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Volumn 22, Issue 12, 2006, Pages 1267-1273

The community composition of root-associated bacteria of the tomato plant

Author keywords

16S rDNA; Flavobacterium; Plant microbe interactions; Proteobacteria; Rhizosphere; Tomato plant

Indexed keywords

CLONING; DISEASES; DNA; PLANTS (BOTANY); SOILS; TISSUE;

EID: 33751533483     PISSN: 09593993     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11274-006-9171-z     Document Type: Article
Times cited : (18)

References (26)
  • 2
    • 27444437013 scopus 로고    scopus 로고
    • The rhizosphere as a reservoir for opportunistic human pathogenic bacteria
    • Berg G, Eberl L, Hartmann A (2005) The rhizosphere as a reservoir for opportunistic human pathogenic bacteria. Environ Microbiol 7:1673-1685
    • (2005) Environ Microbiol , vol.7 , pp. 1673-1685
    • Berg, G.1    Eberl, L.2    Hartmann, A.3
  • 4
    • 0038316604 scopus 로고    scopus 로고
    • Distribution of biosurfactant-producing bacteria in undisturbed and contaminated arid southwestern soils
    • Bodour AA, Drees KP, Maier RM (2003) Distribution of biosurfactant- producing bacteria in undisturbed and contaminated arid southwestern soils. Appl Environ Microbiol 69:3280-3287
    • (2003) Appl Environ Microbiol , vol.69 , pp. 3280-3287
    • Bodour, A.A.1    Drees, K.P.2    Maier, R.M.3
  • 5
    • 0030023359 scopus 로고    scopus 로고
    • Endophytes: They're not just fungi!
    • Chanway CP (1996) Endophytes: they're not just fungi! Can J Bot 74:321-322
    • (1996) Can J Bot , vol.74 , pp. 321-322
    • Chanway, C.P.1
  • 6
    • 4544309186 scopus 로고    scopus 로고
    • Functional and molecular responses of soil microbial communities under differing soil management practices
    • Crecchio C, Gelsomino A, Ambrosoli R, Minati JL, Ruggiero P (2004) Functional and molecular responses of soil microbial communities under differing soil management practices. Soil Biol Biochem 36:1873-1883
    • (2004) Soil Biol Biochem , vol.36 , pp. 1873-1883
    • Crecchio, C.1    Gelsomino, A.2    Ambrosoli, R.3    Minati, J.L.4    Ruggiero, P.5
  • 7
    • 0032914126 scopus 로고    scopus 로고
    • Levels of bacterial community diversity in four arid soils compared by cultivation and 16S rRNA gene cloing
    • Dunbar J, Takala S, Barns SM, Davis JA, Kuske CR (1999) Levels of bacterial community diversity in four arid soils compared by cultivation and 16S rRNA gene cloing. Appl Environ Microbiol 65:1662-1669
    • (1999) Appl Environ Microbiol , vol.65 , pp. 1662-1669
    • Dunbar, J.1    Takala, S.2    Barns, S.M.3    Davis, J.A.4    Kuske, C.R.5
  • 8
    • 0037447816 scopus 로고    scopus 로고
    • Efficient recovery of environmental DNA for expression cloning by indirect extraction methods
    • Gabor EM, de Vries EJ, Janssen DB (2003) Efficient recovery of environmental DNA for expression cloning by indirect extraction methods. FEMS Microbiol Ecol 44:153-163
    • (2003) FEMS Microbiol Ecol , vol.44 , pp. 153-163
    • Gabor, E.M.1    De Vries, E.J.2    Janssen, D.B.3
  • 9
    • 0032080593 scopus 로고    scopus 로고
    • Diversity of root-associated bacteria associated with field-grown canola (Brassica napus L.) and wheat (Triticum aestivum L)
    • Germidia JJ, Siciliano SD, de Freitas JR, Seib AM (1998) Diversity of root-associated bacteria associated with field-grown canola (Brassica napus L.) and wheat (Triticum aestivum L). FEMS Microbiol Ecol 26:43-50
    • (1998) FEMS Microbiol Ecol , vol.26 , pp. 43-50
    • Germidia, J.J.1    Siciliano, S.D.2    De Freitas, J.R.3    Seib, A.M.4
  • 10
    • 0031662188 scopus 로고    scopus 로고
    • Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity
    • Hugenholtz P, Goebel BM, Pace NR (1998) Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity. J Bacteriol 180:4765-4774
    • (1998) J Bacteriol , vol.180 , pp. 4765-4774
    • Hugenholtz, P.1    Goebel, B.M.2    Pace, N.R.3
  • 12
    • 3242682772 scopus 로고    scopus 로고
    • Persistence of enterohemorrhagic Escherichia coli O157:H7 in soil and on leaf lettuce and parsley grown in fields treated with contaminated manure composts or irrigation water
    • Islam M, Doyle MP, Phatak SC, Millner P, Jiang X (2004) Persistence of enterohemorrhagic Escherichia coli O157:H7 in soil and on leaf lettuce and parsley grown in fields treated with contaminated manure composts or irrigation water. J Food Protect 67:1365-1370
    • (2004) J Food Protect , vol.67 , pp. 1365-1370
    • Islam, M.1    Doyle, M.P.2    Phatak, S.C.3    Millner, P.4    Jiang, X.5
  • 14
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura M (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111-120
    • (1980) J Mol Evol , vol.16 , pp. 111-120
    • Kimura, M.1
  • 15
    • 3242810318 scopus 로고    scopus 로고
    • MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment
    • Kumar S, Tamura K, Nei M (2004) MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5:150-163
    • (2004) Brief Bioinform , vol.5 , pp. 150-163
    • Kumar, S.1    Tamura, K.2    Nei, M.3
  • 16
    • 0001857117 scopus 로고
    • 16S/23S rRNA sequencing
    • Stackebrandt E, Goodfellow M (Eds), John Wiley and Sons, New York, ISBN 0471929069
    • Lane DJ (1991) 16S/23S rRNA sequencing. In: Stackebrandt E, Goodfellow M (Eds), Nucleic acid techniques in bacterial systematics. John Wiley and Sons, New York, pp 115-175, ISBN 0471929069
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 115-175
    • Lane, D.J.1
  • 17
    • 0001093837 scopus 로고    scopus 로고
    • Microbial diversity in soil: The need for a combined approach using molecular and cultivation techniques
    • van Elsas JD, Trevors JT, Wellington EMH (eds). Marcel Dekker, New York, ISBN 0824794362
    • Liesack W, Peter HJ, Rainey FA, Ward-Rainey NL, Stackebrandt E (1997) Microbial diversity in soil: the need for a combined approach using molecular and cultivation techniques. In: van Elsas JD, Trevors JT, Wellington EMH (eds) Modern soil microbiology. Marcel Dekker, New York, pp 375-439, ISBN 0824794362
    • (1997) Modern Soil Microbiology , pp. 375-439
    • Liesack, W.1    Peter, H.J.2    Rainey, F.A.3    Ward-Rainey, N.L.4    Stackebrandt, E.5
  • 18
    • 0031424069 scopus 로고    scopus 로고
    • Deleterious rhizosphere bacteria: An integrating perspective
    • Nehl DG, Allen SJ, Brown JF (1996) Deleterious rhizosphere bacteria: an integrating perspective. Appl Soil Ecol 5:1-20
    • (1996) Appl Soil Ecol , vol.5 , pp. 1-20
    • Nehl, D.G.1    Allen, S.J.2    Brown, J.F.3
  • 20
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic tree
    • Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic tree. Mol Biol Evol 4:406-425
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 22
    • 0036113280 scopus 로고    scopus 로고
    • Bacterial community composition in the rhizosphere of a transgenic, herbicide-resistant maize (Zea mays) and comparison to its non-transgenic cultivar Bosphore
    • Schmalenberger A, Tebbe CC (2002) Bacterial community composition in the rhizosphere of a transgenic, herbicide-resistant maize (Zea mays) and comparison to its non-transgenic cultivar Bosphore. FEMS Microbiol Ecol 40:29-37
    • (2002) FEMS Microbiol Ecol , vol.40 , pp. 29-37
    • Schmalenberger, A.1    Tebbe, C.C.2
  • 23
    • 0032874455 scopus 로고    scopus 로고
    • Comparison of bacterial community structures in the rhizosphere of tomato plants grown in soils suppressive and conducive towards bacterial wilt
    • Shiomi Y, Nishiyama M, Onizuka T, Marumoto T (1999) Comparison of bacterial community structures in the rhizosphere of tomato plants grown in soils suppressive and conducive towards bacterial wilt. Appl Environ Microbiol 65:3996-4001
    • (1999) Appl Environ Microbiol , vol.65 , pp. 3996-4001
    • Shiomi, Y.1    Nishiyama, M.2    Onizuka, T.3    Marumoto, T.4
  • 24
    • 0035487320 scopus 로고    scopus 로고
    • Bulk and rhizosphere soil bacterial communities studied by denaturing gradient gel electrophoresis: Plant-dependent enrichment and seasonal shifts revealed
    • Smalla K, Wieland G, Buchner A, Zock A, Parzy J, Kaiser S, Roskot N, Heuer H, Berg G (2001) Bulk and rhizosphere soil bacterial communities studied by denaturing gradient gel electrophoresis: plant-dependent enrichment and seasonal shifts revealed. Appl Environ Microbiol 67:4742-4751
    • (2001) Appl Environ Microbiol , vol.67 , pp. 4742-4751
    • Smalla, K.1    Wieland, G.2    Buchner, A.3    Zock, A.4    Parzy, J.5    Kaiser, S.6    Roskot, N.7    Heuer, H.8    Berg, G.9
  • 25
    • 0031574072 scopus 로고    scopus 로고
    • Clustal X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucl Acids Res 25:4876-48842
    • (1997) Nucl Acids Res , vol.25 , pp. 4876-48842
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 26
    • 0025903592 scopus 로고
    • Rapid method for direct extraction of DNA from soil and sediments
    • Tsai Y-L, Olsen BH (1991) Rapid method for direct extraction of DNA from soil and sediments. Appl Environ Microbiol 57:1070-1074
    • (1991) Appl Environ Microbiol , vol.57 , pp. 1070-1074
    • Tsai, Y.-L.1    Olsen, B.H.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.