The communities of endophytic diazotrophic bacteria in cultivated rice (Oryza sativa L.)

Applied Soil Ecology

Volumn 42, Issue 2, 2009, Pages 141-149

  Prakamhang, Janpen ^a   Minamisawa, Kiwamu ^b   Teamtaisong, Kamonluck ^a   Boonkerd, Nantakorn ^a   Teaumroong, Neung ^a  

^a SURANAREE UNIVERSITY OF TECHNOLOGY   (Thailand)

^b TOHOKU UNIVERSITY   (Japan)

Author keywords

Cultivated rice; Endophytic diazotrophic bacteria; Microbial community; nifH

Indexed keywords

BACTERIA (MICROORGANISMS); BREVUNDIMONAS; BREVUNDIMONAS AURANTIACA; ENTEROBACTER; ENTEROBACTER CLOACAE SUBSP. DISSOLVENS; ENTEROBACTERIACEAE; ORYZA SATIVA; PANTOEA AGGLOMERANS; PSEUDOMONAS;

EID: 67349253602     PISSN: 09291393     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.apsoil.2009.02.008     Document Type: Article

References (44)

1. Andro T., Chambost J.P., Kotoujansky A., Cattaneo J., Bertheau Y., Barras F., Van Gijsegem F., and Coleno A. Mutants of Erwinia chrysanthemi defective in secretion of pectinase and cellulase. J. Bacteriol. 160 (1984) 1199-1203
2. Araujo W.L., Marcon J., Maccheroni Jr. W., van Elsas J.D., van Vuurde J.W.L., and Azevedo J.L. Diversity of endophytic bacterial populations and their interaction with Xylella fastidiosa in citrus plants. Appl. Environ. Microbiol. 68 (2002) 4906-4914
3. 2-fixing ones. Soil Biol. Biochem. 20 (1988) 907-913
4. Briones A.M., Okabe S., Umemiya Y., Ramsing N.B., Reichardt W., and Okuyama H. Influence of different cultivars on populations of ammonia-oxidizing bacteria in the root environment of rice. Appl. Environ. Microbiol. 68 (2002) 3067-3075
5. Costacurta A., Mazzafera P., and Rosato Y.B. Indole-3-acetic acid biosynthesis by Xanthomonas axonopodis pv. citri is increased in the presence of plant leaf extracts. FEMS Microbiol. Lett. 159 (1998) 215-220
6. Dellaporta S.L., Wood J., and Hicks J.B. A plant DNA minipreparation: version II. Plant Mol. Biol. Rep. 1 (1983) 19-21
7. Doetsch R.N. Determinative methods of light microscopy. In: Gerhardt P., Murray R.G.E., Costilow R.N., Nester E.W., Wood W.A., Krieg N.R., and Phillips G. (Eds). Manual of Methods for General Bacteriology (1981), American Society for Microbiology, Washington, DC 21-33
8. Egener T., Hurek T., and Reinhold-Hurek B. Endophytic expression of nif genes of Azoarcus sp. strain BH72 in rice roots. Mol. Plant-Microbe Interact. 12 (1999) 813-819
9. Elbeltagy A., Nishioka K., Sato T., Suzuki H., Ye B., Hamada T., Isawa T., Mitsui H., and Minamisawa K. Endophytic colonization and in planta nitrogen fixation by a Herbaspirillum sp. isolated from wild rice species. Appl. Environ. Microbiol. 67 (2001) 5285-5293
10. Feng Y., Shen D., and Song W. Rice endophyte Pantoea agglomerans YS19 promotes host plant growth and affects allocations of host photosynthates. J. Appl. Microbiol. 100 (2006) 938-945
11. Fuentes-Ramirez L.E., Caballero-Mellado J., Sepulveda J., and Martinez-Romero E. Colonization of sugarcane by Acetobacter diazotrophicus is inhibited by high N-fertilization. FEMS Microbiol. Ecol. 29 (1999) 117-128
12. Green S.J., Inbar E., Michel Jr. F.C., Hadar Y., and Minz D. Succession of bacterial communities during early plant development: transition from seed to root and effect of compost amendment. Appl. Environ. Microbiol. 72 (2006) 3975-3983
13. Gyaneshwar P., James E.K., Reddy P.M., and Ladha J.K. Herbaspirillum colonization increases growth and nitrogen accumulation in aluminium-tolerant rice varieties. New Phytol. 154 (2002) 131-145
14. James E.K., and Olivares F.L. Infection and colonization of sugarcane and other Graminaceous plants by endophytic diazotrophs. Crit. Rev. Plant Sci. 17 (1998) 77-119
15. Kim J.S., Dungan R.S., Kwon S.W., and Weon H.Y. The community composition of root-associated bacteria of the tomato plant. World J. Microbiol. Biotechnol. 22 (2006) 1267-1273
16. Lima E., Boddey R.M., and Doebereiner J. Quantification of biological nitrogen fixation associated with sugar cane using a super (15) N aided nitrogen balance. Soil Biol. Biochem. 19 (1987) 165-170
17. 2-fixation in a beech forest soil. Soil Biol. Biochem. 30 (1997) 153-158
18. Loiret F.G., Ortega E., Kleiner D., Ortega-Rodés P., Rodés R., and Dong Z. A putative new endophytic nitrogen-fixing bacterium Pantoea sp. from sugarcane. J. Appl. Microbiol. 97 (2004) 504-511
19. Manassila M., Nuntagij A., Kotepong S., Boonkerd N., and Teaumroong N. Characterization and monitoring of selected rhizobial strains isolated from tree legumes in Thailand. Afr. J. Biotechnol. 6 (2007) 1393-1402
20. Martin D.E., and Reinhold-Hurek B. Distinct roles of PII-like signal transmitter proteins and amtB in regulation of nif gene expression, nitrogenase activity, and posttranslational modification of NifH in Azoarcus sp. strain BH72. J. Bacteriol. 184 (2002) 2251-2259
21. Mateos P., Jiminez-Zurdo J., Chen A., Squatrini S., Haack E., Martinez-Molina P., Hubbel D., and Dazzo F.B. Cell associated pectinolytic and cellulolytic enzymes in Rhizobium leguminosarum bv. trifolii. Appl. Environ. Microbiol. 58 (1992) 1816-1822
22. Miller J.H. Experiments in Molecular Genetics (1972), Cold Spring Harbor, New York
23. Minamisawa K., Nishioka K., Miyaki T., Ye B., Miyamoto T., You M., Saito A., Saito M., Barraquio W.L., Teaumroong N., Sein T., and Sato T. Anaerobic nitrogen-fixing consortia consisting of Clostridia isolated from gramineous plants. Appl. Environ. Microbiol. 70 (2004) 3096-3102
24. Miyamoto T., Kawahara M., and Minamisawa K. Novel endophytic nitrogen-fixing Clostridia from the grass Miscanthus sinensis as revealed by Terminal Restriction Fragment Length Polymorphism analysis. Appl. Environ. Microbiol. 70 (2004) 6580-6586
25. Muthukumarasamy R., Cleenwerck I., Revathi G., Vadivelu M., Janssens D., Hoste B., Ui Gum K., Park K.-D., Young Son C., Sa T., and Caballero-Mellado J. Natural association of Gluconacetobacter diazotrophicus and diazotrophic Acetobacter peroxydans with wetland rice. System Appl. Microbiol. 28 (2005) 277-286
26. Muthukumarasamy R., Kang U.G., Park K.D., Jeon W.T., Park C.Y., Cho Y.S., Kwon S.W., Song J., Roh D.H., and Revathi G. Enumeration, isolation and identification of diazotrophs from Korean wetland rice varieties grown with long-term application of N and compost and their short-term inoculation effect on rice plants. J. Appl. Microbiol. 102 (2007) 981-991
27. Muthukumarasamy R., Revathi G., and Lakshminarasimhan C. Influence of N fertilisation on the isolation of Acetobacter diazotrophicus and Herbaspirillum spp. from Indian sugarcane varieties. Biol. Fertil. Soils 29 (1999) 157-164
28. Mylona P., Pawlowski K., and Bisseling T. Symbiotic Nitrogen Fixation. Plant Cell 7 (1995) 869-885
29. Ovreas L., Forney L., Daae F.L., and Torsvik V. Distribution of bacterioplankton in meromictic Lake Saelenvannet, as determined by denaturing gradient gel electrophoresis of PCR-amplified gene fragments coding for 16S rRNA. Appl. Environ. Microbiol. 63 (1997) 3367-3373
30. Poly F., Ranjard L., Nazaret S., Gourbiere F., and Monrozier L.J. Comparison of nifH gene pools in soils and soil microenvironments with contrasting properties. Appl. Environ. Microbiol. 67 (2001) 2255-2262
31. Rasolomampianina R., Bailly X., Fetiarison R., Rabevohitra R., Bena G., Ramaroson L., Raherimandimby M., Moulin L., De Lajudie P., Dreyfus B., and Avarre J.C. Nitrogen-fixing nodules from rose wood legume trees (Dalbergia spp.) endemic to Madagascar host seven different genera belonging to alpha- and beta-Proteobacteria. Mol. Ecol. 14 (2005) 4135-4146
32. Reinhold-Hurek B., Maes T., Gemmer S., Van Montagu M., and Hurek T. An endoglucanase is involved in infection of rice roots by the not-cellulose-metabolizing endophyte Azoarcus sp. strain BH72. Mol. Plant-Microbe Interact. 19 (2006) 181-188
33. Reis V.M., Baldani J.I., Baldani V.L.D., and Dobereiner J. Biological dinitrogen fixation in Gramineae and palm trees. Crit. Rev. Plant Sci. 19 (2000) 227-247
34. Roesch L.F.W., Olivares F.L., Pereira Passaglia L.M., Selbach P.A., de Sa E.L.S., and de Camargo F.A.O. Characterization of diazotrophic bacteria associated with maize: effect of plant genotype, ontogeny and nitrogen-supply. World J. Microbiol. Biotechnol. 22 (2006) 967-974
35. Roesti D., Ineichen K., Braissant O., Redecker D., Wiemken A., and Aragno M. Bacteria associated with spores of the arbuscular mycorrhizal fungi Glomus geosporum and Glomus constrictum. Appl. Environ. Microbiol. 71 (2005) 6673-6679
36. Ruppel S., Hecht-Buchholz C., Remus R., Ortmann U., and Schmelzer R. Settlement of the diazotrophic, phytoeffective bacterial strain Pantoea agglomerans on and within winter wheat: an investigation using ELISA and transmission electron microscopy. Plant Soil 145 (1992) 261-273
37. Scott N.A. Soil aggregation and organic matter mineralization in forests and grasslands: plant species effects. Soil Sci. Soc. Am. J. 62 (1998) 1081-1089
38. Tan Z., Hurek T., and Reinhold-Hurek B. Effect of N-fertilization, plant genotype and environmental conditions on nifH gene pools in roots of rice. Environ. Microbiol. 5 (2003) 1009-1015
39. Teaumroong N., Teamtaisong K., Sooksa-ngun T., and Boonkerd N. The dizotrophic endophytic bacteria in Thai rice. In: Suriyaphan O., Hansakdi E., Jongruaysup S., and Simons R. (Eds). Proceeding of the Fifth ESAFS International Conference on Rice Environments and Rice Products. Krabi, Thailand (2001) 147-160
40. Verma S.C., Singh A., Chowdhury S.P., and Tripathi A.K. Endophytic colonization ability of two deep-water rice endophytes, Pantoea sp. and Ochrobactrum sp. using green fluorescent protein reporter. Biotechnol. Lett. 26 (2004) 425-429
41. 2-fixing bacterial strains isolated from rice fields along the Yangtze River Plain. J. Basic Microbiol. 46 (2006) 56-63
42. Xie Z., Dou Y., Ping S., Chen M., Wang G., Elmerich C., and Lin M. Interaction between NifL and NifA in the nitrogen-fixing Pseudomonas stutzeri A1501. Microbiology 152 (2006) 3535-3542
43. You M., Nishiguchi T., Saito A., Isawa T., Mitsui H., and Minamisawa K. Expression of the nifH gene of a Herbaspirillum endophyte in wild rice species: daily rhythm during the light-dark cycle. Appl. Environ. Microbiol. 71 (2005) 8183-8190
44. Zinniel D.K., Lambrecht P., Harris N.B., Feng Z., Kuczmarski D., Higley s P., Ishimaru C.A., Arunakumari A., Barletta R.G., and Vidaver A.K. Isolation and characterization of endophytic colonizing bacteria from agronomic crops and Prairie plants. Appl. Environ. Microbiol. 68 (2002) 2198-2208