Web-based software for rapid top-down proteomic identification of protein biomarkers, with implications for bacterial identification

Applied and Environmental Microbiology

Volumn 75, Issue 13, 2009, Pages 4341-4353

  Fagerquist, Clifton K ^a   Garbus, Brandon R ^a   Williams, Katherine E ^b   Bates, Anna H ^a   Boyle, Síobhán ^a   Harden, Leslie A ^a  

^a WESTERN REGIONAL RESEARCH CENTER   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ASPARTIC ACIDS; BACTERIAL CELLS; BACTERIAL IDENTIFICATIONS; BACTERIAL PROTEIN; C TERMINUS; CALIBRATION DRIFT; CAMPYLOBACTER; FRAGMENT IONS; GLUTAMIC ACID; IN-SILICO; MASS ANALYZERS; MATCHING SCORE; MATRIX-ASSISTED LASER DESORPTION IONIZATION; P-VALUE; POLYPEPTIDE BACKBONES; PROTEOMIC IDENTIFICATION; PROTEOMICS; RAPID IDENTIFICATION; TANDEM MASS SPECTROMETRY; TESTING ALGORITHM; TIME OF FLIGHT; TOPDOWN; WEB-BASED SOFTWARES;

BACTERIA; BACTERIOLOGY; COMPUTER SOFTWARE; DESORPTION; ERROR ANALYSIS; MASS SPECTROMETERS; MASS SPECTROMETRY; MOLECULAR BIOLOGY; MOLECULAR WEIGHT; ORGANIC ACIDS; PROTEINS; WORLD WIDE WEB;

IONS;

ASPARTIC ACID; BACTERIAL PROTEIN; BIOLOGICAL MARKER; CARBON DIOXIDE CONCENTRATING MECHANISM PROTEIN; GLUTAMIC ACID; MULTIDRUG RESISTANCE PROTEIN; PROLINE; RIBOSOME PROTEIN; THIOREDOXIN; UNCLASSIFIED DRUG;

ALGORITHM; BACTERIUM; BIOMARKER; DATABASE; DESORPTION; IDENTIFICATION METHOD; IONIZATION; MASS SPECTROMETRY; PROTEIN; PROTEOMICS; SOFTWARE;

ACCURACY; ALGORITHM; AMINO ACID SEQUENCE; AMINO TERMINAL SEQUENCE; ARTICLE; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; CAMPYLOBACTER; CAMPYLOBACTER COLI; CAMPYLOBACTER LARI; CAMPYLOBACTER UPSALIENSIS; CARBON DIOXIDE CONCENTRATING MECHANISM; CARBOXY TERMINAL SEQUENCE; CELL LYSATE; COMPUTER PROGRAM; CONTROLLED STUDY; INTERNET; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; MOLECULAR WEIGHT; NONHUMAN; PROTEIN ANALYSIS; PROTEOMICS; TANDEM MASS SPECTROMETRY;

BACTERIA; BACTERIAL PROTEINS; BIOLOGICAL MARKERS; CAMPYLOBACTER; INTERNET; MASS SPECTROMETRY; PROTEOMICS; SOFTWARE;

BACTERIA (MICROORGANISMS); CAMPYLOBACTER;

EID: 67649573632     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.00079-09     Document Type: Article

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