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Volumn 201, Issue 1-4, 2009, Pages 219-232

Ecology, DNA, and the future of microbial source tracking

Author keywords

Fecal coliform; Fecal pollution; Remediation

Indexed keywords

BIOCHEMICAL CHARACTERISTICS; DNA DATA; ECOLOGICAL PARAMETERS; FECAL BACTERIA; FECAL COLIFORM; FECAL POLLUTION; MICROBIAL SOURCE TRACKING; MULTIPLE SOURCE; NATURAL SOURCES; RELATIVE IMPORTANCE; SINGLE SOURCE; WATER SAMPLES;

EID: 67449122430     PISSN: 00496979     EISSN: 15732932     Source Type: Journal    
DOI: 10.1007/s11270-008-9939-x     Document Type: Article
Times cited : (4)

References (45)
  • 2
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • R. I. Amann W. Ludwig K. H. Schleifer 1995 Phylogenetic identification and in situ detection of individual microbial cells without cultivation Microbiological Reviews 59 143 169
    • (1995) Microbiological Reviews , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.H.3
  • 7
    • 34250215976 scopus 로고    scopus 로고
    • Bacterial taxa abundance pattern in an industrial wastewater treatment system determined by the full rRNA cycle approach
    • DOI 10.1111/j.1462-2920.2007.01298.x
    • E. L. Figuerola L. Erijman 2007 Bacterial taxa abundance pattern in an industrial wastewater treatment system determined by the full rRNA cycle approach Environmental Microbiology 9 7 1780 1789 (Pubitemid 46905416)
    • (2007) Environmental Microbiology , vol.9 , Issue.7 , pp. 1780-1789
    • Figuerola, E.L.M.1    Erijman, L.2
  • 9
    • 0023229528 scopus 로고
    • Establishment of the microflora and anaerobic fungi in the rumen of lambs
    • G. Fonty P. Gouet J. P. Jouany J. Senaud 1987 Establishment of the microflora and anaerobic fungi in the rumen of lambs Journal of General Microbiology 133 7 1835 1843 (Pubitemid 17140469)
    • (1987) Journal of General Microbiology , vol.133 , Issue.7 , pp. 1835-1843
    • Fonty, G.1    Gouet, P.2    Jouany, J.-P.3    Senaud, J.4
  • 10
    • 0037425743 scopus 로고    scopus 로고
    • Gut flora in health and disease
    • DOI 10.1016/S0140-6736(03)12489-0
    • F. Guarner J. Malagelada 2003 Gut flora in health and disease Lancet 361 9356 512 519 (Pubitemid 36173720)
    • (2003) Lancet , vol.361 , Issue.9356 , pp. 512-519
    • Guarner, F.1    Malagelada, J.-R.2
  • 13
    • 0035487318 scopus 로고    scopus 로고
    • Counting the Uncountable: Statistical Approaches to Estimating Microbial Diversity
    • DOI 10.1128/AEM.67.10.4399-4406.2001
    • J. B. Hughes J. J. Hellmann T. H. Ricketts B. J. Bohannan 2001 Counting the uncountable: Statistical approaches to estimating microbial diversity Applied and Environmental Microbiology 67 10 4399 4406 (Pubitemid 33646064)
    • (2001) Applied and Environmental Microbiology , vol.67 , Issue.10 , pp. 4399-4406
    • Hughes, J.B.1    Hellmann, J.J.2    Ricketts, T.H.3    Bohannan, B.J.M.4
  • 15
    • 33745153077 scopus 로고    scopus 로고
    • Development of Bacteroides 16S rRNA gene taqman-based real-time PCR assays for estimation of total, human, and bovine fecal pollution in water
    • DOI 10.1128/AEM.01036-05
    • A. Layton L. McKay D. Williams V. Garrett R. Gentry G. Sayler 2006 Development of Bacteroides 16S rRNA gene TaqMan-based real-time PCR assays for estimation of total, human, and bovine fecal pollution in water Applied and Environmental Microbiology 72 6 4214 4224 (Pubitemid 43894889)
    • (2006) Applied and Environmental Microbiology , vol.72 , Issue.6 , pp. 4214-4224
    • Layton, A.1    McKay, L.2    Williams, D.3    Garrett, V.4    Gentry, R.5    Sayler, G.6
  • 16
    • 67449122589 scopus 로고    scopus 로고
    • Rutgers Equine Science Center New Brunswick Malinowski, K. (2007). New Jersey equine industry. New Brunswick: Rutgers Equine Science Center
    • K. Malinowski 2007 New Jersey equine industry Rutgers Equine Science Center New Brunswick Malinowski, K. (2007). New Jersey equine industry. New Brunswick: Rutgers Equine Science Center http://www.hallnj.org/cm/streamer.jsp? dId=1000297&fId=560, http://esc.rutgers.edu/news-more/PDF-Files/2007-Equine- Economic-Impact-Study-Report.pdf.
    • (2007) New Jersey Equine Industry
    • Malinowski, K.1
  • 17
    • 28444451110 scopus 로고    scopus 로고
    • Reversal of eutrophication following sewage treatment upgrades in the New River Estuary, North Carolina
    • M. A. Mallin M. R. McIver H. A. Wells D. C. Parsons V. L. Johnson 2005 Reversal of eutrophication following sewage treatment upgrades in the New River Estuary, North Carolina Journal Estuaries and Coasts 28 5 750 760 (Pubitemid 41729394)
    • (2005) Estuaries , vol.28 , Issue.5 , pp. 750-760
    • Mallin, M.A.1    McIver, M.R.2    Wells, H.A.3    Parsons, D.C.4    Johnson, V.L.5
  • 19
    • 33750014515 scopus 로고    scopus 로고
    • Vertebrate guts shape their microbiota
    • M. McFall-Ngai 2006 Vertebrate guts shape their microbiota Cell 127 2 247 249
    • (2006) Cell , vol.127 , Issue.2 , pp. 247-249
    • McFall-Ngai, M.1
  • 20
    • 67449135410 scopus 로고    scopus 로고
    • MCHD. Monmouth County Health Department Freehold MCHD (2007). Branch Port Creek sampling stations. Freehold: Monmouth County Health Department
    • MCHD 2007 Branch Port Creek sampling stations Monmouth County Health Department Freehold MCHD (2007). Branch Port Creek sampling stations. Freehold: Monmouth County Health Department http://co.monmouth.nj.us/documents/121/ MonParkWebsiteLarge.pdf.
    • (2007) Branch Port Creek Sampling Stations
  • 21
    • 0037992680 scopus 로고    scopus 로고
    • Evidence for localized bacterial loading as the cause of chronic beach closings in a freshwater marina
    • DOI 10.1016/S0043-1354(03)00068-X
    • S. L. McLellan A. K. Salmore 2003 Evidence for localized bacterial loading as the cause of chronic beach closings in a freshwater marina Water Research 37 11 2700 2708 (Pubitemid 36564848)
    • (2003) Water Research , vol.37 , Issue.11 , pp. 2700-2708
    • McLellan, S.L.1    Salmore, A.K.2
  • 22
    • 0029084396 scopus 로고
    • Intestinal floras of populations that have a high risk of colon cancer
    • W. E. Moore L. H. Moore 1995 Intestinal floras of populations that have a high risk of colon cancer Applied and Environmental Microbiology 61 3202 3207
    • (1995) Applied and Environmental Microbiology , vol.61 , pp. 3202-3207
    • Moore, W.E.1    Moore, L.H.2
  • 23
    • 67449161135 scopus 로고    scopus 로고
    • NJWC New Jersey weather and climate network
    • NJWC. (2008). New Jersey weather and climate network. http://climate.rutgers.edu/njwxnet/ and Point Pleasant data.
    • (2008)
  • 24
    • 0029083327 scopus 로고
    • Proteolytic activity of the Bacteroides fragilis enterotoxin causes fluid secretion and intestinal damage in vivo
    • R. J. Obiso D. M. Lyerly R. L. van Tassell T. D. Wilkins 1995 Proteolytic activity of the Bacteroides fragilis enterotoxin causes fluid secretion and intestinal damage in vivo Infection and Immunity 63 10 3820 3826
    • (1995) Infection and Immunity , vol.63 , Issue.10 , pp. 3820-3826
    • Obiso, R.J.1    Lyerly, D.M.2    Van Tassell, R.L.3    Wilkins, T.D.4
  • 25
    • 33745594044 scopus 로고    scopus 로고
    • The gut flora as a forgotten organ
    • DOI 10.1038/sj.embor.7400731, PII 7400731
    • A. M. O'Hara F. Shanahan 2006 The gut flora as a forgotten organ EMBO Reports 7 7 688 693 (Pubitemid 43986264)
    • (2006) EMBO Reports , vol.7 , Issue.7 , pp. 688-693
    • O'Hara, A.M.1    Shanahan, F.2
  • 28
    • 33749997498 scopus 로고    scopus 로고
    • Reciprocal Gut Microbiota Transplants from Zebrafish and Mice to Germ-free Recipients Reveal Host Habitat Selection
    • DOI 10.1016/j.cell.2006.08.043, PII S0092867406012268
    • J. F. Rawls M. A. Mahowald R. E. Ley J. I. Gordon 2006 Reciprocal gut microbiota transplants from zebra fish and mice to germ-free recipients reveal host habitat selection Cell 127 2 423 433 (Pubitemid 44572375)
    • (2006) Cell , vol.127 , Issue.2 , pp. 423-433
    • Rawls, J.F.1    Mahowald, M.A.2    Ley, R.E.3    Gordon, J.I.4
  • 29
    • 0036339393 scopus 로고    scopus 로고
    • The effect of feed withdrawal on Escherichia coli shedding in beef cattle
    • DOI 10.1016/S0956-7135(01)00096-2, PII S0956713501000962
    • C. A. Reid S. M. Avery P. Warriss S. Buncic 2002 The effect of feed withdrawal on Escherichia coli shedding in beef cattle Food Control 13 6-7 393 398 (Pubitemid 34855371)
    • (2002) Food Control , vol.13 , Issue.6-7 , pp. 393-398
    • Reid, C.-A.1    Avery, S.M.2    Warriss, P.3    Buncic, S.4
  • 30
    • 0024207294 scopus 로고
    • Survival of Escherichia coli and Salmonella spp. in estuarine environments
    • M. W. Rhodes H. Kator 1988 Survival of Escherichia coli and Salmonella spp. in estuarine environments Applied and Environmental Microbiology 54 12 2902 2907 (Pubitemid 19002383)
    • (1988) Applied and Environmental Microbiology , vol.54 , Issue.12 , pp. 2902-2907
    • Rhodes, M.W.1    Kator, H.2
  • 31
    • 84888620855 scopus 로고    scopus 로고
    • Past pandemics and their outcome. Chapter 1
    • CRC Boca Raton 1420060872 Ryan, J. R. (2008). Past pandemics and their outcome. Chapter 1. In J. R. Ryan (Ed.), Pandemic influenza, emergency planning and community awareness. Boca Raton: CRC
    • J. R. Ryan 2008 Past pandemics and their outcome. Chapter 1 J. R. Ryan Pandemic influenza, emergency planning and community awareness CRC Boca Raton 1420060872 Ryan, J. R. (2008). Past pandemics and their outcome. Chapter 1. In J. R. Ryan (Ed.), Pandemic influenza, emergency planning and community awareness. Boca Raton: CRC http://books.google.com/books?hl=en&lr=&id= t13C-eWhOX4C&oi=fnd&pg=PA3&dq=+%22second+cholera+pandemic%22& ots=zVatDXLgK8&sig=FU6M0ynqcUFClM-Ht7XNvVVDi4g ISBN:1420060872.
    • (2008) Pandemic Influenza, Emergency Planning and Community Awareness
    • Ryan, J.R.1    Ryan, J.R.2
  • 32
    • 34447310608 scopus 로고    scopus 로고
    • Frequent occurrence of the human-specific Bacteroides fecal marker at an open coast marine beach: Relationship to waves, tides and traditional indicators
    • DOI 10.1111/j.1462-2920.2007.01319.x
    • A. E. Santoro A. B. Boehm 2007 Frequent occurrence of the human-specific Bacteroides fecal marker at an open coast marine beach: Relationship to waves, tides and traditional indicators Environmental Microbiology 9 8 2038 2049 (Pubitemid 47057356)
    • (2007) Environmental Microbiology , vol.9 , Issue.8 , pp. 2038-2049
    • Santoro, A.E.1    Boehm, A.B.2
  • 33
    • 34547421264 scopus 로고    scopus 로고
    • Relationships between Bacteroides 16S rRNA genetic markers and presence of bacterial enteric pathogens and conventional fecal indicators
    • DOI 10.1016/j.watres.2007.03.028, PII S0043135407002126
    • O. Savichtcheva N. Okayama S. Okabe 2007 Relationships between Bacteroides 16S rRNA genetic markers and presence of bacterial enteric pathogens and conventional fecal indicators Water Research 41 16 3615 3628 (Pubitemid 47176108)
    • (2007) Water Research , vol.41 , Issue.16 , pp. 3615-3628
    • Savichtcheva, O.1    Okayama, N.2    Okabe, S.3
  • 34
    • 15444362001 scopus 로고    scopus 로고
    • Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness
    • DOI 10.1128/AEM.71.3.1501-1506.2005
    • P. D. Schloss J. Handelsman 2005 Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness Applied and Environmental Microbiology 71 3 1501 1506 (Pubitemid 40396689)
    • (2005) Applied and Environmental Microbiology , vol.71 , Issue.3 , pp. 1501-1506
    • Schloss, P.D.1    Handelsman, J.2
  • 35
    • 39049092823 scopus 로고    scopus 로고
    • A statistical toolbox for metagenomics: Assessing functional diversity in microbial communities
    • P. D. Schloss J. Handelsman 2008 A statistical toolbox for metagenomics: Assessing functional diversity in microbial communities BMC Bioinformatics 9 34
    • (2008) BMC Bioinformatics , vol.9 , pp. 34
    • Schloss, P.D.1    Handelsman, J.2
  • 36
    • 4644275463 scopus 로고    scopus 로고
    • Integration of microbial ecology and statistics: A test to compare gene libraries
    • DOI 10.1128/AEM.70.9.5485-5492.2004
    • P. D. Schloss B. R. Larget Handelsman 2004 Integration of microbial ecology and statistics: A test to compare gene libraries Applied and Environmental Microbiology 70 5485 5492 (Pubitemid 39279626)
    • (2004) Applied and Environmental Microbiology , vol.70 , Issue.9 , pp. 5485-5492
    • Schloss, P.D.1    Larget, B.R.2    Handelsman, J.3
  • 37
    • 0035463837 scopus 로고    scopus 로고
    • Quantitative Comparisons of 16S rRNA Gene Sequence Libraries from Environmental Samples
    • DOI 10.1128/AEM.67.9.4374-4376.2001
    • D. R. Singleton M. A. Furlong S. L. Rathbun W. B. Whitman 2001 Quantitative comparisons of 16S rRNA gene sequence libraries from environmental samples Applied and Environmental Microbiology 67 4374 4376 (Pubitemid 33641744)
    • (2001) Applied and Environmental Microbiology , vol.67 , Issue.9 , pp. 4374-4376
    • Singleton, D.R.1    Furlong, M.A.2    Rathbun, S.L.3    Whitman, W.B.4
  • 39
    • 0004290685 scopus 로고
    • Churchill London Snow, J. (1855). On the mode of communication of cholera. London: Churchill
    • J. Snow 1855 On the mode of communication of cholera Churchill London Snow, J. (1855). On the mode of communication of cholera. London: Churchill http://www.ph.ucla.edu/epi/snow/broadstreetpump.html, http://www.ph.ucla.edu/ epi/snow/snowbook.html.
    • (1855) On the Mode of Communication of Cholera
    • Snow, J.1
  • 40
    • 34247622189 scopus 로고    scopus 로고
    • Performance, design, and analysis in microbial source tracking studies
    • DOI 10.1128/AEM.02473-06
    • D. M. Stoeckel V. J. Harwood 2007 Performance, design, and analysis in microbial source tracking studies Applied and Environmental Microbiology 73 8 2405 2415 (Pubitemid 46668731)
    • (2007) Applied and Environmental Microbiology , vol.73 , Issue.8 , pp. 2405-2415
    • Stoeckel, D.M.1    Harwood, V.J.2
  • 41
    • 0032755259 scopus 로고    scopus 로고
    • Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut
    • A. Suau R. Bonnet M. Sutren J. J. Godon G. R. Gibson M. D. Collins 1999 Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut Applied and Environmental Microbiology 6 11 4799 4807
    • (1999) Applied and Environmental Microbiology , vol.6 , Issue.11 , pp. 4799-4807
    • Suau, A.1    Bonnet, R.2    Sutren, M.3    Godon, J.J.4    Gibson, G.R.5    Collins, M.D.6
  • 42
    • 33646592369 scopus 로고    scopus 로고
    • USEPA. US Environmental Protection Agency, Office of Research and Development Cincinnati
    • USEPA (2005). Microbial source tracking guide document. Cincinnati: US Environmental Protection Agency, Office of Research and Development EPA Publication No. EPA/600-R-05-064.
    • (2005) Microbial Source Tracking Guide Document
  • 44
    • 0025255488 scopus 로고
    • Preprothaumatin II is processed to biological activity in Solanum tuberosum
    • M. Witty 1990 Preprothaumatin II is processed to biological activity in Solanum tuberosum Biotechnology Letters 12 131 136 (Pubitemid 20116581)
    • (1990) Biotechnology Letters , vol.12 , Issue.2 , pp. 131-136
    • Witty, M.1


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