A transcript profiling approach reveals the zinc finger transcription factor ZNF191 is a pleiotropic factor

BMC Genomics

Volumn 10, Issue , 2009, Pages

  Li, Jianzhong ^a   Chen, Xia ^b   Gong, Xuelian ^a   Liu, Ying ^a   Feng, Hao ^a   Qiu, Lei ^a   Hu, Zhenlin ^a   Zhang, Junping ^a  

^a SECOND MILITARY MEDICAL UNIVERSITY   (China)

^b INSTITUTE OF GEOLOGY AND GEOPHYSICS   (China)

Author keywords

[No Author keywords available]

Indexed keywords

ATM PROTEIN; COMPLEMENT COMPONENT C5; CYCLIN A1; DUAL SPECIFICITY PHOSPHATASE 6; ENDOTHELIN 1; GROWTH ARREST AND DNA DAMAGE INDUCIBLE PROTEIN 45; INTERLEUKIN 17F; MITOGEN ACTIVATED PROTEIN KINASE KINASE 5; NEU DIFFERENTIATION FACTOR; NEU DIFFERENTIATION FACTOR 1; NEUROPILIN 2; NOTCH3 RECEPTOR; PLEXIN; PROTEIN KINASE C ALPHA INHIBITOR; PROTEIN MUTL; PROTEIN SWI; RETINOBLASTOMA PROTEIN; RGS4 PROTEIN; SPROUTY PROTEIN; SPROUTY PROTEIN 4; STEM CELL FACTOR; STROMAL CELL DERIVED FACTOR 1; THROMBOSPONDIN 1; TRANSCRIPTION FACTOR SNF; TUMOR NECROSIS FACTOR RECEPTOR ASSOCIATED FACTOR 6; UBIQUITIN PROTEIN LIGASE NEDD4; UNCLASSIFIED DRUG; VASCULOTROPIN; ZINC FINGER PROTEIN; ZINC FINGER PROTEIN 191; KRUPPEL LIKE FACTOR; ZNF24 PROTEIN, HUMAN;

ANGIOGENESIS; ARTICLE; BRAIN DEVELOPMENT; CONTROLLED STUDY; DNA DAMAGE; EMBRYO; ENZYME REGULATION; GENE EXPRESSION PROFILING; GENE IDENTIFICATION; GENE OVEREXPRESSION; GENE SILENCING; GENE TARGETING; GENETIC TRANSCRIPTION; HEMATOPOIESIS; HUMAN; HUMAN CELL; KNOCKOUT GENE; MICROARRAY ANALYSIS; NUCLEOTIDE SEQUENCE; PLEIOTROPY; PROTEIN EXPRESSION; PROTEIN FUNCTION; REAL TIME POLYMERASE CHAIN REACTION; TUMOR GROWTH; CELL LINE; COMPUTER PROGRAM; DNA MICROARRAY; GENE EXPRESSION REGULATION; GENETICS; NEOPLASM;

CELL LINE; DNA DAMAGE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENE KNOCKDOWN TECHNIQUES; GENE SILENCING; HEMATOPOIESIS; HUMANS; KRUPPEL-LIKE TRANSCRIPTION FACTORS; NEOPLASMS; NEOVASCULARIZATION, PHYSIOLOGIC; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; SOFTWARE; ZINC FINGERS;

EID: 67649119545     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-10-241     Document Type: Article

References (48)

1. Ghaleb AM Nandan MO Chanchevalap S Dalton WB Hisamuddin IM Yang VW Kruppel-like factors 4 and 5: The yin and yang regulators of cellular proliferation Cell Res 2005, 15(2):92-96 1317089 15740636 10.1038/ sj.cr.7290271
2. Venter JC Adams MD Myers EW Li PW Mural RJ Sutton GG Smith HO Yandell M Evans CA Holt RA et al The sequence of the human genome Science 2001, 291(5507):1304-1351 10.1126/science.1058040 11181995
3. Lander ES Linton LM Birren B Nusbaum C Zody MC Baldwin J Devon K Dewar K Doyle M FitzHugh W Initial sequencing and analysis of the human genome Nature 2001, 409(6822):860-921 10.1038/35057062 11237011
4. Tupler R Perini G Green MR Expressing the human genome Nature 2001, 409(6822):832-833 10.1038/35057011 11237001
5. Schuh R Aicher W Gaul U Cote S Preiss A Maier D Seifert E Nauber U Schroder C Kemler R A conserved family of nuclear proteins containing structural elements of the finger protein encoded by Kruppel, a Drosophila segmentation gene Cell 1986, 47(6):1025-1032 10.1016/ 0092-8674(86)90817-2 3096579
6. Klug A Schwabe JW Protein motifs 5. Zinc fingers Faseb J 1995, 9(8):597-604 7768350
7. Dang DT Pevsner J Yang VW The biology of the mammalian Kruppel-like family of transcription factors Int J Biochem Cell Biol 2000, 32(11-12):1103-1121 10.1016/S1357-2725(00)00059-5 11137451
8. Bieker JJ Kruppel-like factors: Three fingers in many pies J Biol Chem 2001, 276(37):34355-34358 10.1074/jbc.R100043200 11443140
9. Kaczynski J Cook T Urrutia R Sp1- and Kruppel-like transcription factors Genome Biol 2003, 4(2):206 151296 12620113 10.1186/gb-2003-4-2-206
10. Rousseau-Merck MF Huebner K Berger R Thiesen HJ Chromosomal localization of two human zinc finger protein genes, ZNF24 (KOX17) and ZNF29 (KOX26), to 18q12 and 17p13-p12, respectively Genomics 1991, 9(1):154-161 10.1016/ 0888-7543(91)90233-5 2004757
11. Williams AJ Khachigian LM Shows T Collins T Isolation and characterization of a novel zinc-finger protein with transcription repressor activity J Biol Chem 1995, 270(38):22143-22152 10.1074/ jbc.270.38.22143 7673192
12. Pengue G Calabro V Bartoli PC Pagliuca A Lania L Repression of transcriptional activity at a distance by the evolutionarily conserved KRAB domain present in a subfamily of zinc finger proteins Nucleic Acids Res 1994, 22(15):2908-2914 310254 8065901 10.1093/nar/22.15.2908
13. Bellefroid EJ Poncelet DA Lecocq PJ Revelant O Martial JA The evolutionarily conserved Kruppel-associated box domain defines a subfamily of eukaryotic multifingered proteins Proc Natl Acad Sci USA 1991, 88(9):3608-3612 51501 2023909 10.1073/pnas.88.9.3608
14. Bardwell VJ Treisman R The POZ domain: A conserved protein-protein interaction motif Genes Dev 1994, 8(14):1664-1677 10.1101/gad.8.14.1664 7958847
15. Sander TL Stringer KF Maki JL Szauter P Stone JR Collins T The SCAN domain defines a large family of zinc finger transcription factors Gene 2003, 310:29-38 10.1016/S0378-1119(03)00509-2 12801630
16. Edelstein LC Collins T The SCAN domain family of zinc finger transcription factors Gene 2005, 359:1-17 10.1016/j.gene.2005.06.022 16139965
17. Deuschle U Meyer WK Thiesen HJ Tetracycline-reversible silencing of eukaryotic promoters Mol Cell Biol 1995, 15(4):1907-1914 230416 7891684
18. Schultz DC Ayyanathan K Negorev D Maul GG Rauscher FJ 3rd SETDB1: A novel KAP-1-associated histone H3, lysine 9-specific methyltransferase that contributes to HP1-mediated silencing of euchromatic genes by KRAB zinc-finger proteins Genes Dev 2002, 16(8):919-932 152359 11959841 10.1101/gad.973302
19. Stone JR Maki JL Blacklow SC Collins T The SCAN domain of ZNF174 is a dimer J Biol Chem 2002, 277(7):5448-5452 1201017 11741982 10.1074/ jbc.M109815200
20. Schumacher C Wang H Honer C Ding W Koehn J Lawrence Q Coulis CM Wang LL Ballinger D Bowen BR The SCAN domain mediates selective oligomerization J Biol Chem 2000, 275(22):17173-17179 10.1074/jbc.M000119200 10747874
21. Sander TL Haas AL Peterson MJ Morris JF Identification of a novel SCAN box-related protein that interacts with MZF1B. The leucine-rich SCAN box mediates hetero- and homoprotein associations J Biol Chem 2000, 275(17):12857-12867 10.1074/jbc.275.17.12857 10777584
22. Williams AJ Blacklow SC Collins T The zinc finger-associated SCAN box is a conserved oligomerization domain Mol Cell Biol 1999, 19(12):8526-8535 84969 10567577
23. Gentry JJ Rutkoski NJ Burke TL Carter BD A functional interaction between the p75 neurotrophin receptor interacting factors, TRAF6 and NRIF J Biol Chem 2004, 279(16):16646-16656 10.1074/jbc.M309209200 14960584
24. Adachi H Tsujimoto M Characterization of the human gene encoding the scavenger receptor expressed by endothelial cell and its regulation by a novel transcription factor, endothelial zinc finger protein-2 J Biol Chem 2002, 277(27):24014-24021 10.1074/jbc.M201854200 11978792
25. Casademunt E Carter BD Benzel I Frade JM Dechant G Barde YA The zinc finger protein NRIF interacts with the neurotrophin receptor p75(NTR) and participates in programmed cell death Embo J 1999, 18(21):6050-6061 1171670 10545116 10.1093/emboj/18.21.6050
26. Han ZG Zhang QH Ye M Kan LX Gu BW He KL Shi SL Zhou J Fu G Mao M Molecular cloning of six novel Kruppel-like zinc finger genes from hematopoietic cells and identification of a novel transregulatory domain KRNB J Biol Chem 1999, 274(50):35741-35748 10.1074/jbc.274.50.35741 10585455
27. Albanese V Biguet NF Kiefer H Bayard E Mallet J Meloni R Quantitative effects on gene silencing by allelic variation at a tetranucleotide microsatellite Hum Mol Genet 2001, 10(17):1785-1792 10.1093/hmg/ 10.17.1785 11532988
28. Prost JF Negre D Cornet-Javaux F Cortay JC Cozzone AJ Herbage D Mallein-Gerin F Isolation, cloning, and expression of a new murine zinc finger encoding gene Biochim Biophys Acta 1999, 1447(2-3):278-283 10542327
29. Meloni R Albanese V Ravassard P Treilhou F Mallet J A tetranucleotide polymorphic microsatellite, located in the first intron of the tyrosine hydroxylase gene, acts as a transcription regulatory element in vitro Hum Mol Genet 1998, 7(3):423-428 10.1093/hmg/7.3.423 9466999
30. Kern SE Fearon ER Tersmette KW Enterline JP Leppert M Nakamura Y White R Vogelstein B Hamilton SR Clinical and pathological associations with allelic loss in colorectal carcinoma [corrected] Jama 1989, 261(21):3099-3103 10.1001/jama.261.21.3099 2654431
31. Vogelstein B Fearon ER Hamilton SR Kern SE Preisinger AC Leppert M Nakamura Y White R Smits AM Bos JL Genetic alterations during colorectal-tumor development N Engl J Med 1988, 319(9):525-532 2841597
32. Li J Chen X Yang H Wang S Guo B Yu L Wang Z Fu J The zinc finger transcription factor 191 is required for early embryonic development and cell proliferation Exp Cell Res 2006, 312(20):3990-3998 10.1016/ j.yexcr.2006.08.020 17064688
33. Doniger SW Salomonis N Dahlquist KD Vranizan K Lawlor SC Conklin BR MAPPFinder: Using Gene Ontology and GenMAPP to create a global gene-expression profile from microarray data Genome Biol 2003, 4(1):R7 151291 12540299 10.1186/gb-2003-4-1-r7
34. Abdollahi A Lord KA Hoffman-Liebermann B Liebermann DA Sequence and expression of a cDNA encoding MyD118: A novel myeloid differentiation primary response gene induced by multiple cytokines Oncogene 1991, 6(1):165-167 1899477
35. Wehrle-Haller B The role of Kit-ligand in melanocyte development and epidermal homeostasis Pigment Cell Res 2003, 16(3):287-296 10.1034/ j.1600-0749.2003.00055.x 12753403
36. Harper J Yan L Loureiro RM Wu I Fang J D'Amore PA Moses MA Repression of vascular endothelial growth factor expression by the zinc finger transcription factor ZNF24 Cancer Res 2007, 67(18):8736-8741 10.1158/ 0008-5472.CAN-07-1617 17875714
37. Kazerounian S Yee KO Lawler J Thrombospondins in cancer Cell Mol Life Sci 2008, 65(5):700-712 10.1007/s00018-007-7486-z 18193162
38. Langenfeld EM Bojnowski J Perone J Langenfeld J Expression of bone morphogenetic proteins in human lung carcinomas Ann Thorac Surg 2005, 80(3):1028-1032 10.1016/j.athoracsur.2005.03.094 16122479
39. Langenfeld EM Langenfeld J Bone morphogenetic protein-2 stimulates angiogenesis in developing tumors Mol Cancer Res 2004, 2(3):141-149 15037653
40. Wehler TC Frerichs K Graf C Drescher D Schimanski K Biesterfeld S Berger MR Kanzler S Junginger T Galle PR PDGFRalpha/beta expression correlates with the metastatic behavior of human colorectal cancer: A possible rationale for a molecular targeting strategy Oncol Rep 2008, 19(3):697-704 18288404
41. Dunn TA Chen S Faith DA Hicks JL Platz EA Chen Y Ewing CM Sauvageot J Isaacs WB De Marzo AM A novel role of myosin VI in human prostate cancer Am J Pathol 2006, 169(5):1843-1854 1780223 17071605 10.2353/ ajpath.2006.060316
42. Semizarov D Kroeger P Fesik S siRNA-mediated gene silencing: A global genome view Nucleic Acids Res 2004, 32(13):3836-3845 506802 15272085 10.1093/nar/gkh714
43. Khalfallah O Faucon-Biguet N Nardelli J Meloni R Mallet J Expression of the transcription factor Zfp191 during embryonic development in the mouse Gene Expr Patterns 2008, 8(3):148-154 10.1016/j.gep.2007.11.002 18096443
44. Lutsenko S Gupta A Burkhead JL Zuzel V Cellular multitasking: The dual role of human Cu-ATPases in cofactor delivery and intracellular copper balance Arch Biochem Biophys 2008, 476(1):22-32 10.1016/ j.abb.2008.05.005 18534184
45. Macreadie IG Copper transport and Alzheimer's disease Eur Biophys J 2008, 37(3):295-300 10.1007/s00249-007-0235-2 18004558
46. Kong GK Miles LA Crespi GA Morton CJ Ng HL Barnham KJ McKinstry WJ Cappai R Parker MW Copper binding to the Alzheimer's disease amyloid precursor protein Eur Biophys J 2008, 37(3):269-279 10.1007/ s00249-007-0234-3 18030462
47. Scharff C Haesler S An evolutionary perspective on FoxP2: Strictly for the birds? Curr Opin Neurobiol 2005, 15(6):694-703 10.1016/ j.conb.2005.10.004 16266802
48. Livak KJ Schmittgen TD Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method Methods 2001, 25(4):402-408 10.1006/meth.2001.1262 11846609