-
1
-
-
0036204582
-
Microbial diversity of a heavily polluted microbial mat and its community changes following degradation of petroleum compounds
-
DOI 10.1128/AEM.68.4.1674-1683.2002
-
Abed RMM, Safi NMD, Köster J, De Beer D, El-Nahhal Y, Rullkötter J Garcia-Pichel F (2002) Microbial diversity of a heavily polluted microbial mat and its community changes following degradation of petroleum compounds. Appl Environ Microb 68 : 1674 1683. (Pubitemid 34279974)
-
(2002)
Applied and Environmental Microbiology
, vol.68
, Issue.4
, pp. 1674-1683
-
-
Abed, R.M.M.1
Safi, N.M.D.2
Koster, J.3
De Beer, D.4
El-Nahhal, Y.5
Rullkotter, J.6
Garcia-Pichel, F.7
-
2
-
-
0032963409
-
Wide distribution and diversity of members of the bacterial kingdom Acidobacterium in the environment
-
Barns SM, Takala SL Kuske CR (1999) Wide distribution and diversity of members of the bacterial kingdom Acidobacterium in the environment. Appl Environ Microb 65 : 1731 1737. (Pubitemid 29173708)
-
(1999)
Applied and Environmental Microbiology
, vol.65
, Issue.4
, pp. 1731-1737
-
-
Barns, S.M.1
Takala, S.L.2
Kuske, C.R.3
-
3
-
-
34248225741
-
Acidobacteria phylum sequences in uranium-contaminated subsurface sediments greatly expand the known diversity within the phylum
-
DOI 10.1128/AEM.02012-06
-
Barns SM, Cain EC, Sommerville L Kuske CR (2007) Acidobacteria phylum sequences in uranium-contaminated subsurface sediments greatly expand the known diversity within the phylum. Appl Environ Microb 73 : 3113 3116. (Pubitemid 46718601)
-
(2007)
Applied and Environmental Microbiology
, vol.73
, Issue.9
, pp. 3113-3116
-
-
Barns, S.M.1
Cain, E.C.2
Sommerville, L.3
Kuske, C.R.4
-
4
-
-
0038009298
-
Diversity and dynamics of microbial communities in soils from agro-ecosystems
-
DOI 10.1046/j.1462-2920.2003.00404.x
-
Buckley DH Schmidt TM (2003) Diversity and dynamics of microbial communities in soils from agro-ecosystems. Environ Microbiol 5 : 441 452. (Pubitemid 36708188)
-
(2003)
Environmental Microbiology
, vol.5
, Issue.6
, pp. 441-452
-
-
Buckley, D.H.1
Schmidt, T.M.2
-
5
-
-
0036890139
-
Molecular characterization of bacterial diversity in Lodgepole pine (Pinus contorta) rhizosphere soils from British Columbia forest soils differing in disturbance and geographic source
-
DOI 10.1016/S0168-6496(02)00392-6, PII S0168649602003926
-
Chow ML, Radomski CC, McDermott JM, Davies J Axelrood PE (2002) Molecular characterization of bacterial diversity in Lodgepole pine (Pinus contorta) rhizosphere soils from British Columbia forest soils differing in disturbance and geographic sources. FEMS Microbiol Ecol 42 : 347 357. (Pubitemid 35346589)
-
(2002)
FEMS Microbiology Ecology
, vol.42
, Issue.3
, pp. 347-357
-
-
Chow, M.L.1
Radomski, C.C.2
McDermott, J.M.3
Davies, J.4
Axelrood, P.E.5
-
6
-
-
13544277388
-
Effects of growth medium, inoculum size, and incubation time on culturability and isolation of soil bacteria
-
DOI 10.1128/AEM.71.2.826-834.2005
-
Davis KER, Joseph SJ Janssen PH (2005) Effects of growth medium, inoculum size, and incubation time on culturability and isolation of soil bacteria. Appl Environ Microb 71 : 826 834. (Pubitemid 40223569)
-
(2005)
Applied and Environmental Microbiology
, vol.71
, Issue.2
, pp. 826-834
-
-
Davis, K.E.R.1
Joseph, S.J.2
Janssen, P.H.3
-
7
-
-
33745014137
-
Bacterial community structure of a pesticide-contaminated site and assessment of changes induced in community structure during bioremediation
-
DOI 10.1111/j.1574-6941.2006.00103.x
-
Debarati P, Pandey G, Meier C, van der Meer JR Jain RK (2006) Bacterial community structure of a pesticide-contaminated site and assessment of changes induced in community structure during bioremediation. FEMS Microbiol Ecol 57 : 116 127. (Pubitemid 43876444)
-
(2006)
FEMS Microbiology Ecology
, vol.57
, Issue.1
, pp. 116-127
-
-
Paul, D.1
Pandey, G.2
Meier, C.3
Roelof Van Der Meer, J.4
Jain, R.K.5
-
8
-
-
34247606048
-
Isolation and characterization of soil bacteria that define Terriglobus gen. nov., in the phylum Acidobacteria
-
DOI 10.1128/AEM.02140-06
-
Eichorst SA, Breznak JA Schmidt TM (2007) Isolation and characterization of soil bacteria that define Terriglobus gen. nov., in the phylum Acidobacteria. Appl Environ Microb 73 : 2708 2717. (Pubitemid 46668765)
-
(2007)
Applied and Environmental Microbiology
, vol.73
, Issue.8
, pp. 2708-2717
-
-
Eichorst, S.A.1
Breznak, J.A.2
Schmidt, T.M.3
-
9
-
-
0033025914
-
Effect of phenylurea herbicides on soil microbial communities estimated by analysis of 16S rRNA gene fingerprints and community-level physiological profiles
-
El Fantroussi S, Verschuere L, Verstraete W Top EM (1999) Effect of phenylurea herbicides on soil microbial communities estimated by analysis of 16S rRNA gene fingerprints and community-level physiological profiles. Appl Environ Microb 65 : 982 988.
-
(1999)
Appl Environ Microb
, vol.65
, pp. 982-988
-
-
El Fantroussi, S.1
Verschuere, L.2
Verstraete, W.3
Top, E.M.4
-
10
-
-
0037979242
-
Cultivation-dependent and -independent approaches for determining bacterial diversity in heavy-metal-contaminated soil
-
Ellis RJ, Morgan P, Weightman AJ Fry JC (2003) Cultivation-dependent and -independent approaches for determining bacterial diversity in heavy-metal-contaminated soil. Appl Environ Microb 69 : 3223 3230. (Pubitemid 36693325)
-
(2003)
Applied and Environmental Microbiology
, vol.69
, Issue.6
, pp. 3223-3230
-
-
Ellis, R.J.1
Morgan, P.2
Weightman, A.J.3
Fry, J.C.4
-
11
-
-
46249085253
-
Effect of 2,4,6-trinitrotoluene (TNT) on soil bacterial communities
-
George I, Eyers L, Stenuit B Agathos SN (2008) Effect of 2,4,6-trinitrotoluene (TNT) on soil bacterial communities. J Ind Microbiol Biotechnol 35 : 225 236.
-
(2008)
J Ind Microbiol Biotechnol
, vol.35
, pp. 225-236
-
-
George, I.1
Eyers, L.2
Stenuit, B.3
Agathos, S.N.4
-
12
-
-
14344260968
-
Bacterial diversity promotes community stability and functional resilience after perturbation
-
DOI 10.1111/j.1462-2920.2004.00695.x
-
Girvan MS, Campbell CD, Killham K, Prosser JI Glover LA (2005) Bacterial diversity promotes community stability and functional resilience after perturbation. Environ Microbiol 7 : 301 313. (Pubitemid 40290119)
-
(2005)
Environmental Microbiology
, vol.7
, Issue.3
, pp. 301-313
-
-
Girvan, M.S.1
Campbell, C.D.2
Killham, K.3
Prosser, J.I.4
Glover, L.A.5
-
13
-
-
0141676315
-
Comparative 16S rDNA and 16S rRNA sequence analysis indicates that Actinobacteria might be a dominant part of the metabolically active bacteria in heavy metal-contaminated bulk and rhizosphere soil
-
DOI 10.1046/j.1462-2920.2003.00484.x
-
Gremion F, Chatzinotas A Harms H (2003) Comparative 16S rDNA and 16S rRNA sequence analysis indicates that Actinobacteria might be a dominant part of the metabolically active bacteria in heavy metal-contaminated bulk and rhizosphere soil. Environ Microbiol 5 : 896 907. (Pubitemid 37181560)
-
(2003)
Environmental Microbiology
, vol.5
, Issue.10
, pp. 896-907
-
-
Gremion, F.1
Chatzinotas, A.2
Harms, H.3
-
14
-
-
0031662188
-
Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity
-
Hugenholtz P, Goebel BM Pace NR (1998) Mini-review: impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity. J Bacteriol 180 : 4765 4774. (Pubitemid 28429361)
-
(1998)
Journal of Bacteriology
, vol.180
, Issue.18
, pp. 4765-4774
-
-
Hugenholtz, P.1
Goebel, B.M.2
Pace, N.R.3
-
15
-
-
33644952722
-
Identifying the dominant soil bacterial taxa in libraries of 16S rRNA and 16S rRNA genes
-
Janssen PH (2006) Identifying the dominant soil bacterial taxa in libraries of 16S rRNA and 16S rRNA genes. Appl Environ Microb 72 : 1719 1728.
-
(2006)
Appl Environ Microb
, vol.72
, pp. 1719-1728
-
-
Janssen, P.H.1
-
16
-
-
0036250036
-
Improved culturability of soil bacteria and isolation in pure culture of novel members of the divisions Acidobacteria, Actinobacteria, Proteobacteria, and Verrucomicrobia
-
DOI 10.1128/AEM.68.5.2391-2396.2002
-
Janssen PH, Yates PS, Grinton BE, Taylor PM Sait M (2002) Improved culturability of soil bacteria and isolation in pure culture of novel members of the divisions Acidobacteria, Actinobacteria, Proteobacteria, and Verrucomicrobia. Appl Environ Microb 68 : 2391 2396. (Pubitemid 34477836)
-
(2002)
Applied and Environmental Microbiology
, vol.68
, Issue.5
, pp. 2391-2396
-
-
Janssen, P.H.1
Yates, P.S.2
Grinton, B.E.3
Taylor, P.M.4
Sait, M.5
-
17
-
-
2142687113
-
Laboratory Cultivation of Widespread and Previously Uncultured Soil Bacteria
-
DOI 10.1128/AEM.69.12.7210-7215.2003
-
Joseph SJ, Hugenholtz P, Sangwan P, Osborne CA Janssen PH (2003) Laboratory cultivation of widespread and previously uncultured soil bacteria. Appl Environ Microb 69 : 7210 7215. (Pubitemid 38585371)
-
(2003)
Applied and Environmental Microbiology
, vol.69
, Issue.12
, pp. 7210-7215
-
-
Joseph, S.J.1
Hugenholtz, P.2
Sangwan, P.3
Osborne, C.A.4
Janssen, P.H.5
-
18
-
-
0027460327
-
Monitoring the enrichment and isolation of sulfate-reducing bacteria by using oligonucleotide hybridization probes designed from environmentally derived 16S rRNA sequences
-
Kane MD, Poulsen LK Stahl DA (1993) Monitoring the enrichment and isolation of sulfate-reducing bacteria by using oligonucleotide hybridization probes designed from environmentally derived 16S rRNA sequences. Appl Environ Microb 59 : 682 686. (Pubitemid 23072341)
-
(1993)
Applied and Environmental Microbiology
, vol.59
, Issue.3
, pp. 682-686
-
-
Kane, M.D.1
Poulsen, L.K.2
Stahl, D.A.3
-
19
-
-
0001857117
-
16S/23S rRNA sequencing
-
Stackebrandt, E. Goodfellow, M. eds), pp. John Wiley & Sons. Chichester, UK
-
Lane DJ (1991) 16S/23S rRNA sequencing. Nucleic Acid Techniques in Bacterial Systematics (Stackebrandt E Goodfellow M, eds), pp. 115 175. John Wiley & Sons, Chichester, UK.
-
(1991)
Nucleic Acid Techniques in Bacterial Systematics
, pp. 115-175
-
-
Lane, D.J.1
-
20
-
-
0008048504
-
Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses
-
DOI 10.1073/pnas.82.20.6955
-
Lane DJ, Pace B, Olsen GJ, Stahl DA, Sogin ML Pace NR (1985) Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses. P Natl Acad Sci USA 82 : 6955 6959. (Pubitemid 16209672)
-
(1985)
Proceedings of the National Academy of Sciences of the United States of America
, vol.82
, Issue.20
, pp. 6955-6959
-
-
Lane, D.J.1
Pace, B.2
Olsen, G.J.3
-
21
-
-
2542523843
-
ARB: A software environment for sequence data
-
DOI 10.1093/nar/gkh293
-
Ludwig W, Strunk O, Westram R et al 2004) ARB: a software environment for sequence data. Nucleic Acids Res 32 : 1363 1371. (Pubitemid 38854737)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.4
, pp. 1363-1371
-
-
Ludwig, W.1
Strunk, O.2
Westram, R.3
Richter, L.4
Meier, H.5
Yadhukumar, A.6
Buchner, A.7
Lai, T.8
Steppi, S.9
Jacob, G.10
Forster, W.11
Brettske, I.12
Gerber, S.13
Ginhart, A.W.14
Gross, O.15
Grumann, S.16
Hermann, S.17
Jost, R.18
Konig, A.19
Liss, T.20
Lussbmann, R.21
May, M.22
Nonhoff, B.23
Reichel, B.24
Strehlow, R.25
Stamatakis, A.26
Stuckmann, N.27
Vilbig, A.28
Lenke, M.29
Ludwig, T.30
Bode, A.31
Schleifer, K.-H.32
more..
-
22
-
-
0027460328
-
Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
-
Muyzer G, De Waal EC Uitterlinden AG (1993) Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microb 59 : 695 700. (Pubitemid 23072343)
-
(1993)
Applied and Environmental Microbiology
, vol.59
, Issue.3
, pp. 695-700
-
-
Muyzer, G.1
De Waal, E.C.2
Uitterlinden, A.G.3
-
23
-
-
0033140436
-
Identification of the metabolically active members of a bacterial community in a polychlorinated biphenyl-polluted moorland soil
-
Nogales B, Moore ERB, Abraham WR Timmis KN (1999) Identification of the metabolically active members of a bacterial community in a polychlorinated biphenyl-polluted moorland soil. Environ Microbiol 1 : 199 212. (Pubitemid 129640042)
-
(1999)
Environmental Microbiology
, vol.1
, Issue.3
, pp. 199-212
-
-
Nogales, B.1
Moore, E.R.B.2
Abraham, W.-R.3
Timmis, K.N.4
-
24
-
-
17644436677
-
Soil bacterial community shift correlated with change from forest to pasture vegetation in a tropical soil
-
Nüsslein K Tiedje JM (1999) Soil bacterial community shift correlated with change from forest to pasture vegetation in a tropical soil. Appl Environ Microb 65 : 3622 3626. (Pubitemid 29398995)
-
(1999)
Applied and Environmental Microbiology
, vol.65
, Issue.8
, pp. 3622-3626
-
-
Nusslein, K.1
Tiedje, J.M.2
-
25
-
-
18744382447
-
Cultivation of globally distributed soil bacteria from phylogenetic lineages previously only detected in cultivation-independent surveys
-
DOI 10.1046/j.1462-2920.2002.00352.x
-
Sait M, Hugenholtz P Janssen PH (2002) Cultivation of globally distributed soil bacteria from phylogenetic lineages previously only detected in cultivation-independent surveys. Environ Microbiol 4 : 654 666. (Pubitemid 35442253)
-
(2002)
Environmental Microbiology
, vol.4
, Issue.11
, pp. 654-666
-
-
Sait, M.1
Hugenholtz, P.2
Janssen, P.H.3
-
26
-
-
33644962444
-
Effect of pH on isolation and distribution of members of subdivision 1 of the phylum Acidobacteria occurring in soil
-
Sait M, Davis KER Janssen PH (2006) Effect of pH on isolation and distribution of members of subdivision 1 of the phylum Acidobacteria occurring in soil. Appl Environ Microb 72 : 1852 1857.
-
(2006)
Appl Environ Microb
, vol.72
, pp. 1852-1857
-
-
Sait, M.1
Davis, K.E.R.2
Janssen, P.H.3
-
27
-
-
19544367285
-
Hydrocarbon contamination changes the bacterial diversity of soil from around Scott Base, Antarctica
-
DOI 10.1016/j.femsec.2004.11.007, PII S0168649604003381, Microbial Life in Cold Ecosystems
-
Saul DJ, Aislabie JM, Brown CE, Harris L Foght JM (2005) Hydrocarbon contamination changes the bacterial diversity of soil from around Scott Base, Antarctica. FEMS Microbiol Ecol 53 : 141 155. (Pubitemid 40733516)
-
(2005)
FEMS Microbiology Ecology
, vol.53
, Issue.1
, pp. 141-155
-
-
Saul, D.J.1
Aislabie, J.M.2
Brown, C.E.3
Harris, L.4
Foght, J.M.5
-
28
-
-
67649209698
-
-
Evaluation of the ecotoxicological threat of ammunition derived compounds to the habitat function of soil. PhD Thesis, FU, Berlin. Available at. (accessed 7 May 2009).
-
Schäfer RK (2002) Evaluation of the ecotoxicological threat of ammunition derived compounds to the habitat function of soil. PhD Thesis, FU, Berlin. Available at (accessed 7 May 2009).
-
(2002)
-
-
Schäfer, R.K.1
-
30
-
-
15444362001
-
Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness
-
DOI 10.1128/AEM.71.3.1501-1506.2005
-
Schloss PD Handelsman J (2005) Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl Environ Microb 71 : 1501 1506. (Pubitemid 40396689)
-
(2005)
Applied and Environmental Microbiology
, vol.71
, Issue.3
, pp. 1501-1506
-
-
Schloss, P.D.1
Handelsman, J.2
-
31
-
-
4644275463
-
Integration of microbial ecology and statistics: A test to compare gene libraries
-
DOI 10.1128/AEM.70.9.5485-5492.2004
-
Schloss PD, Larget BR Handelsman J (2004) Integration of microbial ecology and statistics: a test to compare gene libraries. Appl Environ Microb 70 : 5485 5492. (Pubitemid 39279626)
-
(2004)
Applied and Environmental Microbiology
, vol.70
, Issue.9
, pp. 5485-5492
-
-
Schloss, P.D.1
Larget, B.R.2
Handelsman, J.3
-
33
-
-
4143084055
-
New strategies for cultivation and detection of previously uncultured microbes
-
DOI 10.1128/AEM.70.8.4748-4755.2004
-
Stevenson BS, Eichorst SA, Wertz JT, Schmidt TM Breznak JA (2004) New strategies for cultivation and detection of previously uncultured microbes. Appl Environ Microb 70 : 4748 4755. (Pubitemid 39095501)
-
(2004)
Applied and Environmental Microbiology
, vol.70
, Issue.8
, pp. 4748-4755
-
-
Stevenson, B.S.1
Eichorst, S.A.2
Wertz, J.T.3
Schmidt, T.M.4
Breznak, J.A.5
-
34
-
-
8144229009
-
Bacterial community structure and diversity in a century-old manure-treated agroecosystem
-
DOI 10.1128/AEM.70.10.5868-5874.2004
-
Sun HY, Deng SP Raun WR (2004) Bacterial community structure and diversity in a century-old manure-treated agroecosystem. Appl Environ Microb 70 : 5868 5874. (Pubitemid 39471829)
-
(2004)
Applied and Environmental Microbiology
, vol.70
, Issue.10
, pp. 5868-5874
-
-
Sun, H.Y.1
Deng, S.P.2
Raun, W.R.3
-
35
-
-
0036136025
-
Spatial and resource factors influencing high microbial diversity in soil
-
DOI 10.1128/AEM.68.1.326-334.2002
-
Zhou J, Xia B, Treves DS, Wu LY, Marsh TL, O'Neill RV, Palumbo AV Tiedje JM (2002) Spatial and resource factors influencing high microbial diversity in soil. Appl Environ Microb 68 : 326 334. (Pubitemid 34031194)
-
(2002)
Applied and Environmental Microbiology
, vol.68
, Issue.1
, pp. 326-334
-
-
Zhou, J.1
Xia, B.2
Treves, D.S.3
Wu, L.-Y.4
Marsh, T.L.5
O'Neill, R.V.6
Palumbo, A.V.7
Tiedje, J.M.8
-
36
-
-
27144525864
-
Detection and phylogenetic relationships of highly diverse uncultured acidobacterial communities in Altamira Cave using 23S rRNA sequence analyses
-
DOI 10.1080/01490450500248986
-
Zimmermann J, Gonzales JM, Saiz-Jimenez C Ludwig W (2005) Detection and phylogenetic relationships of highly diverse uncultured Acidobacterial communities in Altamira Cave using 23S rRNA sequence analyses. Geomicrobiol J 22 : 379 388. (Pubitemid 41490096)
-
(2005)
Geomicrobiology Journal
, vol.22
, Issue.7-8
, pp. 379-388
-
-
Zimmermann, J.1
Gonzalez, J.M.2
Saiz-Jimenez, C.3
Ludwig, W.4
|