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Volumn 439, Issue 1-2, 2009, Pages 17-24

The complete mitochondrial genome of Watersipora subtorquata (Bryozoa, Gymnolaemata, Ctenostomata) with phylogenetic consideration of Bryozoa

Author keywords

Bryozoa; Complete mitochondrial genome; Gene rearrangement; Lophophorate; Lophotrochozoa; Phylogenetics

Indexed keywords

AMINO ACID SEQUENCE; ARTICLE; BRYOZOA; CONTROLLED STUDY; CTENOSTOMATA; GENE AMPLIFICATION; GENE IDENTIFICATION; GYMNOLAEMATA; MITOCHONDRIAL GENOME; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; WATERSIPORA SUBTORQUATA;

EID: 67349248113     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2009.03.003     Document Type: Article
Times cited : (15)

References (49)
  • 2
    • 1342309210 scopus 로고    scopus 로고
    • Parallel Metropolis coupled Markov chain Monte Carlo for Bayesian phylogenetic inference
    • Altekar G., Dwarkadas S., Huelsenbeck J.P., and Ronquist F. Parallel Metropolis coupled Markov chain Monte Carlo for Bayesian phylogenetic inference. Bioinformatics 20 (2004) 407-415
    • (2004) Bioinformatics , vol.20 , pp. 407-415
    • Altekar, G.1    Dwarkadas, S.2    Huelsenbeck, J.P.3    Ronquist, F.4
  • 3
    • 1842427267 scopus 로고    scopus 로고
    • Bilaterian phylogeny based on analyses of a region of the sodium-potassium ATPase α-subunit gene
    • Anderson F.E., Córdoba A.J., and Thollesson M. Bilaterian phylogeny based on analyses of a region of the sodium-potassium ATPase α-subunit gene. J. Mol. Evol. 58 (2004) 252-268
    • (2004) J. Mol. Evol. , vol.58 , pp. 252-268
    • Anderson, F.E.1    Córdoba, A.J.2    Thollesson, M.3
  • 4
    • 0033561361 scopus 로고    scopus 로고
    • Animal mitochondrial genomes
    • Boore J.L. Animal mitochondrial genomes. Nucleic Acids Res. 27 (1999) 1767-1780
    • (1999) Nucleic Acids Res. , vol.27 , pp. 1767-1780
    • Boore, J.L.1
  • 5
    • 0031769998 scopus 로고    scopus 로고
    • Big trees from little genomes: mitochondrial gene order as a phylogenetic tool
    • Boore J.L., and Brown W.M. Big trees from little genomes: mitochondrial gene order as a phylogenetic tool. Curr. Opin. Genet. Dev. 8 (1998) 668-674
    • (1998) Curr. Opin. Genet. Dev. , vol.8 , pp. 668-674
    • Boore, J.L.1    Brown, W.M.2
  • 6
    • 0028976102 scopus 로고
    • Deducing the pattern of arthropod phylogeny from mitochondrial DNA rearrangements
    • Boore J.L., Collins T.M., Stanton D., Daehler L.L., and Brown W.M. Deducing the pattern of arthropod phylogeny from mitochondrial DNA rearrangements. Nature 376 (1995) 163-165
    • (1995) Nature , vol.376 , pp. 163-165
    • Boore, J.L.1    Collins, T.M.2    Stanton, D.3    Daehler, L.L.4    Brown, W.M.5
  • 7
    • 19944400426 scopus 로고    scopus 로고
    • Sequencing and comparing whole mitochondrial genomes of animals
    • Boore J.L., Macey J.R., and Medina M. Sequencing and comparing whole mitochondrial genomes of animals. Methods Enzymol. 395 (2005) 311-348
    • (2005) Methods Enzymol. , vol.395 , pp. 311-348
    • Boore, J.L.1    Macey, J.R.2    Medina, M.3
  • 9
    • 34347222917 scopus 로고    scopus 로고
    • Sequencing complete mitochondrial and plastid genomes
    • Burger G., Lavrov D.V., Forget L., and Lang B.F. Sequencing complete mitochondrial and plastid genomes. Nat. Protoc. 2 (2007) 603-614
    • (2007) Nat. Protoc. , vol.2 , pp. 603-614
    • Burger, G.1    Lavrov, D.V.2    Forget, L.3    Lang, B.F.4
  • 10
    • 0034615125 scopus 로고    scopus 로고
    • Monophyly of brachiopods and phoronids: reconciliation of molecular evidence with Linnaean classification (the subphylum Phoroniformea nov.)
    • Cohen B.L. Monophyly of brachiopods and phoronids: reconciliation of molecular evidence with Linnaean classification (the subphylum Phoroniformea nov.). Proc. Biol. Sci. 267 (2000) 225-231
    • (2000) Proc. Biol. Sci. , vol.267 , pp. 225-231
    • Cohen, B.L.1
  • 12
    • 0033600273 scopus 로고    scopus 로고
    • Hox genes in brachiopods and priapulids and protostome evolution
    • de Rosa R., et al. Hox genes in brachiopods and priapulids and protostome evolution. Nature 399 (1999) 772-776
    • (1999) Nature , vol.399 , pp. 772-776
    • de Rosa, R.1
  • 14
    • 0031978181 scopus 로고    scopus 로고
    • Basecalling of automated sequencer traces using phred. II. Error probabilities
    • Ewing B., and Green P. Basecalling of automated sequencer traces using phred. II. Error probabilities. Genome Res. 8 (1998) 186-194
    • (1998) Genome Res. , vol.8 , pp. 186-194
    • Ewing, B.1    Green, P.2
  • 15
    • 0031955518 scopus 로고    scopus 로고
    • Basecalling of automated sequencer traces using phred. I. Accuracy assessment
    • Ewing B., Hillier L., Wendl M., and Green P. Basecalling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res. 8 (1998) 175-185
    • (1998) Genome Res. , vol.8 , pp. 175-185
    • Ewing, B.1    Hillier, L.2    Wendl, M.3    Green, P.4
  • 16
    • 33750222992 scopus 로고    scopus 로고
    • Comparison of chaetognath mitochondrial genomes and phylogenetical implications
    • Faure E., and Casanova J.P. Comparison of chaetognath mitochondrial genomes and phylogenetical implications. Mitochondrion 6 (2006) 258-262
    • (2006) Mitochondrion , vol.6 , pp. 258-262
    • Faure, E.1    Casanova, J.P.2
  • 17
    • 0028528103 scopus 로고
    • DNA primers for amplification of mitochondrial cytochrome oxidase subunit I from diverse metazoan invertebrates
    • Folmer O., Black M., Hoeh W., Lutz R., and Vrijenhoek R. DNA primers for amplification of mitochondrial cytochrome oxidase subunit I from diverse metazoan invertebrates. Mol. Mar. Biol. Biotechnol. 3 (1994) 294-299
    • (1994) Mol. Mar. Biol. Biotechnol. , vol.3 , pp. 294-299
    • Folmer, O.1    Black, M.2    Hoeh, W.3    Lutz, R.4    Vrijenhoek, R.5
  • 18
    • 20344364091 scopus 로고    scopus 로고
    • Bryozoan statoblasts. Tracking environmental change using lake sediments
    • Francis D.R. Bryozoan statoblasts. Tracking environmental change using lake sediments. Zoological Indicators 4 (2001) 105-123
    • (2001) Zoological Indicators , vol.4 , pp. 105-123
    • Francis, D.R.1
  • 19
    • 0033935083 scopus 로고    scopus 로고
    • A review of arthropod phylogeny. New data based on ribosomal DNA sequences and direct character optimization
    • Giribet G., and Ribera C. A review of arthropod phylogeny. New data based on ribosomal DNA sequences and direct character optimization. Cladistics 16 (2000) 204-231
    • (2000) Cladistics , vol.16 , pp. 204-231
    • Giribet, G.1    Ribera, C.2
  • 20
    • 0034350325 scopus 로고    scopus 로고
    • Triploblastic relationships with emphasis on the acoelomates and the position of Gnathostomulida, Cycliophora, Plathelminthes and Chaetognatha: a combined approach of 18S rDNA sequences and morphology
    • Giribet G., Distel D.L., Polz M., Sterrer W., and Wheeler W.C. Triploblastic relationships with emphasis on the acoelomates and the position of Gnathostomulida, Cycliophora, Plathelminthes and Chaetognatha: a combined approach of 18S rDNA sequences and morphology. Syst. Biol. 49 (2000) 539-562
    • (2000) Syst. Biol. , vol.49 , pp. 539-562
    • Giribet, G.1    Distel, D.L.2    Polz, M.3    Sterrer, W.4    Wheeler, W.C.5
  • 21
    • 0031955116 scopus 로고    scopus 로고
    • Consed: a graphical tool for sequence finishing
    • Gordon D., Abajian C., and Green P. Consed: a graphical tool for sequence finishing. Genome Res. 8 (1998) 195-202
    • (1998) Genome Res. , vol.8 , pp. 195-202
    • Gordon, D.1    Abajian, C.2    Green, P.3
  • 22
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon S., and Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52 (2003) 696-704
    • (2003) Syst. Biol. , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 23
    • 0002974151 scopus 로고    scopus 로고
    • Convergence in the feeding apparatuses of lophophorates and pterobranch hemichordates revealed by 18S rDNA: an interpretation
    • Halanych K.M. Convergence in the feeding apparatuses of lophophorates and pterobranch hemichordates revealed by 18S rDNA: an interpretation. Biol. Bull. 190 (1996) 1-5
    • (1996) Biol. Bull. , vol.190 , pp. 1-5
    • Halanych, K.M.1
  • 26
    • 3242702091 scopus 로고    scopus 로고
    • The mitochondrial genome of Paraspadella gotoi is highly reduced and reveals that chaetognaths are a sister group to protostomes
    • Helfenbein K.G., Fourcade H.M., Vanjani R.G., and Boore J.L. The mitochondrial genome of Paraspadella gotoi is highly reduced and reveals that chaetognaths are a sister group to protostomes. Proc. Natl. Acad. Sci. U. S. A. 101 (2004) 10639-10643
    • (2004) Proc. Natl. Acad. Sci. U. S. A. , vol.101 , pp. 10639-10643
    • Helfenbein, K.G.1    Fourcade, H.M.2    Vanjani, R.G.3    Boore, J.L.4
  • 27
    • 37249017533 scopus 로고    scopus 로고
    • Multigene analysis of lophophorate and chaetognath phylogenetic relationships
    • Helmkampf M., Bruchhaus I., and Hausdorf B. Multigene analysis of lophophorate and chaetognath phylogenetic relationships. Mol. Phylogenet. Evol. 46 (2007) 206-214
    • (2007) Mol. Phylogenet. Evol. , vol.46 , pp. 206-214
    • Helmkampf, M.1    Bruchhaus, I.2    Hausdorf, B.3
  • 28
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES: Bayesian inference of phylogenetic trees
    • Huelsenbeck J.P., and Ronquist F. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17 (2001) 754-755
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 30
    • 36448991500 scopus 로고    scopus 로고
    • Clustal W and Clustal X version 2.0
    • Larkin M.A., et al. Clustal W and Clustal X version 2.0. Bioinformatics 23 (2007) 2947-2948
    • (2007) Bioinformatics , vol.23 , pp. 2947-2948
    • Larkin, M.A.1
  • 31
    • 0030854739 scopus 로고    scopus 로고
    • tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence
    • Lowe T.M., and Eddy S.R. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25 (1997) 955-964
    • (1997) Nucleic Acids Res. , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 33
    • 0036184428 scopus 로고    scopus 로고
    • Testing the new animal phylogeny: first use of combined large-subunit and small-subunit rRNA gene sequences to classify the protostomes
    • Mallatt J., and Winchell C.J. Testing the new animal phylogeny: first use of combined large-subunit and small-subunit rRNA gene sequences to classify the protostomes. Mol. Biol. Evol. 19 (2002) 289-301
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 289-301
    • Mallatt, J.1    Winchell, C.J.2
  • 34
    • 0001772782 scopus 로고
    • Animal phylogeny in the light of the trochaea theory
    • Nielsen C. Animal phylogeny in the light of the trochaea theory. Biol. J. Linn. Soc. 25 (1985) 243-299
    • (1985) Biol. J. Linn. Soc. , vol.25 , pp. 243-299
    • Nielsen, C.1
  • 35
    • 0000404758 scopus 로고
    • Structure and function of metazoan ciliary bands and their phylogenetic significance
    • Nielsen C. Structure and function of metazoan ciliary bands and their phylogenetic significance. Acta Zool. 68 (1987) 205-262
    • (1987) Acta Zool. , vol.68 , pp. 205-262
    • Nielsen, C.1
  • 37
    • 0036625764 scopus 로고    scopus 로고
    • The phylogenetic position of Entoprocta, Ectoprocta, Phoronida, and Brachiopoda
    • Nielsen C. The phylogenetic position of Entoprocta, Ectoprocta, Phoronida, and Brachiopoda. Integ. Comp. Biol. 42 (2002) 685-691
    • (2002) Integ. Comp. Biol. , vol.42 , pp. 685-691
    • Nielsen, C.1
  • 40
    • 3242713476 scopus 로고    scopus 로고
    • Evidence from Hox genes that bryozoans are lophotrochozoans
    • Passamaneck Y.J., and Halanych K.M. Evidence from Hox genes that bryozoans are lophotrochozoans. Evol. Dev. 6 (2004) 275-281
    • (2004) Evol. Dev. , vol.6 , pp. 275-281
    • Passamaneck, Y.J.1    Halanych, K.M.2
  • 41
    • 0034945410 scopus 로고    scopus 로고
    • Animal phylogeny and the ancestry of bilaterians: inferences from morphology and 18S rDNA gene sequences
    • Peterson K.J., and Eernisse D.J. Animal phylogeny and the ancestry of bilaterians: inferences from morphology and 18S rDNA gene sequences. Evol. Dev. 3 (2001) 170-205
    • (2001) Evol. Dev. , vol.3 , pp. 170-205
    • Peterson, K.J.1    Eernisse, D.J.2
  • 42
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F., and Huelsenbeck J.P. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19 (2003) 1572-1574
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 44
    • 0033595767 scopus 로고    scopus 로고
    • Analysis of the complete mitochondrial DNA sequence of the brachiopod Terebratulina retusa places Brachiopoda within the protostomes
    • Stechmann A., and Schlegel M. Analysis of the complete mitochondrial DNA sequence of the brachiopod Terebratulina retusa places Brachiopoda within the protostomes. Proc. R. Soc. London Ser. B 266 (1999) 2043-2052
    • (1999) Proc. R. Soc. London Ser. B , vol.266 , pp. 2043-2052
    • Stechmann, A.1    Schlegel, M.2
  • 45
    • 0027175482 scopus 로고
    • The phylogenetic affinities of the chaetognaths: a molecular analysis
    • Telford M.J., and Holland P.W.H. The phylogenetic affinities of the chaetognaths: a molecular analysis. Mol. Biol. Evol. 10 (1993) 660-676
    • (1993) Mol. Biol. Evol. , vol.10 , pp. 660-676
    • Telford, M.J.1    Holland, P.W.H.2
  • 46
    • 33745180188 scopus 로고    scopus 로고
    • The complete mitochondrial genome of Flustrellidra hispida and the phylogenetic position of Bryozoa among the Metazoa
    • Waeschenbach A.M., Telford M.J., Porter J.S., and Littlewood D.T.J. The complete mitochondrial genome of Flustrellidra hispida and the phylogenetic position of Bryozoa among the Metazoa. Mol. Phylogenet. Evol. 40 (2006) 195-207
    • (2006) Mol. Phylogenet. Evol. , vol.40 , pp. 195-207
    • Waeschenbach, A.M.1    Telford, M.J.2    Porter, J.S.3    Littlewood, D.T.J.4
  • 48
    • 10244240599 scopus 로고    scopus 로고
    • Automatic annotation of organellar genomes with DOGMA
    • Wyman S.K., Jansen R.K., and Boore J.L. Automatic annotation of organellar genomes with DOGMA. Bioinformatics 20 (2004) 3252-3255
    • (2004) Bioinformatics , vol.20 , pp. 3252-3255
    • Wyman, S.K.1    Jansen, R.K.2    Boore, J.L.3
  • 49
    • 0001284561 scopus 로고    scopus 로고
    • Phylogeny of the Metazoa based on morphological and 18S ribosomal DNA evidence
    • Zrzavy J., Mihulka S., Kepka P., Bezdek A., and Tiez D. Phylogeny of the Metazoa based on morphological and 18S ribosomal DNA evidence. Cladistics 14 (1998) 249-285
    • (1998) Cladistics , vol.14 , pp. 249-285
    • Zrzavy, J.1    Mihulka, S.2    Kepka, P.3    Bezdek, A.4    Tiez, D.5


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