Changes In the bacterioplankton community of oligotrophic Lake Stechlin (northeastern Germany) after humic matter addition

Aquatic Microbial Ecology

Volumn 55, Issue 2, 2009, Pages 155-168

  Hutalle Schmelzer, Kristine Michelle L ^a,b   Grossart, Hans Peter ^a  

^a LEIBNIZ INSTITUTE OF FRESHWATER ECOLOGY AND INLAND FISHERIES   (Germany)

^b UNIVERSITY OF SANTO TOMAS   (Philippines)

Author keywords

Bacterioplankton community; Card fish; Dgge; Humic matter; Lake stechlin

Indexed keywords

ACTINOBACTERIA; ALPHAPROTEOBACTERIA; BACTERIA (MICROORGANISMS); BACTEROIDETES; BETAPROTEOBACTERIA; DELTAPROTEOBACTERIA; GAMMAPROTEOBACTERIA; LYSOBACTER; METHYLOBACTERIUM; PSEUDOMONAS; RHODOPILA; ROSEISALINUS; VARIOVORAX;

EID: 67649191956     PISSN: 09483055     EISSN: None     Source Type: Journal    
DOI: 10.3354/ame01288     Document Type: Article

References (47)

1. Allgaier M, Grossart HP (2006a) Diversity and seasonal dynamics of Actinobacteria populations in four lakes in northeastern Germany. Appl Environ Microbiol 72: 3489-3497
2. Allgaier M, Grossart HP (2006b) Seasonal dynamics and phylogenetic diversity of free-living and particle-associated bacterial communities in four lakes of northeastern Germany. Aquat Microb Ecol 45:115-128
3. Allgaier M, Brückner S, Jasper E, Grossart HP (2007) Intraand inter-lake variability of free-living and particle-associated Actinobacteria communities. Environ Microbiol 9: 2728-2741
4. Bowman JP, Nichols CM, Gibson JAE (2003) Algoriphagus ratkowskyi gen. nov., sp. nov., Brumimicrobium glaciale gen. nov., sp. nov., Cryomorpha ignava gen. nov., sp. nov., and Crocinitomix catalasitica gen. nov., sp. nov., novel flavobacteria isolated from various polar habitats. Int J Syst Evol Microbiol 53:1343-1355
5. Brenner DJ, Krieg NR, Staley JT (2005) Bergey's manual of systematic bacteriology, Vol 2, Part B and C. Springer Science and Business Media, New York
6. Burkert U, Warnecke F, Babenzien D, Zwirnmann E, Pernthaler J (2003) Members of readily enriched β-proteobacterial clade are common in surface waters of a humic lake. Appl Environ Microbiol 69:6550-6559
7. Casper SJ (ed) (1985) Lake Stechlin: a temperate oligotrophic lake. Dr. W. Junk B. V. Publishers, Dordrecht
8. Castle D, Kirchman D (2004) Composition of estuarine bacterial communities assessed by denaturing gradient gel electrophoresis and fluorescence in situ hybridization. Limnol Oceanogr Methods 2:303-314
9. Crump BC, Armbrust EV, Baross JA (1999) Phylogenetic analysis of particle-attached and free-living bacterial communities in the Columbia River, its estuary, and the adjacent coastal ocean. Appl Environ Microbiol 65:3192-3204
10. Crump BC, Kling GW, Bahr M, Hobbie JE (2003) Bacterioplankton community shifts in an Arctic lake correlate with seasonal changes in organic matter source. Appl Environ Microbiol 69:2253-2268
11. Daims H, Bruhl A, Amann R, Schleifer KH, Wagner M (1999) The domain-specific probe EUB338 is insufficient for the detection of all bacteria: development and evaluation of a more comprehensive probe set. Syst Appl Microbiol 22:434-444
12. Gich F, Schubert K, Bruns A, Hoffelner H, Overmann J (2005) Specific detection, isolation and characterization of selected, previously uncultured members of the freshwater bacterioplankton community. Appl Environ Microbiol 71:5908-5919
13. Glöckner FO, Fuchs BM, Amann R (1999) Bacterioplankton compositions of lakes and oceans: a first comparison based on fluorescence in situ hybridization. Appl Environ Microbiol 65:3721-3726
14. Glöckner FO, Zaichikov E, Belkova N, Denissova L, Pernthaler J, Pernthaler A, Amann R (2000) Comparative 16S rRNA analysis of lake bacterioplankton reveals globally distributed phylogenetic clusters including an abundant group of Actinobacteria. Appl Environ Microbiol 66: 5053-5065
15. Grossart HP, Jezbera J, Hornak K, Hutalle KML, Buck U, Simek K (2008) Abundance and in situ activities of major bacterial groups in Lake Grosse Fuchskuhle (northeastern Germany). Environ Microbiol 10:635-652
16. Hahn MW (2003) Isolation of strains belonging to the cosmopolitan Polynucleobacter necessarius cluster from freshwater habitats located in three climatic zones. Appl Environ Microbiol 69:5248-5254
17. Hahn MW, Lünsdorf H, Wu Q, Schauer M, Höfe MG, Boenigk J, Stadler P (2003) Isolation of novel ultramicrobacteria classified as Actinobacteria from five freshwater habitats in Europe and Asia. Appl Environ Microbiol 69:1442-1451
18. Hahn MW, Stadler P, Wu QL, Pöckl M (2004) The filtrationacclimatization method for isolation of an important fraction of the not readily cultivable bacteria. J Microbiol Methods 57:379-390
19. Hahn MW, Lang E, Brandt U, Wu QL, Scheuerl T (in press) Emended description of the genus Polynucleobacter and the species P. necessarius and proposal of the two subspecies P. necessarius subsp. necessarius subsp. nov. and P. necessarius subsp. asymbioticus subsp. nov. Int J Syst Evol Microbiol
20. Haukka K, Heikkinen E, Kairesalo T, Karjalamin H, Sivonen K (2005) Effect of humic material on the bacterioplankton community composition in boreal lakes and mesocosms. Environ Microbiol 7:620-630
21. Höfle MG, Haas H, Dominik K (1999) Seasonal dynamics of bacterioplankton community structure in a eutrophic lake as determined by 5S rRNA analysis. Appl Environ Microbiol 65:3164-3174
22. Jung DO, Achenbach LA, Karr EA, Takaichi S, Madigan MT (2004) A gas vesiculate planktonic strain of the purple non-sulfur bacterium Rhodoferax antarcticus isolated from Lake Fryxell, Dry Valleys, Antarctica. Arch Microbiol 182:236-243
23. Kirchman DL, Dittel AI, Findlay SEG, Fischer D (2004) Changes in bacterial activity and community structure in response to dissolved organic matter in the Hudson River, New York. Aquat Microb Ecol 35:243-257
24. Labrenz M, Lawson PA, Tindall BJ, Collins MD, Hirsch P (2005) Roseisalinus antarcticus gen. nov., sp. nov., a novel aerobic bacteriochlorophyll a-producing α-proteobacterium isolated from hypersaline Ekho Lake, Antarctica. Int J Syst Evol Microbiol 55:41-47
25. Langenheder S, Lindström ES, Tranvik LJ (2005) Weak coupling between community composition and functioning of aquatic bacteria. Limnol Oceanogr 50:957-967
26. Langenheder S, Lindström ES, Tranvik LJ (2006) Structure and function of bacterial communities emerging from different sources under identical conditions. Appl Environ Microbiol 72:212-220
27. Lindner AS, Pacheco A, Aldrich HC, Staniec AC, Uz I, Hodson DJ (2007) Methylocystis hirsuta sp. nov., a novel methanotroph isolated from a groundwater aquifer. Int J Syst Evol Microbiol 57:1891-1900
28. Lindström ES (2000) Bacterioplankton community composition in five lakes differing in trophic status and humic content. Microb Ecol 40:104-113
29. Loy A, Beisker W, Meier H (2005) Diversity of bacteria growing in natural mineral water after bottling. Appl Environ Microbiol 71:3624-3632
30. Manz W, Amann R, Ludwig W, Wagner M, Schleifer KH (1992) Phylogenetic oligodeoxynucleotide probes for the major subclasses of proteobacteria: problems and solutions. Syst Appl Microbiol 15:593-600
31. Meijer WG, Nienhuis-Kuiper ME, Hansen TA (1999) Fermentative bacteria from estuarine mud: phylogenetic position of Acidaminobacter hydrogenoformans and description of a new type of gram-negative, propionigenic bacterium as Propionibacter pelophilus gen. nov., sp. nov. Int J Syst Bacteriol 49:1039-1044
32. Méthe BA, Hiorns WD, Zehr JP (1998) Contrasts between marine and freshwater bacterial community composition: analysis of communities in Lake George and six other Adirondack lakes. Limnol Oceanogr 43:368-374
33. Moosvi SA, McDonald IR, Pearce DA, Kelly DP, Wood AP (2005) Molecular detection and isolation from Antarctica of methylotrophic bacteria able to grow with methylated sulfur compounds. Syst Appl Microbiol 28:541-554
34. Muyzer G, de Waal E, Uitterlinden A (1993) Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reactionamplified genes coding for 16S rRNA. Appl Environ Microbiol 59:695-700
35. Newton RJ, Kent AD, Triplett EW, McMahon KD (2006) Microbial community dynamics in a humic lake: differential persistence of common freshwater phylotypes. Environ Microbiol 8:956-970
36. Pearce DA, van der Gast CJ, Woodward K, Newsham KK (2005) Significant changes in the bacterioplankton community structure of a maritime Antarctic freshwater lake following nutrient enrichment. Microbiology 151: 3237-3248
37. Perez MT, Sommaruga R (2006) Differential effect of algaland soil-derived dissolved organic matter on alpine lake bacterial community composition and activity. Limnol Oceanogr 51:2527-2537
38. Pernthaler J, Amann R (2005) Fate of heterotrophic microbes in pelagic habitats: focus on populations. Microbiol Mol Biol Rev 69:440-461
39. Roller C, Wagner M, Amann R, Ludwig W, Schleifer K (1994) In situ probing of gram-positive bacteria with high DNA G + C content using 23S rRNA-targeted oligonucleotides. Microbiology 140:2849-2858
40. Sachse A, Babenzien D, Ginzel G, Albrecht J, Steinberg CEW (2001) Characterization of dissolved organic carbon (DOC) in a dystrophic lake and an adjacent fen. Biogeochemistry 54:279-296
41. Sekar R, Pernthaler A, Pernthaler J, Warnecke F, Posch T, Amann R (2003) An improved protocol for quantification of freshwater Actinobacteria by fluorescence in situ hybridization. Appl Environ Microbiol 69:2928-2935
42. Urbach EK, Vergin L, Young L, Morse A, Larson GL, Giovanni SJ (2001) Unusual bacterioplankton community structure in ultraoligotrophic Crater Lake. Limnol Oceanogr 46: 557-572
43. Warnecke F, Amann R, Pernthaler J (2004) Actinobacterial 16S rRNA genes from freshwater bacteria affiliated with class Actinobacteria. Environ Microbiol 6:242-253
44. Warnecke F, Sommaruga R, Sekar R, Hofer J, Pernthaler J (2005) Abundances, identity and growth of Actinobacteria in mountain lakes of different UV transparency. Appl Environ Microbiol 71:5551-5559
45. Wu QL, Hahn MW (2006) Differences in structure and dynamics of Polynucleobacter communities in a temperate and a subtropical lake, revealed at three phylogenetic levels. FEMS Microbiol Ecol 57:67-79
46. Xiao X, Yin X, Lin J, Sun L, You Z, Wang P, Wang F (2005) Chitinase genes in lake sediments of Ardley Island, Antarctica. Appl Environ Microbiol 71:7904-7909
47. Zwart G, Crump BC, Kamst-van Agterveld MP, Hagen F, Han SK (2002) Typical freshwater bacteria: an analysis of available 16S rRNA gene sequences from plankton of lakes and rivers. Aquat Microb Ecol 28:141-155