Gordonia shandongensis sp. nov., isolated from soil in China

International Journal of Systematic and Evolutionary Microbiology

Volumn 57, Issue 3, 2007, Pages 605-608

  Luo, Hongli ^a,b   Gu, Qiang ^a   Xie, Jianping ^b   Hu, Changhua ^b   Liu, Zhiheng ^a   Huang, Ying ^a  

^a INSTITUTE OF MICROBIOLOGY   (China)

^b SOUTHWEST UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

ARABINOSE; BACTERIAL RNA; DIAMINOPIMELIC ACID; GALACTOSE; MENAQUINONE; MYCOLIC ACID; PHOSPHOLIPID; RNA 16S; SUGAR;

ACTINOBACTERIA; ARTICLE; BACTERIAL GENE; BACTERIAL STRAIN; BACTERIUM ISOLATION; CHINA; CONTROLLED STUDY; GENE SEQUENCE; GENOTYPE; GORDONIA; GORDONIA HYDROPHOBICA; GORDONIA SHANDONGENSIS; GORDONIA SIHWENSIS; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SOIL MICROFLORA; SPECIES IDENTIFICATION; STRAIN DIFFERENCE; TAXONOMY;

CHINA; DNA, BACTERIAL; DNA, RIBOSOMAL; GORDONIA BACTERIUM; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 16S; SOIL MICROBIOLOGY;

GORDONIA HYDROPHOBICA; GORDONIA SIHWENSIS; MYCELIUM (GENUS);

EID: 33947327865     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.64536-0     Document Type: Article

References (37)

1. Chun, J. & Goodfellow, M. (1995). A phylogenetic analysis of genus Nocardia with 16S rRNA gene sequences. Int J Syst Bacteriol 45, 240-245.
2. Collins, M. D. (1985). Isoprenoid quinone analysis in classification and identification. In Chemical Methods in Bacterial Systematics, pp. 267-287. Edited by M. Goodfellow & D. E. Minnikin. London: Academic Press.
3. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
4. Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
5. Goodfellow, M., Isik, K. & Yates, E. (1999). Actinomycete systematics: an unfinished synthesis. Nova Acta Leopold 312 (NF80), 47-82.
6. Gordon, R. E. (1967). The taxonomy of soil bacteria. In The Ecology of Soil Bacteria, pp. 293-321. Edited by T. R. G. Gray & D. Parkinson. Liverpool: Liverpool University Press.
7. Gordon, R. E. & Mihm, J. M. (1957). A comparative study of some strains received as nocardiae. J Bacteriol 73, 15-27.
8. Hasegawa, T., Takizawa, M. & Tanida, S. (1983). A rapid analysis for chemical grouping of aerobic actinomycetes. J Gen Appl Microbiol 29, 319-322.
9. Huang, Y., Qi, W., Lu, Z., Liu, Z. & Goodfellow, M. (2001). Amycolatopsis rubida sp. nov., a new Amycolatopsis species from soil. Int J Syst Evol Microbiol 51, 1093-1097.
10. Iida, S., Taniguchi, H., Kageyama, A., Yazawa, K., Chibana, H., Murata, S., Nomura, F., Kroppenstedt, R. M. & Mikami, Y. (2005). Gordonia otitidis sp. nov., isolated from a patient with external otitis. Int J Syst Evol Microbiol 55, 1871-1876.
11. Kageyama, A., Iida, S., Yazawa, K., Kudo, T., Suzuki, S., Koga, T., Saito, H., Inagawa, H., Wada, A. & other authors (2006). Gordonia araii sp. nov. and Gordonia effusa sp. nov., isolated from patients in Japan. Int J Syst Evol Microbiol 56, 1817-1821.
12. Kämpfer, M. & Kroppenstedt, R. M. (1996). Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa. Can J Microbiol 42, 989-1005.
13. Kim, S. B., Brown, R., Oldfield, C., Gilbert, S. C. & Goodfellow, M. (1999). Gordonia desulfuricans sp. nov., a benzothiophene-desul-phurizing actinomycete. Int J Syst Bacteriol 49, 1845-1851.
14. Kim, K. K., Lee, C. S., Kroppenstedt, R. M., Stackebrandt, E. & Lee, S. T. (2003). Gordonia sihwensis sp. nov., a novel nitrate-reducing bacterium isolated from a wastewater-treatment bioreactor. Int J Syst Evol Microbiol 53, 1427-1433.
15. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
16. Klatte, S., Rainey, F. A. & Kroppenstedt, R. M. (1994). Transfer of Rhodococcus aichiensis Tsukamura 1982 and Nocardia amarae Lechevalier and Lechevalier 1974 to the genus Gordona as Gordona aichiensis comb. nov. and Gordona amarae comb. nov. Int J Syst Bacteriol 44, 769-773.
17. Kumar, S., Tamura, K. & Nei, M. (2004). MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5, 150-163.
18. Kummer, C., Schumann, P. & Stackebrandt, E. (1999). Gordonia alkanivorans sp. nov., isolated from tar-contaminated soil. Int J Syst Bacteriol 49, 1513-1522.
19. Lechevalier, H. A. & Lechevalier, M. P. (1980). The chemotaxonomy of actinomycetes. In Actinomycete Taxonomy (Special Publication no. 6), pp. 277-284. Edited by A. Dietz & D. W. Thayer. Arlington, VA: Society of Industrial Microbiology.
20. Lechevalier, M. P. & Lechevalier, H. A. (1970). Chemical composition as a criterion in the classification of aerobic actinomycetes. Int J Syst Bacteriol 20, 435-443.
21. Lechevalier, M. P., De Bièvre, C. & Lechevalier, H. A. (1977). Chemotaxonomy of aerobic actinomycetes: phospholipid composition. Biochem Syst Ecol 5, 249-260.
22. Linos, A., Steinbüchel, A., Spröer, C. & Kroppenstedt R. M. (1999). Gordonia polyisoprenivorans sp. nov., a rubber-degrading actinomycete isolated from an automobile tyre. Int J Syst Bacteriol 49, 1785-1791.
23. Maldonado, L. A., Stainsby, F. M., Ward, A. C. & Goodfellow, M. (2003). Gordonia sinesedis sp. nov., a novel soil isolate. Antonie van Leeuwenhoek 83, 75-80.
24. Minnikin, D. E., Alshamaony, L. & Goodfellow, M. (1975). Differentiation of Mycobacterium, Nocardia, and related taxa by thin-layer chromatographic analysis of whole-organism methanolysates. J Gen Microbiol 88, 200-204.
25. Minnikin, D. E., O'Donnell, A. G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, A. & Parlett, J. H. (1984). An integrated procedure for the extraction of isoprenoid quinones and polar lipids. J Microbiol Methods 2, 233-241.
26. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
27. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids. Technical Note 101. Newark, DE: MIDI Inc.
28. Shen, F.-T., Goodfellow, M., Jones, A. L., Chen, Y.-P., Arun, A. B., Lai, W.-A., Rekha, P. D. & Young, C.-C. (2006). Gordonia soli sp. nov., a novel actinomycete isolated from soil. Int J Syst Evol Microbiol 56, 2597-2601.
29. Shirling, E. B. & Gottlieb, D. (1966). Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16, 313-340.
30. Soddell, J. A., Stainsby, F. M., Eales, K. L., Seviour, R. J. & Goodfellow, M. (2006). Gordonia defluvii sp. nov., an actinomycete isolated from activated sludge foam. Int J Syst Evol Microbiol 56, 2265-2269.
31. Stackebrandt E., Smida, J. & Collins, M. D. (1988). Evidence of phylogenetic heterogeneity within the genus Rhodococcus: revival of the genus Gordona (Tsukamura). J Gen Appl Microbiol 34, 341-348.
32. Stackebrandt, E., Rainey, F. A. & Ward-Rainey, N. L. (1997). Proposal for a new hierarchic classification system, Actinobacteria classis nov. Int J Syst Bacteriol 47, 479-491.
33. Takeuchi, M. & Hatano, K. (1998). Gordonia rhizosphera sp. nov. isolated from the mangrove rhizosphere. Int J Syst Bacteriol 48, 907-912.
34. Tsukamura, M. (1971). Proposal of a new genus, Gordona, for slightly acid-fast organisms occurring in sputa of patients with pulmonary disease and in soil. J Gen Microbiol 68, 15-26.
35. Wu, C., Lu, X., Qin, M., Wang, Y. & Ruan, J. (1989). Analysis of menaquinone compound in microbial cells by HPLC. Microbiology (Beijing) 16, 176-178 (in Chinese).
36. Xue, Y., Sun, X., Zhou, P., Liu, R., Liang, F. & Ma, Y. (2003). Gordonia paraffinivorans sp. nov., a hydrocarbon-degrading actinomycete isolated from an oil-producing well. Int J Syst Evol Microbiol 53, 1643-1646.
37. Yoon, J.-H., Lee, J. J., Kang, S.-S., Takeuchi, M., Shin, Y. K., Lee, S. T., Kang, K. H. & Park, Y.-H. (2000). Gordonia nitida sp. nov., a bacterium that degrades 3-ethylpyridene and 3-methylpyridine. Int J Syst Evol Microbiol 50, 1203-1210.