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Volumn 4774 LNBI, Issue , 2007, Pages 337-348

Understanding prediction systems for HLA-binding peptides and T-Cell epitope identification

Author keywords

[No Author keywords available]

Indexed keywords

CELL PROLIFERATION; COMBINATORIAL MATHEMATICS; GENE EXPRESSION; LINEAR SYSTEMS; PEPTIDES;

EID: 38349072025     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-540-75286-8_32     Document Type: Conference Paper
Times cited : (8)

References (26)
  • 1
    • 0032825083 scopus 로고    scopus 로고
    • Computational binding assays of antigenic peptides. Letters in Peptide
    • Brusic, V., Zeleznikow, J.: Computational binding assays of antigenic peptides. Letters in Peptide Sci. 6, 313-324 (1999)
    • (1999) Sci , vol.6 , pp. 313-324
    • Brusic, V.1    Zeleznikow, J.2
  • 2
    • 33749528390 scopus 로고    scopus 로고
    • Confronting complexity: Real-world immunodominance in antiviral CD8+ T cell responses
    • Yewdell, J.W.: Confronting complexity: real-world immunodominance in antiviral CD8+ T cell responses. Immunity 25, 533-543 (2006)
    • (2006) Immunity , vol.25 , pp. 533-543
    • Yewdell, J.W.1
  • 3
    • 33745584371 scopus 로고    scopus 로고
    • Peters, B., Bui, H.H., Frankild, S., Nielson, M., Lundegaard, C., Kostem, E., Basch, D., Lamberth, K., Harndahl, M., Fleri, W., Wilson, S.S., Sidney, J., Lund, O., Buus, S., Sette, A.: A community resource benchmarking predictions of peptide binding to MHC-I molecules. PLoS Comput. Biol. 2(6), 574-584 (2006)
    • Peters, B., Bui, H.H., Frankild, S., Nielson, M., Lundegaard, C., Kostem, E., Basch, D., Lamberth, K., Harndahl, M., Fleri, W., Wilson, S.S., Sidney, J., Lund, O., Buus, S., Sette, A.: A community resource benchmarking predictions of peptide binding to MHC-I molecules. PLoS Comput. Biol. 2(6), 574-584 (2006)
  • 5
    • 0028052724 scopus 로고
    • Scheme for ranking potential HLA-A2 binding peptides based on independent binding of individual peptide side-chains
    • Parker, K.C., Bednarek, M.A., Coligan, J.E.: Scheme for ranking potential HLA-A2 binding peptides based on independent binding of individual peptide side-chains. J. Immunol. 152(1), 163-175 (1994)
    • (1994) J. Immunol , vol.152 , Issue.1 , pp. 163-175
    • Parker, K.C.1    Bednarek, M.A.2    Coligan, J.E.3
  • 7
    • 7944237425 scopus 로고    scopus 로고
    • MHCPred: Bringing a quantitative dimension to the online prediction of MHC binding
    • Guan, P., Doytchinova, I.A., Zygouri, C., Flower, D.R.: MHCPred: bringing a quantitative dimension to the online prediction of MHC binding. Applied Bioinformatics 2(1), 63-66 (2003)
    • (2003) Applied Bioinformatics , vol.2 , Issue.1 , pp. 63-66
    • Guan, P.1    Doytchinova, I.A.2    Zygouri, C.3    Flower, D.R.4
  • 8
    • 25444476693 scopus 로고    scopus 로고
    • Generating quantitative models describing the sequence specificity of biological processes with the stabilized matrix method
    • Peters, B., Sette, A.: Generating quantitative models describing the sequence specificity of biological processes with the stabilized matrix method. BMC Bioinformatics 6(132) (2005)
    • (2005) BMC Bioinformatics , vol.6 , Issue.132
    • Peters, B.1    Sette, A.2
  • 12
    • 0032387825 scopus 로고    scopus 로고
    • Predicting peptides that bind to MHC molecules using supervised learning of hidden Markov models
    • Mamitsuka, H.: Predicting peptides that bind to MHC molecules using supervised learning of hidden Markov models. Proteins 33(4), 460-474 (1998)
    • (1998) Proteins , vol.33 , Issue.4 , pp. 460-474
    • Mamitsuka, H.1
  • 13
    • 0142174642 scopus 로고    scopus 로고
    • Prediction of MHC class I binding peptides, using SVMHC
    • Dönnes, P., Elofsson, A.: Prediction of MHC class I binding peptides, using SVMHC. BMC Bioinformatics 3(25) (2002)
    • (2002) BMC Bioinformatics , vol.3 , Issue.25
    • Dönnes, P.1    Elofsson, A.2
  • 14
    • 0142148183 scopus 로고    scopus 로고
    • Application of support vector machines for T-cell epitopes prediction
    • Zhao, Y., Pinilla, C., Valmori, D., Martin, R., Simon, R.: Application of support vector machines for T-cell epitopes prediction. Bioinformatics 19, 1978-1984 (2003)
    • (2003) Bioinformatics , vol.19 , pp. 1978-1984
    • Zhao, Y.1    Pinilla, C.2    Valmori, D.3    Martin, R.4    Simon, R.5
  • 15
    • 18244389000 scopus 로고    scopus 로고
    • Peptide binding at class I major histocompatibility complex scored with linear functions and support vector machines
    • Riedesel, H., Kolbeck, B., Schmetzer, O., Knapp, E.W.: Peptide binding at class I major histocompatibility complex scored with linear functions and support vector machines. Genome Informatics 15(1), 198-212 (2004)
    • (2004) Genome Informatics , vol.15 , Issue.1 , pp. 198-212
    • Riedesel, H.1    Kolbeck, B.2    Schmetzer, O.3    Knapp, E.W.4
  • 16
    • 26944447129 scopus 로고    scopus 로고
    • Prediction of T-cell epitopes using biosupport vector machines
    • Yang, Z.R., Johnson, F.C.: Prediction of T-cell epitopes using biosupport vector machines. J. Chem. Inf. Model 45(5), 1424-1428 (2005)
    • (2005) J. Chem. Inf. Model , vol.45 , Issue.5 , pp. 1424-1428
    • Yang, Z.R.1    Johnson, F.C.2
  • 17
    • 26444499469 scopus 로고    scopus 로고
    • Predictive vaccinology: Optimisation of predictions using support vector machine classifiers
    • Gallagher, M, Hogan, J.P, Maire, F, eds, IDEAL 2005, Springer, Heidelberg
    • Bozic, I., Zhang, G.L., Brusic, V.: Predictive vaccinology: optimisation of predictions using support vector machine classifiers. In: Gallagher, M., Hogan, J.P., Maire, F. (eds.) IDEAL 2005. LNCS, vol. 3578, pp. 375-381. Springer, Heidelberg (2005)
    • (2005) LNCS , vol.3578 , pp. 375-381
    • Bozic, I.1    Zhang, G.L.2    Brusic, V.3
  • 18
    • 33847710294 scopus 로고    scopus 로고
    • Prediction of supertype-specific HLA class I binding peptides using support vector machines
    • Zhang, G.L., Bozic, I., Kwoh, C.K., August, J.T., Brusic, V.: Prediction of supertype-specific HLA class I binding peptides using support vector machines. Journal of Immunological Methods 320(1-2) (2007)
    • (2007) Journal of Immunological Methods , vol.320 , Issue.1-2
    • Zhang, G.L.1    Bozic, I.2    Kwoh, C.K.3    August, J.T.4    Brusic, V.5
  • 19
    • 33748792816 scopus 로고    scopus 로고
    • Prediction of MHC-binding peptides of flexible lengths from sequence-derived structural and physicochemical properties
    • Cui, J., Han, L.Y., Lin, H.H., Zhang, H.L., Tang, Z.Q.: Prediction of MHC-binding peptides of flexible lengths from sequence-derived structural and physicochemical properties. Molecular Immunology 44(5), 866-877 (2007)
    • (2007) Molecular Immunology , vol.44 , Issue.5 , pp. 866-877
    • Cui, J.1    Han, L.Y.2    Lin, H.H.3    Zhang, H.L.4    Tang, Z.Q.5
  • 21
    • 0036042580 scopus 로고    scopus 로고
    • Methods for prediction of peptide binding to MHC molecules: A comparative study
    • Yu, K., Petrovsky, N., Schonbach, C., Koh, J.Y., Brusic, V.: Methods for prediction of peptide binding to MHC molecules: a comparative study. Molecular Medicine 8(3), 137-148 (2002)
    • (2002) Molecular Medicine , vol.8 , Issue.3 , pp. 137-148
    • Yu, K.1    Petrovsky, N.2    Schonbach, C.3    Koh, J.Y.4    Brusic, V.5
  • 22
    • 34250196006 scopus 로고    scopus 로고
    • Strength in numbers: Achieving greater accuracy in MHC-I binding prediction by combining the results from multiple prediction tools
    • Trost, B., Bickis, M., Kusalik, A.: Strength in numbers: achieving greater accuracy in MHC-I binding prediction by combining the results from multiple prediction tools. Immunome Research 3, 5 (2007)
    • (2007) Immunome Research , vol.3 , pp. 5
    • Trost, B.1    Bickis, M.2    Kusalik, A.3
  • 23
    • 17844401477 scopus 로고    scopus 로고
    • Mapping and binding analysis of peptides derived from the tumorassociated antigen survivin for eight HLA alleles
    • Bachinsky, M.M., Guillen, D.E., Patel, S.R., Singleton, J., Chen, C., Soltis, D.A., Tussey, L.G.: Mapping and binding analysis of peptides derived from the tumorassociated antigen survivin for eight HLA alleles. Cancer Immunity 5, 1-9 (2005)
    • (2005) Cancer Immunity , vol.5 , pp. 1-9
    • Bachinsky, M.M.1    Guillen, D.E.2    Patel, S.R.3    Singleton, J.4    Chen, C.5    Soltis, D.A.6    Tussey, L.G.7
  • 24
    • 33746290181 scopus 로고    scopus 로고
    • Survivin-derived peptide epitopes and their role for induction of antitumor immunity in hematological malignancies
    • Friedrichs, B., Siegel, S., Andersen, M.H., Schmitz, N., Zeis, M.: Survivin-derived peptide epitopes and their role for induction of antitumor immunity in hematological malignancies. Leukemia & Lymphoma 47(6), 978-985 (2006)
    • (2006) Leukemia & Lymphoma , vol.47 , Issue.6 , pp. 978-985
    • Friedrichs, B.1    Siegel, S.2    Andersen, M.H.3    Schmitz, N.4    Zeis, M.5
  • 26
    • 33745593715 scopus 로고    scopus 로고
    • Complete remission of liver metastasis of pancreatic cancer under vaccination with a HLA-A2 restricted peptide derived from the universal tumor antigen survivin
    • Wobser, M., Keikavoussi, P., Kunzmann, V., Weininger, M., Andersen, M.H., Becker, J.C.: Complete remission of liver metastasis of pancreatic cancer under vaccination with a HLA-A2 restricted peptide derived from the universal tumor antigen survivin. Cancer Immunology and Immunotherapy 55(10), 1294-1298 (2006)
    • (2006) Cancer Immunology and Immunotherapy , vol.55 , Issue.10 , pp. 1294-1298
    • Wobser, M.1    Keikavoussi, P.2    Kunzmann, V.3    Weininger, M.4    Andersen, M.H.5    Becker, J.C.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.