Climate and agricultural context shape reproductive mode variation in an aphid crop pest

Molecular Ecology

Volumn 18, Issue 14, 2009, Pages 3050-3061

  Gilabert, A ^a,b   Simon, J C ^a   Mieuzet, L ^a   Halkett, F ^c   Stoeckel, S ^a   Plantegenest, M ^a   Dedryver, C A ^a  

^a AGROCAMPUS OUEST   (France)

^b BAYER AG   (Germany)

^c UNIVERSITÉ DE LORRAINE   (France)

Author keywords

Bayesian assignment; Host alternating aphid; Population structure; Reproductive mode; Rhopalosiphum padi; Sexual vs. asexual lineages

Indexed keywords

MICROSATELLITE DNA;

ALLELE; ANIMAL; APHID; ARTICLE; ASEXUAL REPRODUCTION; BAYES THEOREM; BIOLOGICAL MODEL; CLIMATE; CLUSTER ANALYSIS; DNA SEQUENCE; ECOSYSTEM; FRANCE; GENETIC VARIABILITY; GENETICS; GENOTYPE; GEOGRAPHY; POPULATION GENETICS; PRUNUS; SEASON;

ALLELES; ANIMALS; APHIDS; BAYES THEOREM; CLIMATE; CLUSTER ANALYSIS; ECOSYSTEM; FRANCE; GENETIC VARIATION; GENETICS, POPULATION; GENOTYPE; GEOGRAPHY; MICROSATELLITE REPEATS; MODELS, GENETIC; PRUNUS; REPRODUCTION, ASEXUAL; SEASONS; SEQUENCE ANALYSIS, DNA;

APHIDIDAE; POACEAE; RHOPALOSIPHUM PADI;

EID: 67649651507     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2009.04250.x     Document Type: Article

References (75)

1. Balloux F, Lehmann L, de Meeus T (2003) The population genetics of clonal and partially clonal diploids. Genetics, 164, 1635 1644.
2. Barton NH, Charlesworth B (1998) Why sex and recombination? Science, 281, 1986 1990.
3. Belkhir K, Borsa P, Chiki L, Raufaste N, Bonhomme F (2004) genetix, logiciel sous WindowsTM pour la génétique des populations. Laboratoire Génome, Populations, Interactions. CNRS UMR 5171, Université de Montpellier II, Montpellier, France.
4. Bianchi FJJA, Booij CJH, Tscharntke T (2006) Sustainable pest regulation in agricultural landscapes: a review on landscape composition, biodiversity and natural pest control. Proceedings of the Royal Society of London. Series B: Biological Sciences, 273, 1715 1727.
5. Blackman RL, Eastop VF (2007) Taxonomic issues. In : Aphids as Crop Pests (eds van Emden HF, Harrington R pp. 1 29. CABI, Wallingford, Oxford, UK.
6. Bolnick DI, Fitzpatrick BM (2007) Sympatric speciation: models and empirical evidence. Annual Review of Ecology, Evolution and Systematics, 38, 459 487.
7. Brown PA, Blackman RL (1988) Karyotype variation in the corn leaf aphid, Rhopalosiphum maidis (Fitch), species complex (Hemiptera: Aphididae) in relation to host-plant and morphology. Bulletin of Entomological Research, 78, 351 363.
8. Case TJ, Taper ML (1986) On the coexistence and coevolution of asexual and sexual competitors. Evolution, 40, 366 387.
9. Chapuis M-P, Estoup A (2007) Microsatellite null alleles and estimation of population differentiation. Molecular Biology and Evolution, 24, 621 631.
10. Chapuis M-P, Lecoq M, Michalakis Y et al. (2008) Do outbreaks affect genetic population structure? A worldwide survey in Locusta migratoria, a pest plagued by microsatellite null alleles. Molecular Ecology, 17, 3640 3653.
11. Dedryver CA, Hullé M, Le Gallic JF, Caillaud M, Simon JC (2001) Coexistence in space and time of sexual and asexual populations of the cereal aphid Sitobion avenae. Oecologia, 128, 379 388.
12. Dedryver CA, Le Gallic JF, Haack L et al. (2008) Seasonal and annual genotypic variation and the effect of climate on population genetic structure of the cereal aphid Sitobion avenae in northern France. Bulletin of Entomological Research, 98, 159 168.
13. Delmotte F, Leterme N, Gauthier JP, Rispe C, Simon JC (2002) Genetic architecture of sexual and asexual populations of the aphid Rhopalosiphum padi based on allozyme and microsatellite markers. Molecular Ecology, 11, 711 723.
14. Delmotte F, Sabatier-Munoz B, Prunier-Leterme N et al. (2003) Phylogenetic evidence for hybrid origins of asexual lineages in an aphid species. Evolution, 57, 1291 1303.
15. Dempster AP, Laird NM, Rubin DB (1977) Maximum likelihood from incomplete data via the EM algorithm. Journal of Royal Statistical Society B, 39, 1 38.
16. Dixon AFG (1971) The life-cycle and host preferences of the bird cherry-oat aphid, Rhopalosiphum padi L., and their bearing on the theories of host alternation in aphids. Annals of Applied Biology, 68, 135 147.
17. Dixon AFG (1998) Aphid Ecology, 2nd edn. Blackie and Son Ltd, Cornwall, UK.
18. Dixon AFG, Glen DM (1971) Morph determination in the bird cherry-oat aphid, Rhopalosiphum padi (L.). Annals of Applied Biology, 68, 11 21.
19. Doncaster CP, Pound GE, Cox SJ (2000) The ecological cost of sex. Nature, 404, 281 285.
20. van Emden HF, Harrington R (2007) Aphids as Crop Pests. CABI, Wallingford, Oxford, UK.
21. Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software structure: a simulation study. Molecular Ecology, 14, 2611 2620.
22. Excoffier L, Smouse PE, Quattro JM (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics, 131, 479 491.
23. Excoffier L, Laval G, Schneider S (2005) arlequin, ver. 3.0: an integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online, 1, 47 50.
24. Falush D, Stephens M, Pritchard JK (2003) Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics, 164, 1567 1587.
25. Frantz A, Plantegenest M, Simon JC (2006) Temporal habitat variability and the maintenance of sex in host populations of the pea aphid. Proceedings of the Royal Society of London. Series B: Biological Sciences, 273, 2887 2891.
26. Glesener RR, Tilman D (1978) Sexuality and the components of environmental uncertainty: clues from geographical parthenogenesis in terrestrial animals. American Naturalist, 112, 659 673.
27. Goudet J (1995) fstat (vers. 1. 2): a computer program to calculate F-statistics. Journal of Heredity, 86, 485 486.
28. Goudet J (2001) fstat, a Program to Estimate and Test Gene Diversities and Fixation Indices (Version 2.9.3). Available from http://www.unil.ch/popgen/ softwares/fstat.html. Updated from Goudet (1995).
29. Guillemaud T, Mieuzet L, Simon JC (2003) Spatial and temporal genetic variability in French populations of the peach-potato aphid, Myzus persicae. Heredity, 91, 143 152.
30. Haack L, Simon JC, Gauthier JP, Plantegenest M, Dedryver CA (2000) Evidence for predominant clones in a cyclically parthenogenetic organism provided by combined demographic and genetic analyses. Molecular Ecology, 9, 2055 2066.
31. Haag CR, Ebert D (2004) A new hypothesis to explain geographic parthenogenesis. Annales Zoologici Fennici, 41, 539 544.
32. Halkett F, Harrington R, Hullé M et al. (2004) Dynamics of production of sexual forms in aphids: theoretical and experimental evidence for adaptive "coin-flipping" plasticity. The American Naturalist, 163, 112 125.
33. Halkett F, Plantegenest M, Prunier-Leterme N et al. (2005) Admixed sexual and facultatively asexual aphid lineages at mating sites. Molecular Ecology, 14, 325 336.
34. Halkett F, Plantegenest M, Bonhomme J, Simon JC (2008) Gene flow between sexual and facultatively asexual lineages of an aphid species and the maintenance of reproductive mode variation. Molecular Ecology, 17, 2998 3007.
35. Hamilton WD (1980) Sex versus non-sex versus parasite. Oikos, 35, 282 290.
36. Hamilton WD, Axelrod R, Tanese R (1990) Sexual reproduction as an adaption to resist parasites (a review). Proceedings of the National Academy of Sciences of the Unites States of America, 87, 3566 3573.
37. Hoffmann AA, Reynolds KT, Nash MA, Weeks AR (2008) A high incidence of parthenogenesis in agricultural pests. Proceedings of the Royal Society of London. Series B: Biological Sciences, 275, 2473 2481.
38. Kasprowicz L, Malloch G, Foster S et al. (2008a) Clonal turnover of MACE-carrying peach-potato aphids (Myzus persicae (Sulzer), Homoptera: Aphididae) colonizing Scotland. Agricultural and Forest Entomology, 10, 91 100.
39. Kasprowicz L, Malloch G, Pickup J, Fenton B (2008b) Spatial and temporal dynamics of Myzus persicae clones in fields and suction traps. Agricultural and Forest Entomology, 10, 91 100.
40. Kondrashov AS (1993) Classification of hypotheses on the advantage of amphimixis. Journal of Ecology, 84, 372 387.
41. Lively CM, Craddock C, Vrijenhoek RC (1990) Red Queen hypothesis supported by parasitism in sexual and clonal fish. Nature, 344, 864 867.
42. Llewellyn KS, Loxdale HD, Harrington R, Clark SJ, Sunnucks P (2004) Evidence for gene flow and local clonal selection in field populations of the grain aphid (Sitobion avenae) in Britain revealed using microsatellites. Heredity, 93, 143 153.
43. Loxdale HD, Brookes CP (1988) Electrophoretic study of enzymes from cereal aphid populations. V: Spatial and temporal genetic similarity of holocyclic populations of the bird-cherry oat aphid, Rhopalosiphum padi (L.) (Hemiptera: Aphididae), in Britain. Bulletin of Entomological Research, 78, 241 249.
44. Loxdale HD, Lushai G (2003) Rapid changes in clonal lines: the death of a 'sacred cow'. Biological Journal of the Linnean Society, 79, 3 16.
45. Loxdale HD, Lushai G (2007) Population genetic issues: the unfolding story using molecular markers. In : Aphids as Crop Pests (eds Van Emden HF, Harrington R pp. 31 67. CABI, Wallingford, Oxford, UK.
46. Lynch M (1984) Destabilizing hybridization, general-purpose genotypes and geographic parthenogenesis. The Quarterly Review of Biology, 59, 257 290.
47. de Meeus T, Lehmann L, Balloux F (2006) Molecular epidemiology of clonal diploids: a quick overview and a short DIY (do it yourself) notice. Infection, Genetics and Evolution, 6, 163 170.
48. Papura D, Simon JC, Halkett F et al. (2003) Predominance of sexual reproduction in Romanian populations of the aphid Sitobion avenae inferred from phenotypic and genetic structure. Heredity, 90, 397 404.
49. Pound GE, Doncaster CP, Cox SJ (2002) A Lotka-Volterra model of coexistence between a sexual population and multiple asexual clones. Journal of Theoretical Biology, 217, 535 545.
50. Pound GE, Cox SJ, Doncaster CP (2004) The accumulation of deleterious mutations within the frozen niche variation hypothesis. Journal of Evolutionary Biology, 17, 651 662.
51. Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics, 155, 945 959.
52. Rice WR (1989) Analyzing tables of statistical tests. Evolution, 43, 223 225.
53. Rispe C, Pierre JS (1998) Coexistence between cyclical parthenogens, obligate parthenogens, and intermediates in a fluctuating environment. Journal of Theoretical Biology, 195, 97 110.
54. Rispe C, Pierre JS, Simon JC, Gouyon PH (1998) Models of sexual and asexual coexistence in aphids based on constraints. Journal of Evolutionary Biology, 11, 685 701.
55. Ruiz-Montoya L, Nuñez-Farfan J, Vargas J (2003) Host-associated genetic structure of Mexican populations of the cabbage aphid Brevicoryne brassicae L. (Homoptera: Aphididae). Heredity, 91, 415 421.
56. Shufran KA, Burd JD, Anstead JA, Lushai G (2000) Mitochondrial DNA sequence divergence among greenbug (Homoptera: Aphididae) biotypes: evidence for host-adapted races. Insect Molecular Biology, 9, 179 184.
57. Simon JC, Baumann S, Sunnucks P et al. (1999) Reproductive mode and population genetic structure of the cereal aphid Sitobion avenae studied using phenotypic and microsatellite markers. Molecular Ecology, 8, 531 545.
58. Simon JC, Leterme N, Delmotte F, Martin O, Estoup A (2001) Isolation and characterization of microsatellite loci in the aphid species, Rhopalosiphum padi. Molecular Ecology Notes, 1, 4 5.
59. Simon JC, Rispe C, Sunnucks P (2002) Ecology and evolution of sex in aphids. Trends in Ecology & Evolution, 17, 34 39.
60. Sunnucks P, Hales DF (1996) Numerous transposed sequences of mitochondrial cytochrome oxidase I-II in aphids of the genus Sitobion (Hemiptera: Aphididae). Molecular Biology and Evolution, 13, 510 524.
61. Thies C, Steffan-Dewenter I, Tscharntke T (2003) Effects of landscape context on herbivory and parasitism at different spatial scales. Oikos, 101, 18 25.
62. Van Oosterhout C, Hutchinson WF, Wills DPM, Shipley P (2004) microchecker: software for identifying and correcting genotyping errors in microsatellite data. Molecular Ecology Notes, 4, 535 538.
63. Vandel A (1928) La parthénogénèse géographique. Contribution à l'étude biologique et cytologique de la parthénogénèse naturelle. Bulletin Biologique de la France et de la Belgique, 62, 164 281.
64. Via S (1999) Reproductive isolation between sympatric races of pea aphids. I. Gene flow restriction and habitat choice. Evolution, 53, 1446 1457.
65. Vialatte A, Dedryver CA, Simon JC, Galman M, Plantegenest M (2005) Limited genetic exchanges between populations of an insect pest living on uncultivated and related cultivated host plants. Proceedings of the Royal Society of London. Series B: Biological Sciences, 272, 1075 1082.
66. Vorburger C, Lancaster M, Sunnucks P (2003a) Environmentally related patterns of reproductive modes in the aphid Myzus persicae and the predominance of two 'superclones' in Victoria, Australia. Molecular Ecology, 12, 3493 3504.
67. Vorburger C, Sunnucks P, Ward SA (2003b) Explaining the coexistence of asexuals with their sexual progenitors: no evidence for general-purpose genotypes in obligate parthenogens of the peach-potato aphid, Myzus persicae. Ecology Letters, 6, 1091 1098.
68. Vrijenhoek RC (1979) Factors affecting clonal diversity and coexistence. American Zoologist, 19, 787 797.
69. Vrijenhoek RC (1984) Ecological differentiation among clones: the frozen niche variation model. In : Population Biology and Evolution (eds Wöhrmann KL, Loeschcke V pp. 217 231. Springer, Heidelberg.
70. Waits LP, Luikart G, Taberlet P (2001) Estimating the probability of identity among genotypes in natural populations: cautions and guidelines. Molecular Ecology, 10, 249 256.
71. Wattier R, Engel CR, Saumitou-Laprade P, Valero M (1998) Short allele dominance as a source of heterozygote deficiency at microsatellite loci: experimental evidence at the dinucleotide locus Gv1CT in Gracilaria gracilis (Rhodophyta). Molecular Ecology, 7, 1569 1573.
72. Weir BS, Cockerham CC (1984) Estimating F-statistics for the analysis of population structure. Evolution, 38, 1358 1370.
73. West SA, Lively CM, Read AF (1999) A pluralist approach to sex and recombination. Journal of Evolutionary Biology, 12, 1003 1012.
74. Williams GC (1975) Sex and Evolution. Princeton University Press, Princeton, NJ, USA.
75. Wilson ACC, Sunnucks P, Hales DF (1999) Microevolution, low clonal diversity and genetic affinities of parthenogenetic Sitobion aphids in New Zealand. Molecular Ecology, 8, 1655 1666.