-
2
-
-
0000461280
-
Confidence limits on phylogenies: an approach using the bootstrap
-
Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39 (1985) 783-791
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
3
-
-
0003991673
-
-
Sinauer Associates, Sunderland, Massachusetts
-
Felsenstein J. Inferring phylogenies (2004), Sinauer Associates, Sunderland, Massachusetts
-
(2004)
Inferring phylogenies
-
-
Felsenstein, J.1
-
4
-
-
0035029534
-
Maximum-likelihood phylogenetic analysis under a covarion-like model
-
Galtier N. Maximum-likelihood phylogenetic analysis under a covarion-like model. Mol. Biol. Evol. 18 (2001) 866-873
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 866-873
-
-
Galtier, N.1
-
5
-
-
26444556992
-
A call for likelihood phylogenetics even when the process of sequence evolution is heterogenerous
-
Gaucher E.A., and Miyamoto M.M. A call for likelihood phylogenetics even when the process of sequence evolution is heterogenerous. Mol. Phylogenet. Evol. 37 (2005) 928-931
-
(2005)
Mol. Phylogenet. Evol.
, vol.37
, pp. 928-931
-
-
Gaucher, E.A.1
Miyamoto, M.M.2
-
6
-
-
0036606898
-
Predicting functional divergence in protein evolution by site-specifc rate shifts
-
Gaucher E.A., Gu X., Miyamoto M.M., and Benner S.A. Predicting functional divergence in protein evolution by site-specifc rate shifts. Trends Biochem. Sci. 27 (2002) 315-321
-
(2002)
Trends Biochem. Sci.
, vol.27
, pp. 315-321
-
-
Gaucher, E.A.1
Gu, X.2
Miyamoto, M.M.3
Benner, S.A.4
-
7
-
-
0032728408
-
Statistical methods for testing functional divergence after gene duplication
-
Gu X. Statistical methods for testing functional divergence after gene duplication. Mol. Biol. Evol. 16 (1999) 1664-1674
-
(1999)
Mol. Biol. Evol.
, vol.16
, pp. 1664-1674
-
-
Gu, X.1
-
8
-
-
0036205440
-
DIVERGE: phylogeny-based analysis for functional-structural divergence of a protein family
-
Gu X., and Vander V.K. DIVERGE: phylogeny-based analysis for functional-structural divergence of a protein family. Bioinformatics 18 (2002) 500-501
-
(2002)
Bioinformatics
, vol.18
, pp. 500-501
-
-
Gu, X.1
Vander, V.K.2
-
9
-
-
0036097894
-
Testing a Covariotide Model of DNA Substitution
-
Huelsenbeck J.P. Testing a Covariotide Model of DNA Substitution. Mol. Biol. Evol. 19 (2002) 698-707
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 698-707
-
-
Huelsenbeck, J.P.1
-
10
-
-
0034904214
-
A mitogenomic perspective on the basal teleostean phylogeny: resolving higher-level relationships with longer DNA sequences
-
Inoue J.G., Miya M., Tsukamoto K., and Nishida M. A mitogenomic perspective on the basal teleostean phylogeny: resolving higher-level relationships with longer DNA sequences. Mol. Phylogenet. Evol. 20 (2001) 275-285
-
(2001)
Mol. Phylogenet. Evol.
, vol.20
, pp. 275-285
-
-
Inoue, J.G.1
Miya, M.2
Tsukamoto, K.3
Nishida, M.4
-
11
-
-
7244221755
-
Performance of maximum parsimony and likelihood phylogenetics when evolution is heterogeneous
-
Kolaczkowski B., and Thorton J.W. Performance of maximum parsimony and likelihood phylogenetics when evolution is heterogeneous. Nature 431 (2004) 980-984
-
(2004)
Nature
, vol.431
, pp. 980-984
-
-
Kolaczkowski, B.1
Thorton, J.W.2
-
12
-
-
0003421005
-
-
Sinauer Associates, Sunderland, Massachusetts
-
Li W.H. Molecular Evolution (1997), Sinauer Associates, Sunderland, Massachusetts
-
(1997)
Molecular Evolution
-
-
Li, W.H.1
-
14
-
-
0036134757
-
Heterotachy, an important process of protein evolution
-
Lopez P., Casane D., and Philippe H. Heterotachy, an important process of protein evolution. Mol. Biol. Evol. 19 (2002) 1-7
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 1-7
-
-
Lopez, P.1
Casane, D.2
Philippe, H.3
-
15
-
-
0034749003
-
Mitogenomic exploration of higher teleostean phylogenies: a case study for moderate-scale evolutionary genomics with 38 newly determined complete mitochondrial DNA sequences
-
Miya M., Kawaguchi A., and Nishida M. Mitogenomic exploration of higher teleostean phylogenies: a case study for moderate-scale evolutionary genomics with 38 newly determined complete mitochondrial DNA sequences. Mol. Biol. Evol. 18 (2001) 1993-2009
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 1993-2009
-
-
Miya, M.1
Kawaguchi, A.2
Nishida, M.3
-
16
-
-
0037215848
-
Major patterns of higher teleostean phylogenies: a new perspective based on 100 complete mitochondrial sequences
-
Miya M., et al. Major patterns of higher teleostean phylogenies: a new perspective based on 100 complete mitochondrial sequences. Mol. Phylogenet. Evol. 26 (2003) 121-138
-
(2003)
Mol. Phylogenet. Evol.
, vol.26
, pp. 121-138
-
-
Miya, M.1
-
17
-
-
24944507742
-
Common and specific amino acid residues in the prokaryotic polypeptide release factors RF1 and RF2: possible functional implications
-
Oparina N.J., Kalinina O.V., Gelfand M.S., and Kisselev L.L. Common and specific amino acid residues in the prokaryotic polypeptide release factors RF1 and RF2: possible functional implications. Nucleic Acids Res. 33 (2005) 5226-5234
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 5226-5234
-
-
Oparina, N.J.1
Kalinina, O.V.2
Gelfand, M.S.3
Kisselev, L.L.4
-
19
-
-
0031574072
-
The Clustal X windows interface: flexible strategies for multiple sequences alignment aided by quality analysis tools
-
Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., and Higgins D.G. The Clustal X windows interface: flexible strategies for multiple sequences alignment aided by quality analysis tools. Nucleic Acids Res. 24 (1997) 4876-4882
-
(1997)
Nucleic Acids Res.
, vol.24
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
20
-
-
0031986279
-
Modeling the covarion hypothesis of nuclear substitution
-
Tuffley C., and Steel M. Modeling the covarion hypothesis of nuclear substitution. Math. Biosci. 147 (1998) 63-91
-
(1998)
Math. Biosci.
, vol.147
, pp. 63-91
-
-
Tuffley, C.1
Steel, M.2
-
21
-
-
0034922711
-
Functional divergence in the caspase gene family and altered functional constraints: statistical analysis and prediction
-
Wang Y., and Gu X. Functional divergence in the caspase gene family and altered functional constraints: statistical analysis and prediction. Genetics 158 (2001) 1311-1320
-
(2001)
Genetics
, vol.158
, pp. 1311-1320
-
-
Wang, Y.1
Gu, X.2
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