-
1
-
-
0032825083
-
Computational binding assays of antigenic peptides. Letters in Peptide
-
Brusic, V., Zeleznikow, J.: Computational binding assays of antigenic peptides. Letters in Peptide Sci. 6, 313-324 (1999)
-
(1999)
Sci
, vol.6
, pp. 313-324
-
-
Brusic, V.1
Zeleznikow, J.2
-
2
-
-
33749528390
-
Confronting complexity: Real-world immunodominance in antiviral CD8+ T cell responses
-
Yewdell, J.W.: Confronting complexity: real-world immunodominance in antiviral CD8+ T cell responses. Immunity 25, 533-543 (2006)
-
(2006)
Immunity
, vol.25
, pp. 533-543
-
-
Yewdell, J.W.1
-
3
-
-
33745584371
-
-
Peters, B., Bui, H.H., Frankild, S., Nielson, M., Lundegaard, C., Kostem, E., Basch, D., Lamberth, K., Harndahl, M., Fleri, W., Wilson, S.S., Sidney, J., Lund, O., Buus, S., Sette, A.: A community resource benchmarking predictions of peptide binding to MHC-I molecules. PLoS Comput. Biol. 2(6), 574-584 (2006)
-
Peters, B., Bui, H.H., Frankild, S., Nielson, M., Lundegaard, C., Kostem, E., Basch, D., Lamberth, K., Harndahl, M., Fleri, W., Wilson, S.S., Sidney, J., Lund, O., Buus, S., Sette, A.: A community resource benchmarking predictions of peptide binding to MHC-I molecules. PLoS Comput. Biol. 2(6), 574-584 (2006)
-
-
-
-
4
-
-
0033388725
-
SYFPEITHI: Database for MHC ligands and peptide motifs
-
Rammensee, H.G., Bachmann, J., Emmerich, N.P., Bachor, O.A., Stevanovic, S.: SYFPEITHI: database for MHC ligands and peptide motifs. Immunogenetics 50(34), 213-219 (1999)
-
(1999)
Immunogenetics
, vol.50
, Issue.34
, pp. 213-219
-
-
Rammensee, H.G.1
Bachmann, J.2
Emmerich, N.P.3
Bachor, O.A.4
Stevanovic, S.5
-
5
-
-
0028052724
-
Scheme for ranking potential HLA-A2 binding peptides based on independent binding of individual peptide side-chains
-
Parker, K.C., Bednarek, M.A., Coligan, J.E.: Scheme for ranking potential HLA-A2 binding peptides based on independent binding of individual peptide side-chains. J. Immunol. 152(1), 163-175 (1994)
-
(1994)
J. Immunol
, vol.152
, Issue.1
, pp. 163-175
-
-
Parker, K.C.1
Bednarek, M.A.2
Coligan, J.E.3
-
6
-
-
0033866228
-
An automated prediction of MHC class I-binding peptides based on positional scanning with peptide libraries
-
Udaka, K., Wiesmuller, K.H., Kienle, S., Jung, G., Tamamura, H., Yamagishi, H., Okumura, K., Walden, P., Suto, T., Kawasaki, T.: An automated prediction of MHC class I-binding peptides based on positional scanning with peptide libraries. Immunogenetics 51(10), 816-828 (2000)
-
(2000)
Immunogenetics
, vol.51
, Issue.10
, pp. 816-828
-
-
Udaka, K.1
Wiesmuller, K.H.2
Kienle, S.3
Jung, G.4
Tamamura, H.5
Yamagishi, H.6
Okumura, K.7
Walden, P.8
Suto, T.9
Kawasaki, T.10
-
7
-
-
7944237425
-
MHCPred: Bringing a quantitative dimension to the online prediction of MHC binding
-
Guan, P., Doytchinova, I.A., Zygouri, C., Flower, D.R.: MHCPred: bringing a quantitative dimension to the online prediction of MHC binding. Applied Bioinformatics 2(1), 63-66 (2003)
-
(2003)
Applied Bioinformatics
, vol.2
, Issue.1
, pp. 63-66
-
-
Guan, P.1
Doytchinova, I.A.2
Zygouri, C.3
Flower, D.R.4
-
8
-
-
25444476693
-
Generating quantitative models describing the sequence specificity of biological processes with the stabilized matrix method
-
Peters, B., Sette, A.: Generating quantitative models describing the sequence specificity of biological processes with the stabilized matrix method. BMC Bioinformatics 6(132) (2005)
-
(2005)
BMC Bioinformatics
, vol.6
, Issue.132
-
-
Peters, B.1
Sette, A.2
-
9
-
-
21344466799
-
Automated generation and evaluation of specific MHC binding predictive tools: ARB matrix applications
-
Bui, H.H., Sidney, J., Peters, B., Sathiamurthy, M., Sinichi, A., Purton, K.A., Mothe, B.R., Chisari, F.V., Watkins, D.I., Sette, A.: Automated generation and evaluation of specific MHC binding predictive tools: ARB matrix applications. Immunogenetics 57(5), 304-314 (2005)
-
(2005)
Immunogenetics
, vol.57
, Issue.5
, pp. 304-314
-
-
Bui, H.H.1
Sidney, J.2
Peters, B.3
Sathiamurthy, M.4
Sinichi, A.5
Purton, K.A.6
Mothe, B.R.7
Chisari, F.V.8
Watkins, D.I.9
Sette, A.10
-
10
-
-
10744222046
-
Sensitive quantitative predictions of peptide-MHC binding by a 'Query by Committee' artificial neural network approach
-
Buus, S., Lauemoller, S.L., Worning, P., Kesmir, C., Frimurer, T., Corbet, S., Fomsgaard, A., Hilden, J., Holm, A., Brunak, S.: Sensitive quantitative predictions of peptide-MHC binding by a 'Query by Committee' artificial neural network approach. Tissue Antigens 62(5), 378-384 (2003)
-
(2003)
Tissue Antigens
, vol.62
, Issue.5
, pp. 378-384
-
-
Buus, S.1
Lauemoller, S.L.2
Worning, P.3
Kesmir, C.4
Frimurer, T.5
Corbet, S.6
Fomsgaard, A.7
Hilden, J.8
Holm, A.9
Brunak, S.10
-
11
-
-
0034952463
-
Efficient discovery of immune response targets by cyclical refinement of QSAR models of peptide binding
-
Brusic, V., Bucci, K., Schonbach, C., Petrovsky, N., Zeleznikow, J., Kazura, J.W.: Efficient discovery of immune response targets by cyclical refinement of QSAR models of peptide binding. Journal of Molecular Graphics and Modelling 19(5), 405-411 (2001)
-
(2001)
Journal of Molecular Graphics and Modelling
, vol.19
, Issue.5
, pp. 405-411
-
-
Brusic, V.1
Bucci, K.2
Schonbach, C.3
Petrovsky, N.4
Zeleznikow, J.5
Kazura, J.W.6
-
12
-
-
0032387825
-
Predicting peptides that bind to MHC molecules using supervised learning of hidden Markov models
-
Mamitsuka, H.: Predicting peptides that bind to MHC molecules using supervised learning of hidden Markov models. Proteins 33(4), 460-474 (1998)
-
(1998)
Proteins
, vol.33
, Issue.4
, pp. 460-474
-
-
Mamitsuka, H.1
-
13
-
-
0142174642
-
Prediction of MHC class I binding peptides, using SVMHC
-
Dönnes, P., Elofsson, A.: Prediction of MHC class I binding peptides, using SVMHC. BMC Bioinformatics 3(25) (2002)
-
(2002)
BMC Bioinformatics
, vol.3
, Issue.25
-
-
Dönnes, P.1
Elofsson, A.2
-
14
-
-
0142148183
-
Application of support vector machines for T-cell epitopes prediction
-
Zhao, Y., Pinilla, C., Valmori, D., Martin, R., Simon, R.: Application of support vector machines for T-cell epitopes prediction. Bioinformatics 19, 1978-1984 (2003)
-
(2003)
Bioinformatics
, vol.19
, pp. 1978-1984
-
-
Zhao, Y.1
Pinilla, C.2
Valmori, D.3
Martin, R.4
Simon, R.5
-
15
-
-
18244389000
-
Peptide binding at class I major histocompatibility complex scored with linear functions and support vector machines
-
Riedesel, H., Kolbeck, B., Schmetzer, O., Knapp, E.W.: Peptide binding at class I major histocompatibility complex scored with linear functions and support vector machines. Genome Informatics 15(1), 198-212 (2004)
-
(2004)
Genome Informatics
, vol.15
, Issue.1
, pp. 198-212
-
-
Riedesel, H.1
Kolbeck, B.2
Schmetzer, O.3
Knapp, E.W.4
-
16
-
-
26944447129
-
Prediction of T-cell epitopes using biosupport vector machines
-
Yang, Z.R., Johnson, F.C.: Prediction of T-cell epitopes using biosupport vector machines. J. Chem. Inf. Model 45(5), 1424-1428 (2005)
-
(2005)
J. Chem. Inf. Model
, vol.45
, Issue.5
, pp. 1424-1428
-
-
Yang, Z.R.1
Johnson, F.C.2
-
17
-
-
26444499469
-
Predictive vaccinology: Optimisation of predictions using support vector machine classifiers
-
Gallagher, M, Hogan, J.P, Maire, F, eds, IDEAL 2005, Springer, Heidelberg
-
Bozic, I., Zhang, G.L., Brusic, V.: Predictive vaccinology: optimisation of predictions using support vector machine classifiers. In: Gallagher, M., Hogan, J.P., Maire, F. (eds.) IDEAL 2005. LNCS, vol. 3578, pp. 375-381. Springer, Heidelberg (2005)
-
(2005)
LNCS
, vol.3578
, pp. 375-381
-
-
Bozic, I.1
Zhang, G.L.2
Brusic, V.3
-
18
-
-
33847710294
-
Prediction of supertype-specific HLA class I binding peptides using support vector machines
-
Zhang, G.L., Bozic, I., Kwoh, C.K., August, J.T., Brusic, V.: Prediction of supertype-specific HLA class I binding peptides using support vector machines. Journal of Immunological Methods 320(1-2) (2007)
-
(2007)
Journal of Immunological Methods
, vol.320
, Issue.1-2
-
-
Zhang, G.L.1
Bozic, I.2
Kwoh, C.K.3
August, J.T.4
Brusic, V.5
-
19
-
-
33748792816
-
Prediction of MHC-binding peptides of flexible lengths from sequence-derived structural and physicochemical properties
-
Cui, J., Han, L.Y., Lin, H.H., Zhang, H.L., Tang, Z.Q.: Prediction of MHC-binding peptides of flexible lengths from sequence-derived structural and physicochemical properties. Molecular Immunology 44(5), 866-877 (2007)
-
(2007)
Molecular Immunology
, vol.44
, Issue.5
, pp. 866-877
-
-
Cui, J.1
Han, L.Y.2
Lin, H.H.3
Zhang, H.L.4
Tang, Z.Q.5
-
20
-
-
33747879440
-
Learning MHC I-peptide binding
-
Jojic, N., Reyes-Gomez, M., Heckerman, D., Kadie, C., Schueler-Furman, O.: Learning MHC I-peptide binding. Bioinformatics 22(14), e227-235 (2006)
-
(2006)
Bioinformatics
, vol.22
, Issue.14
-
-
Jojic, N.1
Reyes-Gomez, M.2
Heckerman, D.3
Kadie, C.4
Schueler-Furman, O.5
-
21
-
-
0036042580
-
Methods for prediction of peptide binding to MHC molecules: A comparative study
-
Yu, K., Petrovsky, N., Schonbach, C., Koh, J.Y., Brusic, V.: Methods for prediction of peptide binding to MHC molecules: a comparative study. Molecular Medicine 8(3), 137-148 (2002)
-
(2002)
Molecular Medicine
, vol.8
, Issue.3
, pp. 137-148
-
-
Yu, K.1
Petrovsky, N.2
Schonbach, C.3
Koh, J.Y.4
Brusic, V.5
-
22
-
-
34250196006
-
Strength in numbers: Achieving greater accuracy in MHC-I binding prediction by combining the results from multiple prediction tools
-
Trost, B., Bickis, M., Kusalik, A.: Strength in numbers: achieving greater accuracy in MHC-I binding prediction by combining the results from multiple prediction tools. Immunome Research 3, 5 (2007)
-
(2007)
Immunome Research
, vol.3
, pp. 5
-
-
Trost, B.1
Bickis, M.2
Kusalik, A.3
-
23
-
-
17844401477
-
Mapping and binding analysis of peptides derived from the tumorassociated antigen survivin for eight HLA alleles
-
Bachinsky, M.M., Guillen, D.E., Patel, S.R., Singleton, J., Chen, C., Soltis, D.A., Tussey, L.G.: Mapping and binding analysis of peptides derived from the tumorassociated antigen survivin for eight HLA alleles. Cancer Immunity 5, 1-9 (2005)
-
(2005)
Cancer Immunity
, vol.5
, pp. 1-9
-
-
Bachinsky, M.M.1
Guillen, D.E.2
Patel, S.R.3
Singleton, J.4
Chen, C.5
Soltis, D.A.6
Tussey, L.G.7
-
24
-
-
33746290181
-
Survivin-derived peptide epitopes and their role for induction of antitumor immunity in hematological malignancies
-
Friedrichs, B., Siegel, S., Andersen, M.H., Schmitz, N., Zeis, M.: Survivin-derived peptide epitopes and their role for induction of antitumor immunity in hematological malignancies. Leukemia & Lymphoma 47(6), 978-985 (2006)
-
(2006)
Leukemia & Lymphoma
, vol.47
, Issue.6
, pp. 978-985
-
-
Friedrichs, B.1
Siegel, S.2
Andersen, M.H.3
Schmitz, N.4
Zeis, M.5
-
25
-
-
0037407113
-
Reliable prediction of T-cell epitopes using neural networks with novel sequence representations
-
Nielsen, M., Lundegaard, C., Worning, P., Lauemøller, S.L., Lamberth, K., Buus, S., Brunak, S., Lund, O.: Reliable prediction of T-cell epitopes using neural networks with novel sequence representations. Protein Sci. 12(5), 1007-1017 (2003)
-
(2003)
Protein Sci
, vol.12
, Issue.5
, pp. 1007-1017
-
-
Nielsen, M.1
Lundegaard, C.2
Worning, P.3
Lauemøller, S.L.4
Lamberth, K.5
Buus, S.6
Brunak, S.7
Lund, O.8
-
26
-
-
33745593715
-
Complete remission of liver metastasis of pancreatic cancer under vaccination with a HLA-A2 restricted peptide derived from the universal tumor antigen survivin
-
Wobser, M., Keikavoussi, P., Kunzmann, V., Weininger, M., Andersen, M.H., Becker, J.C.: Complete remission of liver metastasis of pancreatic cancer under vaccination with a HLA-A2 restricted peptide derived from the universal tumor antigen survivin. Cancer Immunology and Immunotherapy 55(10), 1294-1298 (2006)
-
(2006)
Cancer Immunology and Immunotherapy
, vol.55
, Issue.10
, pp. 1294-1298
-
-
Wobser, M.1
Keikavoussi, P.2
Kunzmann, V.3
Weininger, M.4
Andersen, M.H.5
Becker, J.C.6
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