM; CORBICULA JAPONICA; ESCHERICHIA COLI; EXOCRINE GLAND; GENE STRUCTURE; IN SITU HYBRIDIZATION; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PHYLOGENY; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; ZYMOGRAPHY;

BIVALVIA; CORBICULA JAPONICA; FUNGI; MOLLUSCA;

EID: 60649087111     PISSN: 10964959     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.cbpb.2009.01.010     Document Type: Article

References (23)

1. Asahida T., Kobayashi T., Saitoh K., and Nakayama I. Tissue preservation and total DNA extraction from fish stored at ambient temperature using buffers containing high concentration of urea. Fish. Sci. 62 (1996) 727-730
2. Beguin P. Detection of cellulase activity in polyacrylamide gels using congo red-stained agar replicas. Anal. Biochem. 131 (1983) 333-336
3. Davison A., and Blaxter M. Ancient origin of glycosyl hydrolase family 9 cellulase genes. Mol. Biol. Evol. 22 (2005) 1273-1284
4. Gosling E. Bivalve Molluscs; Biology, Ecology and Culture (2003), Blackwell Publishing
5. Guo R., Ding M., Zhang S.L., Xu G.J., and Zhao F.K. Molecular cloning and characterization of two novel cellulase genes from the mollusc Ampullaria crossean. J. Comp. Physiol. B 178 (2008) 209-215
6. Henrissat B. A classification of glycosyl hydrolases based on amino-acid-sequence similarities. Biochem. J. 280 (1991) 309-316
7. Henrissat B., Claeyssens M., Tomme P., Lemesle L., and Mornon J.P. Cellulase families revealed by hydrophobic cluster-analysis. Gene 81 (1989) 83-95
8. Imjongjirak C., Amparyup P., and Sittipraneed S. Cloning, genomic organization and expression of two glycosyl hydrolase family 10 (GHF10) genes from golden apple snail (Pomacea canaliculata). DNA Seq. 19 (2008) 224-236
9. Kikuchi T., Jones J., Aikawa T., Kosaka H., and Ogura N. A family of glycosyl hydrolase family 45 cellulases from the pine wood nematode Bursaphelenchus xylophilus. FEBS Lett. 572 (2004) 201-205
10. Kornfeld R., and Kornfeld S. Assembly of asparagine-linked oligosaccharides. Annu. Rev. Biochem. 54 (1985) 631-664
11. Lee S., Kim S., Yoon H., Kim I., Lee K., Je Y., Lee S., Seo S., Sohn H., and Jin B. cDNA cloning, expression, and enzymatic activity of a cellulase from the mulberry longicorn beetle, Apriona germari. Comp. Biochem. Physiol. B 139 (2004) 107-116
12. Ni J., Takehara M., and Watanabe H. Heterologous overexpression of a mutant termite cellulase gene in Escherichia coli by DNA shuffling of four orthologous parental cDNAs. Biosci. Biotechnol. Biochem. 69 (2005) 1711-1720
13. Nielsen H., Engelbrecht J., Brunak S., and von Heijne G. Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites. Protein Eng. 10 (1997) 1-6
14. Sakamoto K., Touhata K., Yamashita M., Kasai A., and Toyohara H. Cellulose digestion by common Japanese freshwater clam Corbicula japonica. Fish. Sci. 73 (2007) 675-683
15. Sakamoto K., Uji S., Kurokawa T., and Toyohara H. Immunohistochemical, in situ hybridization and biochemical studies on endogenous cellulase of Corbicula japonica. Comp. Biochem. Physiol. B 150 (2008) 216-221
16. Suzuki K., Ojima T., and Nishita K. Purification and cDNA cloning of a cellulase from abalone Haliotis discus hannai. Eur. J. Biochem. 270 (2003) 771-778
17. Tamura K., Dudley J., Nei M., and Kumar S. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24 (2007) 1596-1599
18. Thompson J., Higgins D., and Gibson T. Clustal-W - improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22 (1994) 4673-4680
19. Wang J., Ding M., Li Y.H., Chen Q.X., Xu G.J., and Zhao F.K. Isolation of a multi-functional endogenous cellulase gene from mollusc, Ampullaria crossean. Acta biochim. biophys. Sin. 35 (2003) 941-946
20. Watanabe H., and Tokuda G. Animal cellulases. Cell. Mol. Life Sci. 58 (2001) 1167-1178
21. Watanabe H., Noda H., Tokuda G., and Lo N. A cellulase gene of termite origin. Nature 394 (1998) 330-331
22. Wei Y., Lee S., Lee K., Gui Z., Yoon H., Kim I., Je Y., Guo X., Sohn H., and Jin B. N-glycosylation is necessary for enzymatic activity of a beetle (Apriona germari) cellulase. Biochem. Biophys. Res. Commun. 329 (2005) 331-336
23. Xu B., Janson J., and Sellos D. Cloning and sequencing of a molluscan endo-beta-1,4-glucanase gene from the blue mussel, Mytilus edulis. Eur. J. Biochem. 268 (2001) 3718-3727