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Volumn 2, Issue 4, 2009, Pages

Mining frequent cross-graph quasi-cliques

Author keywords

Bioinformatics; Clique; Graph mining; Joint mining

Indexed keywords

BIOLOGICAL PROCESS; CLIQUE; CUSTOMER SEGMENTATION; DATA MINING METHODS; DATA MINING PROBLEMS; DATA SETS; EXPRESSION PATTERNS; GENE EXPRESSION DATA; GENERAL MODEL; GRAPH MINING; JOINT MINING; MULTIPLE GENES; PERFORMANCE STUDY; PRACTICAL ALGORITHMS; PROTEIN-PROTEIN INTERACTIONS; SINGLE SOURCE; SOCIAL NETWORK ANALYSIS; SYNTHETIC AND REAL DATA; WEB MINING;

EID: 67549083110     PISSN: 15564681     EISSN: 1556472X     Source Type: Journal    
DOI: 10.1145/1460797.1460799     Document Type: Article
Times cited : (85)

References (56)
  • 2
    • 0033536012 scopus 로고    scopus 로고
    • Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide array
    • ALON, U., BARKAI, N., NOTTERMAN, D., GISH, K., YBARRA, S., MACK, D., AND LEVINE, A. 1999. Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide array. Proc. Natl. Acad. Sci. 96, 12, 6745-6750.
    • (1999) Proc. Natl. Acad. Sci , vol.96 , Issue.12 , pp. 6745-6750
    • ALON, U.1    BARKAI, N.2    NOTTERMAN, D.3    GISH, K.4    YBARRA, S.5    MACK, D.6    LEVINE, A.7
  • 3
    • 2942552459 scopus 로고    scopus 로고
    • An automated method for finding molecular complexes in large protein interaction networks
    • BADER, G. AND HOGUE, C. 2003. An automated method for finding molecular complexes in large protein interaction networks. BMC Bioinformatics 4, 1, 2.
    • (2003) BMC Bioinformatics , vol.4 , Issue.1 , pp. 2
    • BADER, G.1    HOGUE, C.2
  • 4
    • 0038483826 scopus 로고    scopus 로고
    • BARABÁSI, A. AND ALBERT, R. 1999. Emergence of scaling in random networks. Science 286.
    • BARABÁSI, A. AND ALBERT, R. 1999. Emergence of scaling in random networks. Science 286.
  • 6
    • 0034518156 scopus 로고    scopus 로고
    • Processing and quality control of DNA array hybridization data
    • BEISSBARTH, T., FELLENBERG, K., BRORS, B., ET AL. 2000. Processing and quality control of DNA array hybridization data. Bioinformatics 16, 1014-1022.
    • (2000) Bioinformatics , vol.16 , pp. 1014-1022
    • BEISSBARTH, T.1    FELLENBERG, K.2    BRORS, B.3    ET AL.4
  • 7
    • 0032728081 scopus 로고    scopus 로고
    • Clustering gene expression patterns
    • BEN-DOR, A., SHAMIR, R., AND YAKHINI, Z. 1999. Clustering gene expression patterns. J. Computati. Biol. 6, 3/4, 281-297.
    • (1999) J. Computati. Biol , vol.6 , Issue.3-4 , pp. 281-297
    • BEN-DOR, A.1    SHAMIR, R.2    YAKHINI, Z.3
  • 9
    • 0038074373 scopus 로고    scopus 로고
    • Topological structure analysis of the protein-protein interaction network in budding yeast
    • BU, D., ZHAO, Y., CAI, L., ET AL. 2003. Topological structure analysis of the protein-protein interaction network in budding yeast. Nucl. Acids Research. 31, 9, 2443-2450.
    • (2003) Nucl. Acids Research , vol.31 , Issue.9 , pp. 2443-2450
    • BU, D.1    ZHAO, Y.2    CAI, L.3    ET AL.4
  • 10
    • 0032112293 scopus 로고    scopus 로고
    • A genome-wide transcriptional analysis of the mitotic cell cycle
    • CHO, R., CAMPBELL, M., WINZELER, E., ET AL. 1998. A genome-wide transcriptional analysis of the mitotic cell cycle. Mole. Cell 2, 1, 65-73.
    • (1998) Mole. Cell , vol.2 , Issue.1 , pp. 65-73
    • CHO, R.1    CAMPBELL, M.2    WINZELER, E.3    ET AL.4
  • 11
    • 0027983908 scopus 로고    scopus 로고
    • CHOI, K., SATTERBERG, B., LYONS, D., AND ELION, E. 1994. Ste5 tethers multiple protein kinases in the map kinase cascade required for mating in S. cerevisiae. Cell 78, 499-C512.
    • CHOI, K., SATTERBERG, B., LYONS, D., AND ELION, E. 1994. Ste5 tethers multiple protein kinases in the map kinase cascade required for mating in S. cerevisiae. Cell 78, 499-C512.
  • 13
    • 0030669030 scopus 로고    scopus 로고
    • Exploring the metabolic and genetic control of gene expression on a genomic scale
    • DERISI, J., IYER, V., AND BROWN, P. 1997. Exploring the metabolic and genetic control of gene expression on a genomic scale. Science, 680-686.
    • (1997) Science , pp. 680-686
    • DERISI, J.1    IYER, V.2    BROWN, P.3
  • 16
    • 9444228794 scopus 로고    scopus 로고
    • On multi relational data mining (mrdm)
    • DZEROSKI, S. AND RAEDT, L. D. 2003. On multi relational data mining (mrdm). SIGKDD Explorations 5, 1.
    • (2003) SIGKDD Explorations , vol.5 , pp. 1
    • DZEROSKI, S.1    RAEDT, L.D.2
  • 17
    • 0032441150 scopus 로고    scopus 로고
    • Cluster analysis and display of genomewide expression patterns
    • EISEN, M., SPELLMAN, P., BROWN, P., AND BOTSTEIN, D. 1998. Cluster analysis and display of genomewide expression patterns. Proc. Natl. Acad. Sci. 95, 14863-14868.
    • (1998) Proc. Natl. Acad. Sci , vol.95 , pp. 14863-14868
    • EISEN, M.1    SPELLMAN, P.2    BROWN, P.3    BOTSTEIN, D.4
  • 18
    • 0036529479 scopus 로고    scopus 로고
    • An efficient algorithm for large-scale detection of protein families
    • ENRIGHT, A., DONGEN, S., AND OUZOUNIS, C. 2002. An efficient algorithm for large-scale detection of protein families. Nucl. Acids Resear. 30, 7, 1575-1584.
    • (2002) Nucl. Acids Resear , vol.30 , Issue.7 , pp. 1575-1584
    • ENRIGHT, A.1    DONGEN, S.2    OUZOUNIS, C.3
  • 21
    • 0035162698 scopus 로고    scopus 로고
    • Genomic expression responses to DNA-damaging agents and the regulatory role of the yeast ATR homolog Meclp
    • GASCH, A., HUANG, M., METZNER, S., BOTSTEIN, D., ELLEDGE, S., AND BROWN, P. 2001. Genomic expression responses to DNA-damaging agents and the regulatory role of the yeast ATR homolog Meclp. Mol. Biol. Cell 12, 10, 2987-3003.
    • (2001) Mol. Biol. Cell , vol.12 , Issue.10 , pp. 2987-3003
    • GASCH, A.1    HUANG, M.2    METZNER, S.3    BOTSTEIN, D.4    ELLEDGE, S.5    BROWN, P.6
  • 23
    • 0037050026 scopus 로고    scopus 로고
    • GAVIN, A., BOSCHE, M., KRAUSE, R., AND ET. AL. 2002. Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature 415, 6868, 123-124.
    • GAVIN, A., BOSCHE, M., KRAUSE, R., AND ET. AL. 2002. Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature 415, 6868, 123-124.
  • 24
    • 0034515528 scopus 로고    scopus 로고
    • A clustering algorithm based on graph connectivity
    • HARTUV, E. AND SHAMIR, R. 2000. A clustering algorithm based on graph connectivity. Inform. Process. Lett. 76, 4-6, 175-181.
    • (2000) Inform. Process. Lett , vol.76 , Issue.4-6 , pp. 175-181
    • HARTUV, E.1    SHAMIR, R.2
  • 25
    • 0037050004 scopus 로고    scopus 로고
    • Systematic identification of protein complexes in saccharomyces cerevisiae by mass spectrometry
    • HO, Y, GRUHLER, A., HEILBUT, A., ET AL. 2002. Systematic identification of protein complexes in saccharomyces cerevisiae by mass spectrometry Nature 415, 180-183.
    • (2002) Nature , vol.415 , pp. 180-183
    • HO, Y.1    GRUHLER, A.2    HEILBUT, A.3    ET AL.4
  • 28
    • 84888531210 scopus 로고    scopus 로고
    • Y Toward a protein-protein interaction map of the budding yeast: A comprehensive system to examine twohybrid interactions in all possible combinations between the yeast proteins
    • ITO, T, TASHIRO, K., MUTA, S., OZAWA, R., CHIBA, T, NISHIZAWA, M., YAMAMOTO, K., KUHARA, S., AND SAKAKI, Y Toward a protein-protein interaction map of the budding yeast: A comprehensive system to examine twohybrid interactions in all possible combinations between the yeast proteins. Proc. Natl. Acad. Sci.
    • Proc. Natl. Acad. Sci
    • ITO, T.1    TASHIRO, K.2    MUTA, S.3    OZAWA, R.4    CHIBA, T.5    NISHIZAWA, M.6    YAMAMOTO, K.7    KUHARA, S.8    SAKAKI9
  • 31
    • 3042514191 scopus 로고    scopus 로고
    • Coexpression analysis of human genes across many microarray data sets
    • LEE, H., HSU, A., SAJDAK, J., QIN, J., AND PAVLIDIS, P. 2004. Coexpression analysis of human genes across many microarray data sets. Genome Resear. 14, 1085-1094.
    • (2004) Genome Resear , vol.14 , pp. 1085-1094
    • LEE, H.1    HSU, A.2    SAJDAK, J.3    QIN, J.4    PAVLIDIS, P.5
  • 32
    • 0029892972 scopus 로고    scopus 로고
    • LYONS, D., MAHANTY, S., CHOI, K., MANANDHAR, M., AND ELION, E. 1996. The Sh3-domain protein Beml coordinates mitogen-activated protein kinase cascade activation with cell cycle control in Saccharomyces cerevisiae. Mol. Cell Biol. 16, 4095-C4106.
    • LYONS, D., MAHANTY, S., CHOI, K., MANANDHAR, M., AND ELION, E. 1996. The Sh3-domain protein Beml coordinates mitogen-activated protein kinase cascade activation with cell cycle control in Saccharomyces cerevisiae. Mol. Cell Biol. 16, 4095-C4106.
  • 33
    • 0000546425 scopus 로고    scopus 로고
    • Classifying molecular sequences using a linkage graph with their pairwise similarities
    • MATSUDA, M., ISHIHARA, T., AND HASHIMOTO, A. 1999. Classifying molecular sequences using a linkage graph with their pairwise similarities. Theor. Comput. Sci. 210, 2, 305-325.
    • (1999) Theor. Comput. Sci , vol.210 , Issue.2 , pp. 305-325
    • MATSUDA, M.1    ISHIHARA, T.2    HASHIMOTO, A.3
  • 34
    • 33644875537 scopus 로고    scopus 로고
    • MIPS: Analysis and annotation of proteins from whole genomes in 2005
    • MEWES, H., FRISHMAN, D., MAYER, K, ET AL. 2006. MIPS: Analysis and annotation of proteins from whole genomes in 2005. Nucl. Acids Resear. 34 (Supplement 1), D169-D172.
    • (2006) Nucl. Acids Resear , vol.34 , Issue.SUPPL.EMENT 1
    • MEWES, H.1    FRISHMAN, D.2    MAYER, K.3    ET AL.4
  • 35
    • 0141450348 scopus 로고    scopus 로고
    • Comparison and metaanalysis of microarray data: From the bench to the computer desk
    • MOREAU, Y., AERTS, S., MOOR, B., STROOPER, B., AND DABROWSKI, M. 2003. Comparison and metaanalysis of microarray data: From the bench to the computer desk. TRENDS Genetics 19, 570-577.
    • (2003) TRENDS Genetics , vol.19 , pp. 570-577
    • MOREAU, Y.1    AERTS, S.2    MOOR, B.3    STROOPER, B.4    DABROWSKI, M.5
  • 37
    • 24044445009 scopus 로고    scopus 로고
    • Biological applications of multi-relational data mining
    • PAGE, D. AND CRAVEN, M. 2003. Biological applications of multi-relational data mining. SIGKDD Explor. 5, 1, 69-79.
    • (2003) SIGKDD Explor , vol.5 , Issue.1 , pp. 69-79
    • PAGE, D.1    CRAVEN, M.2
  • 41
    • 0842309161 scopus 로고    scopus 로고
    • Discovering molecular pathways from protein interaction and gene expression data
    • SEGAL, E., WANG, H., AND KOLLEE, D. 2003. Discovering molecular pathways from protein interaction and gene expression data. Bioinformatics 19, i264-i272.
    • (2003) Bioinformatics , vol.19
    • SEGAL, E.1    WANG, H.2    KOLLEE, D.3
  • 44
    • 0141993704 scopus 로고    scopus 로고
    • A gene-coexpression network for global discovery of conserved genetic modules
    • STUART, J., SEGAL, E., KOLLEE, D., AND KIM, S. 2003. A gene-coexpression network for global discovery of conserved genetic modules. Science 302, 249-255.
    • (2003) Science , vol.302 , pp. 249-255
    • STUART, J.1    SEGAL, E.2    KOLLEE, D.3    KIM, S.4
  • 45
    • 84996033884 scopus 로고
    • Recognition of largest common fragment among a variety of chemical structures
    • TAKAHASHI, Y, SATOH, Y., AND SASAKI, S. 1987. Recognition of largest common fragment among a variety of chemical structures. Analyt. Sci., 23-28.
    • (1987) Analyt. Sci , pp. 23-28
    • TAKAHASHI, Y.1    SATOH, Y.2    SASAKI, S.3
  • 46
    • 0033027794 scopus 로고    scopus 로고
    • Interpreting patterns of gene expression with self-organizing maps: Methods and application to hematopoietic differentiation
    • TAMAYO, P., SOLNI, D., MESIEOV, J., ZHU, Q., KITAEEEWAN, S., DMITEOVSKY, E., LANDEE, E., AND GOLUB, T. 1999. Interpreting patterns of gene expression with self-organizing maps: Methods and application to hematopoietic differentiation. Proc. Natl. Acad. Sci. 96, 6, 2907-2912.
    • (1999) Proc. Natl. Acad. Sci , vol.96 , Issue.6 , pp. 2907-2912
    • TAMAYO, P.1    SOLNI, D.2    MESIEOV, J.3    ZHU, Q.4    KITAEEEWAN, S.5    DMITEOVSKY, E.6    LANDEE, E.7    GOLUB, T.8
  • 48
    • 0035861532 scopus 로고    scopus 로고
    • TONG, A. H., EVANGELISTA, M., PAESONS, A. B., AND ET AL. 2001. Systematic genetic analysis with ordered arrays of yeast deletion mutants. Science 294, 2364-2368.
    • TONG, A. H., EVANGELISTA, M., PAESONS, A. B., AND ET AL. 2001. Systematic genetic analysis with ordered arrays of yeast deletion mutants. Science 294, 2364-2368.
  • 49
    • 10744230485 scopus 로고    scopus 로고
    • TONG, A. H. Y, LESAGE, G., BADEE, G. D., AND ET AL. 2004. Global mapping of the yeast genetic interaction network. Science 303, 808-813.
    • TONG, A. H. Y, LESAGE, G., BADEE, G. D., AND ET AL. 2004. Global mapping of the yeast genetic interaction network. Science 303, 808-813.
  • 50
    • 0035875553 scopus 로고    scopus 로고
    • Issues in cDNA microarray analysis: Quality filtering, channel normalization, models of variations and assessment of gene effects
    • TSENG, G., OH, M., ROHLIN, L., LIAO, J., AND WONG, W 2001. Issues in cDNA microarray analysis: Quality filtering, channel normalization, models of variations and assessment of gene effects. Nucleic Acids Resear. 29, 2549-2557.
    • (2001) Nucleic Acids Resear , vol.29 , pp. 2549-2557
    • TSENG, G.1    OH, M.2    ROHLIN, L.3    LIAO, J.4    WONG, W.5
  • 51
    • 0034628508 scopus 로고    scopus 로고
    • UETZ, P., GIOT, L., CAGNEY, G., AND ET. AL. 2000. A comprehensive analysis of protein-protein interactions in Saccharomyces Cerevisiae. Nature 403 , 6770, 601-603.
    • UETZ, P., GIOT, L., CAGNEY, G., AND ET. AL. 2000. A comprehensive analysis of protein-protein interactions in Saccharomyces Cerevisiae. Nature 403 , 6770, 601-603.
  • 53
    • 0035999974 scopus 로고    scopus 로고
    • Clustering gene expression data using a graph-theoretic approach: An application of minimum spanning trees
    • XU, Y, OLMAN, V., AND XU, D. 2002. Clustering gene expression data using a graph-theoretic approach: an application of minimum spanning trees. Bioinformatics 18, 536-545.
    • (2002) Bioinformatics , vol.18 , pp. 536-545
    • XU, Y.1    OLMAN, V.2    XU, D.3


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