Gordonia araii sp. nov. and Gordonia effusa sp. nov., isolated from patients in Japan

International Journal of Systematic and Evolutionary Microbiology

Volumn 56, Issue 8, 2006, Pages 1817-1821

  Kageyama, Akiko ^a,h   Iida, Soji ^a   Yazawa, Katsukiyo ^a   Kudo, Takuji ^b   Suzuki, Shin Ichi ^c   Koga, Takeharu ^d   Saito, Hiromi ^e   Inagawa, Hiroko ^e   Wada, Akihito ^f   Kroppenstedt, Reiner M ^g   Mikami, Yuzuru ^a  

^a CHIBA UNIVERSITY   (Japan)

^b RIKEN BIORESOURCE CENTER   (Japan)

^c MITSUBISHI TANABE PHARMA CORPORATION   (Japan)

^d KURUME UNIVERSITY SCHOOL OF MEDICINE   (Japan)

^e TORANOMON HOSPITAL   (Japan)

^f NATIONAL INSTITUTE OF INFECTIOUS DISEASES   (Japan)

^g LEIBNIZ INSTITUTE DSMZ GERMAN COLLECTION OF MICROORGANISMS AND CELL CULTURES   (Germany)

^h KITASATO UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; BACTERIAL RNA; RNA 16S;

ADULT; AGED; ARTICLE; BACTERIAL GENE; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; CHEMOTAXONOMY; CORYNEBACTERIUM; DNA DNA HYBRIDIZATION; GENE SEQUENCE; GENOTYPE; GORDONIA; GORDONIA AMARAE; GORDONIA ARAII; GORDONIA EFFUSA; GORDONIA HIRSUTA; GORDONIA HYDROPHOBICA; GORDONIA SIHWENSIS; HUMAN; JAPAN; MALE; MICROBIAL MORPHOLOGY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PRIORITY JOURNAL; SPUTUM ANALYSIS; STRAIN DIFFERENCE; TAXONOMY;

BACTERIA (MICROORGANISMS); GORDONIA AMARAE; GORDONIA HIRSUTA; GORDONIA HYDROPHOBICA; GORDONIA SIHWENSIS;

EID: 33747890132     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.64067-0     Document Type: Article

References (22)

1. Collins, M. D., Prouz, T., Goodfellow, M. & Minikkin, D. E. (1977). Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100, 221-230.
2. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
3. Goodfellow, M. (1998). Nocardia and related genera. In Topley and Wilson's Microbiology and Microbial Infections, 9th edn, vol. 2, Systematic Bacteriology, pp. 463-489. Edited by A. Balows & B. I. Duerden. London: Arnold.
4. Goodfellow, M., Isik, K. & Yates, E. (1999). Actinomycete systematics: an unfinished synthesis. Nova Acta Leopold NF80 (312), 47-82.
5. Iida, S., Taniguchi, H., Kageyama, A., Yazawa, K., Chibana, H., Murata, S., Nomura, F., Kroppenstedt, R. M. & Mikami, Y. (2005). Gordonia otitidis sp. nov., isolated from a patient with external otitis. Int J Syst Evol Microbiol 55, 1871-1876.
6. Kageyama, A., Torikoe, K., Iwamoto, M. & 7 other authors (2004a). Nocardia arthritidis sp. nov., a new pathogen isolated from a patient with rheumatoid arthritis in Japan. J Clin Microbiol 42, 2366-2371.
7. Kageyama, A., Poonwan, N., Yazawa, K., Mikami, Y. & Nishimura, K. (2004b). Nocardia asiatica sp. nov. isolated from patients with nocardiosis in Japan and clinical specimens from Thailand. Int J Syst Evol Microbiol 54, 125-130.
8. Kämpfer, P., Andersson, M. A., Rainey, F. A., Kroppenstedt, R. M. & Salkinoja-Salonen, M. (1999). Williamsia muralis gen. nov., sp. nov., isolated from the indoor environment of a children's day care centre. Int J Syst Bacteriol 49, 681-687.
9. Kimura, M. & Ohta, T. (1972). On the stochastic model for estimation of mutation distance between homologous proteins. J Mol Evol 2, 87-90.
10. Klatte, S., Rainey, F. A. & Kroppenstedt, R. M. (1994). Transfer of Rhodococcus aichiensis Tsukamura 1982 and Nocardia amarae Lechevalier and Lechevalier 1974 to the genus Gordona as Gordona aichiensis comb. nov. and Gordona amarae comb. nov. Int J Syst Bacteriol 44, 769-773.
11. Lechevalier, M. P.. & Lechevalier, H. A. (1980). The chemotaxonomy of actinomycetes. In Actinomycete Taxonomy, pp. 227-291. Edited by A. Dietz & D. W. Thayer. Fairfax, VA: Society for Industrial Microbiology.
12. Linos, A., Berekaa, M. M., Steinbüchel, A., Kim, K. K., Spröer, C. & Kroppenstedt, M. (2002). Gordonia westfalica sp. nov., a novel rubber-degrading actinomycete. Int J Syst Evol Microbiol 52, 1133-1139.
13. Miyadoh, M. (2001). Identification procedure at the genus level. In Identification Manual of Actinomycetes, pp. 9-19. Edited by S. Miyadoh, M. Hamada, K. Hotta, T. Kudo, A. Seino, K. Suzuki & A. Yokota. Tokyo: Business Center for Academic Societies Japan.
14. Saito, H. & Miura, K. (1983). Preparation of transforming deoxyribonucleic acid by phenol treatment. Biochim Biophys Acta 72, 619-629.
15. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
16. Stackebrandt, E., Smida, J. & Collins, M. D. (1988). Evidence of phylogenetic heterogeneity within the genus Rhodococcus: revival of the genus Gordona (Tsukamura). J Gen Appl Microbiol 34, 341-348.
17. Stackebrandt, E., Rainey, F. A. & Ward-Rainey, N. L. (1997). Proposal for a new hierarchic classification system, Actinobacteria class nov. Int J Syst Bacteriol 47, 479-491.
18. Staneck, J. L. & Roberts, G. D. (1974). Simplified approach to identification of aerobic actinomycetes by thin-layer chromatography. Appl Microbiol 28, 226-231.
19. Takeuchi, M. & Hatano, K. (1998). Gordonia rhizosphera sp. nov. isolated from the mangrove rhizosphere. Int J Syst Bacteriol 48, 907-912.
20. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
21. Tsukamura, M. (1978). Numerical classification of Rhodococcus (formerly Gordona) organisms recently isolated from sputa of patients; description of Rhodococcus sputi Tsukamura sp. nov. Int J Syst Bacteriol 28, 169-181.
22. Wayne, L. G., Brenner, D. J., Colwell, R. R. & 9 other authors (1987). Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.