-
1
-
-
14544289241
-
Accounting for uncertainty in the tree topology has little effect on the decision theoretic approach to model selection in phylogeny estimation
-
Abdo Z., Minin V., Joyce P., and Sullivan J. Accounting for uncertainty in the tree topology has little effect on the decision theoretic approach to model selection in phylogeny estimation. Mol. Biol. Evol. 22 (2005) 691-703
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 691-703
-
-
Abdo, Z.1
Minin, V.2
Joyce, P.3
Sullivan, J.4
-
2
-
-
29244471198
-
Um novo gênero e duas novas espécies de Geckonideos e uma nova raça de Amphisbenideo, procedentes do Brasil Central
-
Amaral A.D. Um novo gênero e duas novas espécies de Geckonideos e uma nova raça de Amphisbenideo, procedentes do Brasil Central. Mem. Inst. Butantan (São Paulo) 9 (1935) 253-256
-
(1935)
Mem. Inst. Butantan (São Paulo)
, vol.9
, pp. 253-256
-
-
Amaral, A.D.1
-
3
-
-
9944255059
-
Partitioned Bayesian analyses, partition choice, and the phylogenetic relationships of scincid lizards
-
Brandley M.C., Schmitz A., and Reeder T.W. Partitioned Bayesian analyses, partition choice, and the phylogenetic relationships of scincid lizards. Syst. Biol. 54 (2005) 373-390
-
(2005)
Syst. Biol.
, vol.54
, pp. 373-390
-
-
Brandley, M.C.1
Schmitz, A.2
Reeder, T.W.3
-
4
-
-
56349137435
-
Nova espécie de Bronia Gray 1845, do estado do Tocantis, Brasil (Squamata, Amphisbaenidae)
-
Castro-Mello C. Nova espécie de Bronia Gray 1845, do estado do Tocantis, Brasil (Squamata, Amphisbaenidae). Pap. Avulsos Zool. (São Paulo) 43 (2003) 139-143
-
(2003)
Pap. Avulsos Zool. (São Paulo)
, vol.43
, pp. 139-143
-
-
Castro-Mello, C.1
-
6
-
-
0002503798
-
Phylogenetic relationships within Squamata
-
Estes R., and Pregill G.K. (Eds), Stanford University Press, Stanford California
-
Estes R., de Queiroz K., and Gauthier J. Phylogenetic relationships within Squamata. In: Estes R., and Pregill G.K. (Eds). Phylogenetic Relationships of the Lizard Families. Essays Commemorating Charles L. Camp (1988), Stanford University Press, Stanford California 119-282
-
(1988)
Phylogenetic Relationships of the Lizard Families. Essays Commemorating Charles L. Camp
, pp. 119-282
-
-
Estes, R.1
de Queiroz, K.2
Gauthier, J.3
-
7
-
-
0000461280
-
Confidence limits on phylogenies: an approach using the bootstrap
-
Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39 (1985) 783-791
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
8
-
-
29244432065
-
Redescription of three monotypic genera of amphisbaenians from South America: Aulura Barbour Bronia Gray and Mesobaena Mertens
-
Gans C. Redescription of three monotypic genera of amphisbaenians from South America: Aulura Barbour Bronia Gray and Mesobaena Mertens. Am. Mus. Novitates 2475 (1971) 1-32
-
(1971)
Am. Mus. Novitates
, vol.2475
, pp. 1-32
-
-
Gans, C.1
-
10
-
-
84985409653
-
The characteristics and affinities of the Amphisbaenia
-
Gans, C., 1978. The characteristics and affinities of the Amphisbaenia. Trans. Amer. Phil. Soc. 34, 347-416.
-
(1978)
Trans. Amer. Phil. Soc
, vol.34
, pp. 347-416
-
-
Gans, C.1
-
11
-
-
0141464119
-
Patterns in Amphisbaenian biogegraphy: a preliminary analysis
-
Peters G., and Hutteter R. (Eds), Museum Alexander Koenig, Bonn
-
Gans C. Patterns in Amphisbaenian biogegraphy: a preliminary analysis. In: Peters G., and Hutteter R. (Eds). Vertebrates in the Tropics (1990), Museum Alexander Koenig, Bonn 133-143
-
(1990)
Vertebrates in the Tropics
, pp. 133-143
-
-
Gans, C.1
-
12
-
-
29244442300
-
Checklist and bibliography of the Amphisbaenia of the world
-
Gans C. Checklist and bibliography of the Amphisbaenia of the world. Nature 289 (2005) 1-130
-
(2005)
Nature
, vol.289
, pp. 1-130
-
-
Gans, C.1
-
13
-
-
0030254705
-
Re: Molecules and morphology in amniote phylogeny
-
Hedges S.B., and Maxson L.R. Re: Molecules and morphology in amniote phylogeny. Mol. Phylogenet. Evol. 6 (1996) 312-314
-
(1996)
Mol. Phylogenet. Evol.
, vol.6
, pp. 312-314
-
-
Hedges, S.B.1
Maxson, L.R.2
-
14
-
-
0034849408
-
MrBayes: Bayesian inference of phylogeny
-
Huelsenbeck J.P., and Ronquist F. MrBayes: Bayesian inference of phylogeny. Bioinformatics 17 (2001) 754-755
-
(2001)
Bioinformatics
, vol.17
, pp. 754-755
-
-
Huelsenbeck, J.P.1
Ronquist, F.2
-
15
-
-
0036005522
-
Geographic origin of human mitochondrial DNA: accommodating phylogenetic uncertainty and model comparison
-
Huelsenbeck J.P., and Imennov N.S. Geographic origin of human mitochondrial DNA: accommodating phylogenetic uncertainty and model comparison. Syst. Biol. 51 (2002) 155-165
-
(2002)
Syst. Biol.
, vol.51
, pp. 155-165
-
-
Huelsenbeck, J.P.1
Imennov, N.S.2
-
16
-
-
33846432342
-
Some tests of significance, treated by theory of probability
-
Jeffreys H. Some tests of significance, treated by theory of probability. Proc. Camb. Philos. Soc. 31 (1935) 203-222
-
(1935)
Proc. Camb. Philos. Soc.
, vol.31
, pp. 203-222
-
-
Jeffreys, H.1
-
17
-
-
0003414592
-
-
Oxford University Press, Oxford 470 pp
-
Jeffreys H. Theory of Probability (1961), Oxford University Press, Oxford 470 pp
-
(1961)
Theory of Probability
-
-
Jeffreys, H.1
-
18
-
-
0141571538
-
Systematics of the Amphisbaenia (Lepidosauria:Squamata) based on morphological evidence from recent and fossil forms
-
Kearney M. Systematics of the Amphisbaenia (Lepidosauria:Squamata) based on morphological evidence from recent and fossil forms. Herpetol. Monogr. 17 (2003) 1-74
-
(2003)
Herpetol. Monogr.
, vol.17
, pp. 1-74
-
-
Kearney, M.1
-
19
-
-
4243115072
-
Repeated evolution of limblessness and digging heads in worm lizards revealed by DNA from old bones
-
Kearney M., and Stuart B.L. Repeated evolution of limblessness and digging heads in worm lizards revealed by DNA from old bones. Proc. Roy. Soc. Lond. (B). Biol. Sci. 271 (2004) 1677-1683
-
(2004)
Proc. Roy. Soc. Lond. (B). Biol. Sci.
, vol.271
, pp. 1677-1683
-
-
Kearney, M.1
Stuart, B.L.2
-
20
-
-
0030966808
-
Evolutionary shifts in three major structural features of the mitochondrial genome among iguanian lizards
-
Macey J.R., Larson A., Ananjeva N.B., and Papenfuss T.J. Evolutionary shifts in three major structural features of the mitochondrial genome among iguanian lizards. J. Mol. Evol. 44 (1997) 660-674
-
(1997)
J. Mol. Evol.
, vol.44
, pp. 660-674
-
-
Macey, J.R.1
Larson, A.2
Ananjeva, N.B.3
Papenfuss, T.J.4
-
21
-
-
4344579582
-
Phylogenetic relationships among amphisbaenian reptiles based on complete mitochondrial genome sequences
-
Macey J.R., Papenfuss T.J., Kuel J.V., Fourcade H.M., and Boore J.L. Phylogenetic relationships among amphisbaenian reptiles based on complete mitochondrial genome sequences. Molec. Phylogenet. Evol. 33 (2004) 22-31
-
(2004)
Molec. Phylogenet. Evol.
, vol.33
, pp. 22-31
-
-
Macey, J.R.1
Papenfuss, T.J.2
Kuel, J.V.3
Fourcade, H.M.4
Boore, J.L.5
-
23
-
-
67349114280
-
-
Maddison, W.P, Maddison, D.R, 2005. Mesquite: a modular system for evolutionary analysis. Version 1.06. Program distributed by the authors
-
Maddison, W.P., Maddison, D.R., 2005. Mesquite: a modular system for evolutionary analysis. Version 1.06. Program distributed by the authors. (http://www.mesquiteproject.org/mesquite/mesquite.html).
-
-
-
-
24
-
-
38449093214
-
Phylogenetic systematics and biogeography of hummingbirds: Bayesian and maximum likelihood analyses of partitioned data and selection of an appropriate partitioning strategy
-
McGuire J.J., Witt C.C., Altshuler D.L., and Remsen Jr. J.V. Phylogenetic systematics and biogeography of hummingbirds: Bayesian and maximum likelihood analyses of partitioned data and selection of an appropriate partitioning strategy. Syst. Biol. 56 (2007) 837-856
-
(2007)
Syst. Biol.
, vol.56
, pp. 837-856
-
-
McGuire, J.J.1
Witt, C.C.2
Altshuler, D.L.3
Remsen Jr., J.V.4
-
25
-
-
0242487488
-
Performance-based selection of likelihood models for phylogeny estimation
-
Minin V., Abdo Z., Joyce P., and Sullivan J. Performance-based selection of likelihood models for phylogeny estimation. Syst. Biol. 52 (2003) 674-683
-
(2003)
Syst. Biol.
, vol.52
, pp. 674-683
-
-
Minin, V.1
Abdo, Z.2
Joyce, P.3
Sullivan, J.4
-
26
-
-
0000058501
-
Inferring phylogenies from mtDNA variation: mitochondrial-gene trees versus nuclear-gene trees
-
Moore W.S. Inferring phylogenies from mtDNA variation: mitochondrial-gene trees versus nuclear-gene trees. Evolution 49 (1995) 718-726
-
(1995)
Evolution
, vol.49
, pp. 718-726
-
-
Moore, W.S.1
-
27
-
-
67349170494
-
Reptilia, Squamata, Amphisbaenidae, Anops bilabialatus: Distribution extension, meristic data, and conservation
-
Mott T., Morais D.H., and Kawashita-Ribeiro R.A. Reptilia, Squamata, Amphisbaenidae, Anops bilabialatus: Distribution extension, meristic data, and conservation. Chek List 4 (2008) 146-150
-
(2008)
Chek List
, vol.4
, pp. 146-150
-
-
Mott, T.1
Morais, D.H.2
Kawashita-Ribeiro, R.A.3
-
28
-
-
4644320044
-
Morphological homoplasy, life history evolution, and historical biogeography of plethodontid salamanders inferred from complete mitochondrial genomes
-
Mueller R.L., Macey J.R., Jaekel M., Wake D.B., and Boore J.L. Morphological homoplasy, life history evolution, and historical biogeography of plethodontid salamanders inferred from complete mitochondrial genomes. Proc. Natl. Acad. Sci. USA 101 (2004) 13820-13825
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 13820-13825
-
-
Mueller, R.L.1
Macey, J.R.2
Jaekel, M.3
Wake, D.B.4
Boore, J.L.5
-
29
-
-
33745861739
-
Dispersal and vicariance: The complex evolutionary history of boid snakes
-
Noonan B.P., and Chippindale P.T. Dispersal and vicariance: The complex evolutionary history of boid snakes. Molec. Phylogenet. Evol. 40 (2006) 347-358
-
(2006)
Molec. Phylogenet. Evol.
, vol.40
, pp. 347-358
-
-
Noonan, B.P.1
Chippindale, P.T.2
-
30
-
-
2942626695
-
MrModeltest. Version1.0b. Program distributed by the author
-
Nylander, J.A.A., 2002. MrModeltest. Version1.0b. Program distributed by the author (http://www.ebc.uu.se/systzoo/staff/nylander.html).
-
(2002)
-
-
Nylander, J.A.A.1
-
31
-
-
39149141072
-
AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics
-
Nylander J.A.A., Wilgenbush J.C., Warren D.L., and Swofford D.L. AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics. Bioinformatics 24 (2008) 581-583
-
(2008)
Bioinformatics
, vol.24
, pp. 581-583
-
-
Nylander, J.A.A.1
Wilgenbush, J.C.2
Warren, D.L.3
Swofford, D.L.4
-
32
-
-
4243140058
-
A phylogenetic mixture model for detecting pattern-heterogenity in gene-sequence or character-state data
-
Pagel M., and Meade A. A phylogenetic mixture model for detecting pattern-heterogenity in gene-sequence or character-state data. Syst. Biol. 53 (2004) 571-581
-
(2004)
Syst. Biol.
, vol.53
, pp. 571-581
-
-
Pagel, M.1
Meade, A.2
-
33
-
-
0001829453
-
-
Hillis D.M., Moritz C., and Mable B.K. (Eds), Molecular systematics, Sinauer Associates, Sunderland
-
Palumbi S.R. Nucleic acids II: the polymerase chain reaction. In: Hillis D.M., Moritz C., and Mable B.K. (Eds) (1996), Molecular systematics, Sinauer Associates, Sunderland 205-247
-
(1996)
Nucleic acids II: the polymerase chain reaction
, pp. 205-247
-
-
Palumbi, S.R.1
-
34
-
-
0031773680
-
MODELTEST: testing the model of DNA substitution
-
Posada D., and Crandall K.A. MODELTEST: testing the model of DNA substitution. Bioinformatics 14 (1998) 817-818
-
(1998)
Bioinformatics
, vol.14
, pp. 817-818
-
-
Posada, D.1
Crandall, K.A.2
-
35
-
-
0034885617
-
Combining mitochondrial DNA sequences and morphological data to infer species boundaries: phylogeography of lanceheaded pitvipers in the Brazilian Atlantic forest, and the status of Bothrops pradoi (Squamata: Serpentes: Viperidae)
-
Puorto G., Da Graça Salomão M., Theakston R.D.G., Thorpe R.S., Warrell D.A., and Wüster W. Combining mitochondrial DNA sequences and morphological data to infer species boundaries: phylogeography of lanceheaded pitvipers in the Brazilian Atlantic forest, and the status of Bothrops pradoi (Squamata: Serpentes: Viperidae). J. Evol. Biol. 14 (2001) 527-538
-
(2001)
J. Evol. Biol.
, vol.14
, pp. 527-538
-
-
Puorto, G.1
Da Graça Salomão, M.2
Theakston, R.D.G.3
Thorpe, R.S.4
Warrell, D.A.5
Wüster, W.6
-
36
-
-
0000783674
-
Hypothesis testing and model selection
-
Gilks W.R., Richardson S., and Spiegelhalter D.J. (Eds), Chapman and Hall, New York, USA
-
Raftery A. Hypothesis testing and model selection. In: Gilks W.R., Richardson S., and Spiegelhalter D.J. (Eds). Markov Chain Monte Carlo in Practice (1996), Chapman and Hall, New York, USA 163-187
-
(1996)
Markov Chain Monte Carlo in Practice
, pp. 163-187
-
-
Raftery, A.1
-
37
-
-
0032766857
-
Multiple comparisons of log-likelihoods with applications to phylogenetic inference
-
Shimodaira H., and Hasegawa M. Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Mol. Biol. Evol. 16 (1999) 1114-1116
-
(1999)
Mol. Biol. Evol.
, vol.16
, pp. 1114-1116
-
-
Shimodaira, H.1
Hasegawa, M.2
-
38
-
-
28644437950
-
Replicate patterns of species richness, historical biogeography, and phylogeny in Holarctic treefrogs
-
Smith S.A., Stephens P.R., and Wiens J.J. Replicate patterns of species richness, historical biogeography, and phylogeny in Holarctic treefrogs. Evolution 59 (2005) 2433-2450
-
(2005)
Evolution
, vol.59
, pp. 2433-2450
-
-
Smith, S.A.1
Stephens, P.R.2
Wiens, J.J.3
-
39
-
-
0035142366
-
Mitochondrial versus nuclear gene sequences in deep-level mammalian phylogeny reconstruction
-
Springer M.S., DeBry R.W., Douaby C., Amrine H.M., Madsen O., de Jong W.W., and Stanhope M.J. Mitochondrial versus nuclear gene sequences in deep-level mammalian phylogeny reconstruction. Mol. Biol. Evol. 18 (2001) 132-143
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 132-143
-
-
Springer, M.S.1
DeBry, R.W.2
Douaby, C.3
Amrine, H.M.4
Madsen, O.5
de Jong, W.W.6
Stanhope, M.J.7
-
40
-
-
33750403801
-
Raxml-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
-
Stamatakis A. Raxml-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22 (2006) 2688-2690
-
(2006)
Bioinformatics
, vol.22
, pp. 2688-2690
-
-
Stamatakis, A.1
-
41
-
-
29244452051
-
Two new species of Cercolophia Vanzolini 1992 from the state of Mato Grosso, western Brazil (Reptilia, Amphisbaenia, Amphisbaenidae)
-
Strüssmann C., and de Carvalho M.A. Two new species of Cercolophia Vanzolini 1992 from the state of Mato Grosso, western Brazil (Reptilia, Amphisbaenia, Amphisbaenidae). Boll. Mus. Re.g. Sci. Nat. (Torino) 18 (2001) 487-505
-
(2001)
Boll. Mus. Re.g. Sci. Nat. (Torino)
, vol.18
, pp. 487-505
-
-
Strüssmann, C.1
de Carvalho, M.A.2
-
44
-
-
0021084212
-
Phylogenetic inference from restriction endonuclease cleavage site maps with particular reference to the evolution of humans and the apes
-
Templeton A.R. Phylogenetic inference from restriction endonuclease cleavage site maps with particular reference to the evolution of humans and the apes. Evolution 37 (1983) 221-244
-
(1983)
Evolution
, vol.37
, pp. 221-244
-
-
Templeton, A.R.1
-
45
-
-
9644269182
-
Molecular phylogenetics of Squamata: The position of snakes, amphisbaenians, and dibamids, and the root of the squamate tree
-
Townsend T.M., Larson A., Louis E., and Macey J.R. Molecular phylogenetics of Squamata: The position of snakes, amphisbaenians, and dibamids, and the root of the squamate tree. Syst. Biol. 53 (2004) 735-757
-
(2004)
Syst. Biol.
, vol.53
, pp. 735-757
-
-
Townsend, T.M.1
Larson, A.2
Louis, E.3
Macey, J.R.4
-
46
-
-
0141799002
-
A systematic arrangement of the family Amphisbaenidae (Sauria)
-
Vanzolini P.E. A systematic arrangement of the family Amphisbaenidae (Sauria). Herpetologica 7 (1951) 113-123
-
(1951)
Herpetologica
, vol.7
, pp. 113-123
-
-
Vanzolini, P.E.1
-
47
-
-
29244452293
-
New Amphisbaenidae from Brasil (Sauria)
-
Vanzolini P.E. New Amphisbaenidae from Brasil (Sauria). Pap. Avulsos Zool. (São Paulo) 24 (1971) 191-195
-
(1971)
Pap. Avulsos Zool. (São Paulo)
, vol.24
, pp. 191-195
-
-
Vanzolini, P.E.1
-
48
-
-
0345108731
-
Cercolophia, a new genus for the species of Amphisbaena with a terminal vertical keel on the tail (Reptilia, Amphisbaenia)
-
Vanzolini P.E. Cercolophia, a new genus for the species of Amphisbaena with a terminal vertical keel on the tail (Reptilia, Amphisbaenia). Pap. Avulsos Zool. (São Paulo) 37 (1992) 401-412
-
(1992)
Pap. Avulsos Zool. (São Paulo)
, vol.37
, pp. 401-412
-
-
Vanzolini, P.E.1
-
49
-
-
40949150808
-
Origin of tropical American burrowing reptiles by transatlantic rafting
-
Vidal N., Azvolinsky A., Cruaud C., and Hedges S.H. Origin of tropical American burrowing reptiles by transatlantic rafting. Biol. Lett. 4 (2008) 115-118
-
(2008)
Biol. Lett.
, vol.4
, pp. 115-118
-
-
Vidal, N.1
Azvolinsky, A.2
Cruaud, C.3
Hedges, S.H.4
-
50
-
-
38049152843
-
Rapid diversification and dispersal during global warming periods by plethodontid salamanders
-
Vieites D.R., Min M.S., and Wake D. Rapid diversification and dispersal during global warming periods by plethodontid salamanders. Proc. Natl. Acad. Sci. USA 104 (2007) 19903-19907
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 19903-19907
-
-
Vieites, D.R.1
Min, M.S.2
Wake, D.3
-
51
-
-
0034848170
-
DAMBE: Data analysis in molecular biology and evolution
-
Xia X., and Xie Z. DAMBE: Data analysis in molecular biology and evolution. J. Hered. 92 (2001) 371-373
-
(2001)
J. Hered.
, vol.92
, pp. 371-373
-
-
Xia, X.1
Xie, Z.2
-
52
-
-
0029834015
-
Phylogenetic performance of mitochondrial protein-coding genes in resolving relationships among vertebrates
-
Zardoya R., and Meyer A. Phylogenetic performance of mitochondrial protein-coding genes in resolving relationships among vertebrates. Mol. Biol. Evol. 13 (1996) 933-942
-
(1996)
Mol. Biol. Evol.
, vol.13
, pp. 933-942
-
-
Zardoya, R.1
Meyer, A.2
-
53
-
-
0041568326
-
When are phylogenetic analyses misled by convergence? A case study in Texas cave salamanders
-
Wiens J.J., Chippindale P.T., and Hillis D.M. When are phylogenetic analyses misled by convergence? A case study in Texas cave salamanders. Syst. Biol. (2003) 501-514
-
(2003)
Syst. Biol.
, pp. 501-514
-
-
Wiens, J.J.1
Chippindale, P.T.2
Hillis, D.M.3
-
55
-
-
33646690277
-
Why does a trait evolve multiple times within a clade? Repeated evolution of snakelike body form in squamate reptiles
-
Wiens J.J., Brandley M.C., and Reeder T.W. Why does a trait evolve multiple times within a clade? Repeated evolution of snakelike body form in squamate reptiles. Evolution 60 (2006) 123-141
-
(2006)
Evolution
, vol.60
, pp. 123-141
-
-
Wiens, J.J.1
Brandley, M.C.2
Reeder, T.W.3
-
56
-
-
0344287479
-
Phylogenetic relationships and limb loss in sub-Saharan African scincine lizards (Squamata: Scincidae)
-
Whiting A.S., Bauer A.M., and Sites Jr. J.W. Phylogenetic relationships and limb loss in sub-Saharan African scincine lizards (Squamata: Scincidae). Mol. Phylogenet. Evol. 29 (2003) 582-598
-
(2003)
Mol. Phylogenet. Evol.
, vol.29
, pp. 582-598
-
-
Whiting, A.S.1
Bauer, A.M.2
Sites Jr., J.W.3
|