-
1
-
-
0034712743
-
The new animal phylogeny: reliability and implications
-
Adoutte A., Balavoine G., Lartillot N., Lespinet O., Prud'homme B., and de Rosa R. The new animal phylogeny: reliability and implications. Proc. Natl. Acad. Sci. U. S. A. 97 (2000) 4453-4456
-
(2000)
Proc. Natl. Acad. Sci. U. S. A.
, vol.97
, pp. 4453-4456
-
-
Adoutte, A.1
Balavoine, G.2
Lartillot, N.3
Lespinet, O.4
Prud'homme, B.5
de Rosa, R.6
-
2
-
-
1342309210
-
Parallel Metropolis coupled Markov chain Monte Carlo for Bayesian phylogenetic inference
-
Altekar G., Dwarkadas S., Huelsenbeck J.P., and Ronquist F. Parallel Metropolis coupled Markov chain Monte Carlo for Bayesian phylogenetic inference. Bioinformatics 20 (2004) 407-415
-
(2004)
Bioinformatics
, vol.20
, pp. 407-415
-
-
Altekar, G.1
Dwarkadas, S.2
Huelsenbeck, J.P.3
Ronquist, F.4
-
3
-
-
1842427267
-
Bilaterian phylogeny based on analyses of a region of the sodium-potassium ATPase α-subunit gene
-
Anderson F.E., Córdoba A.J., and Thollesson M. Bilaterian phylogeny based on analyses of a region of the sodium-potassium ATPase α-subunit gene. J. Mol. Evol. 58 (2004) 252-268
-
(2004)
J. Mol. Evol.
, vol.58
, pp. 252-268
-
-
Anderson, F.E.1
Córdoba, A.J.2
Thollesson, M.3
-
4
-
-
0033561361
-
Animal mitochondrial genomes
-
Boore J.L. Animal mitochondrial genomes. Nucleic Acids Res. 27 (1999) 1767-1780
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 1767-1780
-
-
Boore, J.L.1
-
5
-
-
0031769998
-
Big trees from little genomes: mitochondrial gene order as a phylogenetic tool
-
Boore J.L., and Brown W.M. Big trees from little genomes: mitochondrial gene order as a phylogenetic tool. Curr. Opin. Genet. Dev. 8 (1998) 668-674
-
(1998)
Curr. Opin. Genet. Dev.
, vol.8
, pp. 668-674
-
-
Boore, J.L.1
Brown, W.M.2
-
6
-
-
0028976102
-
Deducing the pattern of arthropod phylogeny from mitochondrial DNA rearrangements
-
Boore J.L., Collins T.M., Stanton D., Daehler L.L., and Brown W.M. Deducing the pattern of arthropod phylogeny from mitochondrial DNA rearrangements. Nature 376 (1995) 163-165
-
(1995)
Nature
, vol.376
, pp. 163-165
-
-
Boore, J.L.1
Collins, T.M.2
Stanton, D.3
Daehler, L.L.4
Brown, W.M.5
-
7
-
-
19944400426
-
Sequencing and comparing whole mitochondrial genomes of animals
-
Boore J.L., Macey J.R., and Medina M. Sequencing and comparing whole mitochondrial genomes of animals. Methods Enzymol. 395 (2005) 311-348
-
(2005)
Methods Enzymol.
, vol.395
, pp. 311-348
-
-
Boore, J.L.1
Macey, J.R.2
Medina, M.3
-
9
-
-
34347222917
-
Sequencing complete mitochondrial and plastid genomes
-
Burger G., Lavrov D.V., Forget L., and Lang B.F. Sequencing complete mitochondrial and plastid genomes. Nat. Protoc. 2 (2007) 603-614
-
(2007)
Nat. Protoc.
, vol.2
, pp. 603-614
-
-
Burger, G.1
Lavrov, D.V.2
Forget, L.3
Lang, B.F.4
-
10
-
-
0034615125
-
Monophyly of brachiopods and phoronids: reconciliation of molecular evidence with Linnaean classification (the subphylum Phoroniformea nov.)
-
Cohen B.L. Monophyly of brachiopods and phoronids: reconciliation of molecular evidence with Linnaean classification (the subphylum Phoroniformea nov.). Proc. Biol. Sci. 267 (2000) 225-231
-
(2000)
Proc. Biol. Sci.
, vol.267
, pp. 225-231
-
-
Cohen, B.L.1
-
11
-
-
0030580792
-
Lophophorate phylogeny
-
Conway-Morris S., Cohen B.L., Gawthrop A.B., Cavalier-Smith T., and Winnepenninckx B. Lophophorate phylogeny. Science 272 (1996) 282
-
(1996)
Science
, vol.272
, pp. 282
-
-
Conway-Morris, S.1
Cohen, B.L.2
Gawthrop, A.B.3
Cavalier-Smith, T.4
Winnepenninckx, B.5
-
12
-
-
0033600273
-
Hox genes in brachiopods and priapulids and protostome evolution
-
de Rosa R., et al. Hox genes in brachiopods and priapulids and protostome evolution. Nature 399 (1999) 772-776
-
(1999)
Nature
, vol.399
, pp. 772-776
-
-
de Rosa, R.1
-
14
-
-
0031978181
-
Basecalling of automated sequencer traces using phred. II. Error probabilities
-
Ewing B., and Green P. Basecalling of automated sequencer traces using phred. II. Error probabilities. Genome Res. 8 (1998) 186-194
-
(1998)
Genome Res.
, vol.8
, pp. 186-194
-
-
Ewing, B.1
Green, P.2
-
15
-
-
0031955518
-
Basecalling of automated sequencer traces using phred. I. Accuracy assessment
-
Ewing B., Hillier L., Wendl M., and Green P. Basecalling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res. 8 (1998) 175-185
-
(1998)
Genome Res.
, vol.8
, pp. 175-185
-
-
Ewing, B.1
Hillier, L.2
Wendl, M.3
Green, P.4
-
16
-
-
33750222992
-
Comparison of chaetognath mitochondrial genomes and phylogenetical implications
-
Faure E., and Casanova J.P. Comparison of chaetognath mitochondrial genomes and phylogenetical implications. Mitochondrion 6 (2006) 258-262
-
(2006)
Mitochondrion
, vol.6
, pp. 258-262
-
-
Faure, E.1
Casanova, J.P.2
-
17
-
-
0028528103
-
DNA primers for amplification of mitochondrial cytochrome oxidase subunit I from diverse metazoan invertebrates
-
Folmer O., Black M., Hoeh W., Lutz R., and Vrijenhoek R. DNA primers for amplification of mitochondrial cytochrome oxidase subunit I from diverse metazoan invertebrates. Mol. Mar. Biol. Biotechnol. 3 (1994) 294-299
-
(1994)
Mol. Mar. Biol. Biotechnol.
, vol.3
, pp. 294-299
-
-
Folmer, O.1
Black, M.2
Hoeh, W.3
Lutz, R.4
Vrijenhoek, R.5
-
18
-
-
20344364091
-
Bryozoan statoblasts. Tracking environmental change using lake sediments
-
Francis D.R. Bryozoan statoblasts. Tracking environmental change using lake sediments. Zoological Indicators 4 (2001) 105-123
-
(2001)
Zoological Indicators
, vol.4
, pp. 105-123
-
-
Francis, D.R.1
-
19
-
-
0033935083
-
A review of arthropod phylogeny. New data based on ribosomal DNA sequences and direct character optimization
-
Giribet G., and Ribera C. A review of arthropod phylogeny. New data based on ribosomal DNA sequences and direct character optimization. Cladistics 16 (2000) 204-231
-
(2000)
Cladistics
, vol.16
, pp. 204-231
-
-
Giribet, G.1
Ribera, C.2
-
20
-
-
0034350325
-
Triploblastic relationships with emphasis on the acoelomates and the position of Gnathostomulida, Cycliophora, Plathelminthes and Chaetognatha: a combined approach of 18S rDNA sequences and morphology
-
Giribet G., Distel D.L., Polz M., Sterrer W., and Wheeler W.C. Triploblastic relationships with emphasis on the acoelomates and the position of Gnathostomulida, Cycliophora, Plathelminthes and Chaetognatha: a combined approach of 18S rDNA sequences and morphology. Syst. Biol. 49 (2000) 539-562
-
(2000)
Syst. Biol.
, vol.49
, pp. 539-562
-
-
Giribet, G.1
Distel, D.L.2
Polz, M.3
Sterrer, W.4
Wheeler, W.C.5
-
21
-
-
0031955116
-
Consed: a graphical tool for sequence finishing
-
Gordon D., Abajian C., and Green P. Consed: a graphical tool for sequence finishing. Genome Res. 8 (1998) 195-202
-
(1998)
Genome Res.
, vol.8
, pp. 195-202
-
-
Gordon, D.1
Abajian, C.2
Green, P.3
-
22
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
Guindon S., and Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52 (2003) 696-704
-
(2003)
Syst. Biol.
, vol.52
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
23
-
-
0002974151
-
Convergence in the feeding apparatuses of lophophorates and pterobranch hemichordates revealed by 18S rDNA: an interpretation
-
Halanych K.M. Convergence in the feeding apparatuses of lophophorates and pterobranch hemichordates revealed by 18S rDNA: an interpretation. Biol. Bull. 190 (1996) 1-5
-
(1996)
Biol. Bull.
, vol.190
, pp. 1-5
-
-
Halanych, K.M.1
-
25
-
-
0028921291
-
Evidence from 18S ribosomal DNA that the lophophorates are protostome animals
-
Halanych K.M., Bacheller J.D., Aguinaldo A.M., Liva S.M., Hillis D.M., and Lake J.A. Evidence from 18S ribosomal DNA that the lophophorates are protostome animals. Science 267 (1995) 1641-1643
-
(1995)
Science
, vol.267
, pp. 1641-1643
-
-
Halanych, K.M.1
Bacheller, J.D.2
Aguinaldo, A.M.3
Liva, S.M.4
Hillis, D.M.5
Lake, J.A.6
-
26
-
-
3242702091
-
The mitochondrial genome of Paraspadella gotoi is highly reduced and reveals that chaetognaths are a sister group to protostomes
-
Helfenbein K.G., Fourcade H.M., Vanjani R.G., and Boore J.L. The mitochondrial genome of Paraspadella gotoi is highly reduced and reveals that chaetognaths are a sister group to protostomes. Proc. Natl. Acad. Sci. U. S. A. 101 (2004) 10639-10643
-
(2004)
Proc. Natl. Acad. Sci. U. S. A.
, vol.101
, pp. 10639-10643
-
-
Helfenbein, K.G.1
Fourcade, H.M.2
Vanjani, R.G.3
Boore, J.L.4
-
27
-
-
37249017533
-
Multigene analysis of lophophorate and chaetognath phylogenetic relationships
-
Helmkampf M., Bruchhaus I., and Hausdorf B. Multigene analysis of lophophorate and chaetognath phylogenetic relationships. Mol. Phylogenet. Evol. 46 (2007) 206-214
-
(2007)
Mol. Phylogenet. Evol.
, vol.46
, pp. 206-214
-
-
Helmkampf, M.1
Bruchhaus, I.2
Hausdorf, B.3
-
28
-
-
0034849408
-
MRBAYES: Bayesian inference of phylogenetic trees
-
Huelsenbeck J.P., and Ronquist F. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17 (2001) 754-755
-
(2001)
Bioinformatics
, vol.17
, pp. 754-755
-
-
Huelsenbeck, J.P.1
Ronquist, F.2
-
29
-
-
0004045615
-
-
McGraw-Hill, New York
-
Hyman L.H. The Invertebrates: Smaller Coelomate Groups, Chaetognatha, Hemichordata, Pogonophora, Phoronida, Ectoprocta, Brachiopoda, Sipunculida, the Coelomate Bilateria (1959), McGraw-Hill, New York
-
(1959)
The Invertebrates: Smaller Coelomate Groups, Chaetognatha, Hemichordata, Pogonophora, Phoronida, Ectoprocta, Brachiopoda, Sipunculida, the Coelomate Bilateria
-
-
Hyman, L.H.1
-
30
-
-
36448991500
-
Clustal W and Clustal X version 2.0
-
Larkin M.A., et al. Clustal W and Clustal X version 2.0. Bioinformatics 23 (2007) 2947-2948
-
(2007)
Bioinformatics
, vol.23
, pp. 2947-2948
-
-
Larkin, M.A.1
-
31
-
-
0030854739
-
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence
-
Lowe T.M., and Eddy S.R. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25 (1997) 955-964
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 955-964
-
-
Lowe, T.M.1
Eddy, S.R.2
-
32
-
-
0029889447
-
18S rRNA suggests that Entoprocta are protostomes, unrelated to Ectoprocta
-
Mackey L.Y., Winnepenninckx B., De Wachter R., Backeljau T., Emschermann P., and Garey J.R. 18S rRNA suggests that Entoprocta are protostomes, unrelated to Ectoprocta. J. Mol. Evol. 42 (1996) 552-559
-
(1996)
J. Mol. Evol.
, vol.42
, pp. 552-559
-
-
Mackey, L.Y.1
Winnepenninckx, B.2
De Wachter, R.3
Backeljau, T.4
Emschermann, P.5
Garey, J.R.6
-
33
-
-
0036184428
-
Testing the new animal phylogeny: first use of combined large-subunit and small-subunit rRNA gene sequences to classify the protostomes
-
Mallatt J., and Winchell C.J. Testing the new animal phylogeny: first use of combined large-subunit and small-subunit rRNA gene sequences to classify the protostomes. Mol. Biol. Evol. 19 (2002) 289-301
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 289-301
-
-
Mallatt, J.1
Winchell, C.J.2
-
34
-
-
0001772782
-
Animal phylogeny in the light of the trochaea theory
-
Nielsen C. Animal phylogeny in the light of the trochaea theory. Biol. J. Linn. Soc. 25 (1985) 243-299
-
(1985)
Biol. J. Linn. Soc.
, vol.25
, pp. 243-299
-
-
Nielsen, C.1
-
35
-
-
0000404758
-
Structure and function of metazoan ciliary bands and their phylogenetic significance
-
Nielsen C. Structure and function of metazoan ciliary bands and their phylogenetic significance. Acta Zool. 68 (1987) 205-262
-
(1987)
Acta Zool.
, vol.68
, pp. 205-262
-
-
Nielsen, C.1
-
37
-
-
0036625764
-
The phylogenetic position of Entoprocta, Ectoprocta, Phoronida, and Brachiopoda
-
Nielsen C. The phylogenetic position of Entoprocta, Ectoprocta, Phoronida, and Brachiopoda. Integ. Comp. Biol. 42 (2002) 685-691
-
(2002)
Integ. Comp. Biol.
, vol.42
, pp. 685-691
-
-
Nielsen, C.1
-
39
-
-
0003410015
-
-
Version 2.0, University of Hawaii, Department of Zoology and Kewalo Marine Laboratory
-
Palumbi, S., Martin, A., Romano, S., McMillan, W.O., Stice, L., and Grabowski, G., 1991. The Simple Fool's Guide to PCR. Version 2.0, University of Hawaii, Department of Zoology and Kewalo Marine Laboratory.
-
(1991)
The Simple Fool's Guide to PCR
-
-
Palumbi, S.1
Martin, A.2
Romano, S.3
McMillan, W.O.4
Stice, L.5
Grabowski, G.6
-
40
-
-
3242713476
-
Evidence from Hox genes that bryozoans are lophotrochozoans
-
Passamaneck Y.J., and Halanych K.M. Evidence from Hox genes that bryozoans are lophotrochozoans. Evol. Dev. 6 (2004) 275-281
-
(2004)
Evol. Dev.
, vol.6
, pp. 275-281
-
-
Passamaneck, Y.J.1
Halanych, K.M.2
-
41
-
-
0034945410
-
Animal phylogeny and the ancestry of bilaterians: inferences from morphology and 18S rDNA gene sequences
-
Peterson K.J., and Eernisse D.J. Animal phylogeny and the ancestry of bilaterians: inferences from morphology and 18S rDNA gene sequences. Evol. Dev. 3 (2001) 170-205
-
(2001)
Evol. Dev.
, vol.3
, pp. 170-205
-
-
Peterson, K.J.1
Eernisse, D.J.2
-
42
-
-
0041386108
-
MrBayes 3: Bayesian phylogenetic inference under mixed models
-
Ronquist F., and Huelsenbeck J.P. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19 (2003) 1572-1574
-
(2003)
Bioinformatics
, vol.19
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
44
-
-
0033595767
-
Analysis of the complete mitochondrial DNA sequence of the brachiopod Terebratulina retusa places Brachiopoda within the protostomes
-
Stechmann A., and Schlegel M. Analysis of the complete mitochondrial DNA sequence of the brachiopod Terebratulina retusa places Brachiopoda within the protostomes. Proc. R. Soc. London Ser. B 266 (1999) 2043-2052
-
(1999)
Proc. R. Soc. London Ser. B
, vol.266
, pp. 2043-2052
-
-
Stechmann, A.1
Schlegel, M.2
-
45
-
-
0027175482
-
The phylogenetic affinities of the chaetognaths: a molecular analysis
-
Telford M.J., and Holland P.W.H. The phylogenetic affinities of the chaetognaths: a molecular analysis. Mol. Biol. Evol. 10 (1993) 660-676
-
(1993)
Mol. Biol. Evol.
, vol.10
, pp. 660-676
-
-
Telford, M.J.1
Holland, P.W.H.2
-
46
-
-
33745180188
-
The complete mitochondrial genome of Flustrellidra hispida and the phylogenetic position of Bryozoa among the Metazoa
-
Waeschenbach A.M., Telford M.J., Porter J.S., and Littlewood D.T.J. The complete mitochondrial genome of Flustrellidra hispida and the phylogenetic position of Bryozoa among the Metazoa. Mol. Phylogenet. Evol. 40 (2006) 195-207
-
(2006)
Mol. Phylogenet. Evol.
, vol.40
, pp. 195-207
-
-
Waeschenbach, A.M.1
Telford, M.J.2
Porter, J.S.3
Littlewood, D.T.J.4
-
48
-
-
10244240599
-
Automatic annotation of organellar genomes with DOGMA
-
Wyman S.K., Jansen R.K., and Boore J.L. Automatic annotation of organellar genomes with DOGMA. Bioinformatics 20 (2004) 3252-3255
-
(2004)
Bioinformatics
, vol.20
, pp. 3252-3255
-
-
Wyman, S.K.1
Jansen, R.K.2
Boore, J.L.3
-
49
-
-
0001284561
-
Phylogeny of the Metazoa based on morphological and 18S ribosomal DNA evidence
-
Zrzavy J., Mihulka S., Kepka P., Bezdek A., and Tiez D. Phylogeny of the Metazoa based on morphological and 18S ribosomal DNA evidence. Cladistics 14 (1998) 249-285
-
(1998)
Cladistics
, vol.14
, pp. 249-285
-
-
Zrzavy, J.1
Mihulka, S.2
Kepka, P.3
Bezdek, A.4
Tiez, D.5
|