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Volumn 97, Issue 2, 2009, Pages 132-140

Automatic preprocessing of electrophoretic images

Author keywords

Comparative proteomics; Gel electrophoresis; Images analysis; Robust orthogonal regression; Robust regression; Significant features

Indexed keywords

ARTICLE; AUTOANALYSIS; COMPUTER PROGRAM; ELECTROPHORESIS; IMAGE PROCESSING; INFORMATION PROCESSING; MICROARRAY ANALYSIS; MULTIVARIATE ANALYSIS; PARAMETER; PRIORITY JOURNAL; PROTEOMICS; RADIATION RESPONSE; REGRESSION ANALYSIS; UNIVARIATE ANALYSIS;

EID: 67349205066     PISSN: 01697439     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.chemolab.2009.03.002     Document Type: Article
Times cited : (12)

References (41)
  • 1
    • 0035942271 scopus 로고    scopus 로고
    • Significance analysis of microarrays applied to the ionizing radiation response
    • Goss Tusher V., Tibshirani R., and Chu G. Significance analysis of microarrays applied to the ionizing radiation response. P. Natl. Acad. Sci. U. S. A. 98 (2001) 5116-5121
    • (2001) P. Natl. Acad. Sci. U. S. A. , vol.98 , pp. 5116-5121
    • Goss Tusher, V.1    Tibshirani, R.2    Chu, G.3
  • 2
    • 29244449816 scopus 로고    scopus 로고
    • Software-induced variance in two-dimensional gel electrophoresis image analysis
    • Wheelock A.W., and Buckpitt A.R. Software-induced variance in two-dimensional gel electrophoresis image analysis. Electrophoresis 26 (2005) 4508-4520
    • (2005) Electrophoresis , vol.26 , pp. 4508-4520
    • Wheelock, A.W.1    Buckpitt, A.R.2
  • 4
    • 33845446814 scopus 로고    scopus 로고
    • Challenges related to analysis of protein spot volumes from two-dimensional gel electrophoresis as revealed by replicate gels
    • Grove H., Hollung K., Uhlen A.K., Martens H., and Færgestad E.M. Challenges related to analysis of protein spot volumes from two-dimensional gel electrophoresis as revealed by replicate gels. J. Proteome Res. 5 (2006) 3399-3410
    • (2006) J. Proteome Res. , vol.5 , pp. 3399-3410
    • Grove, H.1    Hollung, K.2    Uhlen, A.K.3    Martens, H.4    Færgestad, E.M.5
  • 8
  • 11
    • 0043021954 scopus 로고    scopus 로고
    • Comparison of image transformations methods used in matching of 2D gel electrophoresis images
    • Kaczmarek K., Walczak B., de Jong S., and Vandeginste B.G.M. Comparison of image transformations methods used in matching of 2D gel electrophoresis images. Acta Chromatogr. 13 (2003) 7-21
    • (2003) Acta Chromatogr. , vol.13 , pp. 7-21
    • Kaczmarek, K.1    Walczak, B.2    de Jong, S.3    Vandeginste, B.G.M.4
  • 13
    • 24644494711 scopus 로고    scopus 로고
    • Fast and compact smoothing on large multidimensional grids
    • Eilers P.H.C., Currie I.D., and Durban M. Fast and compact smoothing on large multidimensional grids. Comput. Stat. Data Anal. 50 (2006) 61-76
    • (2006) Comput. Stat. Data Anal. , vol.50 , pp. 61-76
    • Eilers, P.H.C.1    Currie, I.D.2    Durban, M.3
  • 14
    • 0020588514 scopus 로고
    • Biomedical image processing
    • Sternberg S.R. Biomedical image processing. IEEE Computer 16 (1983) 22-34
    • (1983) IEEE Computer , vol.16 , pp. 22-34
    • Sternberg, S.R.1
  • 16
    • 0020036324 scopus 로고
    • Some extensions to the GELLAB 2D electrophoresis gel analysis system
    • Lemkin P.F., Lipkin L.E., and Lester E.P. Some extensions to the GELLAB 2D electrophoresis gel analysis system. Clin. Chem. 28 (1982) 840-849
    • (1982) Clin. Chem. , vol.28 , pp. 840-849
    • Lemkin, P.F.1    Lipkin, L.E.2    Lester, E.P.3
  • 17
    • 0024978195 scopus 로고
    • The QUEST system for quantitative analysis of two-dimensional gels
    • Garrels J.I. The QUEST system for quantitative analysis of two-dimensional gels. J. Biol. Chem. 264 (1989) 5269-5282
    • (1989) J. Biol. Chem. , vol.264 , pp. 5269-5282
    • Garrels, J.I.1
  • 18
    • 0030898046 scopus 로고    scopus 로고
    • Comparing two-dimensional gels across the Internet
    • Lemkin P.F. Comparing two-dimensional gels across the Internet. Electrophoresis 18 (1997) 461-470
    • (1997) Electrophoresis , vol.18 , pp. 461-470
    • Lemkin, P.F.1
  • 19
    • 0031445948 scopus 로고    scopus 로고
    • Melanie II - a third-generation software package for analysis of two-dimensional electrophoresis images: II
    • Appel R.D., Vargas J., Palagi P.M., Walter D., and Hochstrasser D.F. Melanie II - a third-generation software package for analysis of two-dimensional electrophoresis images: II. Algorithms, Electrophoresis 18 (1997) 2735-2748
    • (1997) Algorithms, Electrophoresis , vol.18 , pp. 2735-2748
    • Appel, R.D.1    Vargas, J.2    Palagi, P.M.3    Walter, D.4    Hochstrasser, D.F.5
  • 20
  • 21
    • 0000392686 scopus 로고    scopus 로고
    • An applied point pattern matching problem: comparing 2D patterns of protein spots
    • Hoffmann F., Kriegel K., and Wenk C. An applied point pattern matching problem: comparing 2D patterns of protein spots. Discrete Appl. Math. 93 (1999) 75-88
    • (1999) Discrete Appl. Math. , vol.93 , pp. 75-88
    • Hoffmann, F.1    Kriegel, K.2    Wenk, C.3
  • 22
    • 4244118122 scopus 로고    scopus 로고
    • Point pattern matching in the analysis of two-dimensional gel electropherograms
    • Pánek J., and Vohradský J. Point pattern matching in the analysis of two-dimensional gel electropherograms. Electrophoresis 20 (1997) 3484-3491
    • (1997) Electrophoresis , vol.20 , pp. 3484-3491
    • Pánek, J.1    Vohradský, J.2
  • 23
    • 0035407544 scopus 로고    scopus 로고
    • Multiresolution image registration for two-dimensional gel electrophoresis
    • Veeser S., Dunn M.J., and Yang G.-Z. Multiresolution image registration for two-dimensional gel electrophoresis. Proteomics 1 (2001) 856-870
    • (2001) Proteomics , vol.1 , pp. 856-870
    • Veeser, S.1    Dunn, M.J.2    Yang, G.-Z.3
  • 24
    • 38049131517 scopus 로고    scopus 로고
    • Automatic registration for images of two-dimensional protein gels
    • Smilansky Z. Automatic registration for images of two-dimensional protein gels. Electrophoresis 22 (2001) 1616-1626
    • (2001) Electrophoresis , vol.22 , pp. 1616-1626
    • Smilansky, Z.1
  • 25
    • 0027074420 scopus 로고
    • Analysis of 2-dimensional electrophoretic gels
    • Conradsen K., and Pedersen J. Analysis of 2-dimensional electrophoretic gels. Biometrics 48 (1992) 1273-1287
    • (1992) Biometrics , vol.48 , pp. 1273-1287
    • Conradsen, K.1    Pedersen, J.2
  • 27
    • 0020765686 scopus 로고
    • Comparison of conventional and robust regression in analysis of chemical data
    • Phillips G.R., and Eyring E.M. Comparison of conventional and robust regression in analysis of chemical data. Anal. Chem. 55 (1983) 1134-1138
    • (1983) Anal. Chem. , vol.55 , pp. 1134-1138
    • Phillips, G.R.1    Eyring, E.M.2
  • 33
    • 36549042394 scopus 로고    scopus 로고
    • Target selection for alignment of chromatographic signals obtained using monochannel detectors
    • Daszykowski M., and Walczak B. Target selection for alignment of chromatographic signals obtained using monochannel detectors. J. Chromatogr. A 1176 (2007) 1-11
    • (2007) J. Chromatogr. A , vol.1176 , pp. 1-11
    • Daszykowski, M.1    Walczak, B.2
  • 35
    • 36649002868 scopus 로고    scopus 로고
    • Bootstrap method for the estimation of measurements uncertainty in spotted dual-color DNA microarrays
    • Karakach T.K., Flight R.M., and Wentzell P.D. Bootstrap method for the estimation of measurements uncertainty in spotted dual-color DNA microarrays. Anal. Bioanal. Chem. 389 (2007) 2125-2141
    • (2007) Anal. Bioanal. Chem. , vol.389 , pp. 2125-2141
    • Karakach, T.K.1    Flight, R.M.2    Wentzell, P.D.3
  • 36
    • 0028820823 scopus 로고
    • Related versions of the multiplicative scatter correction method for preprocessing spectroscopic data
    • Helland I.S., Næs T., and Isaksson T. Related versions of the multiplicative scatter correction method for preprocessing spectroscopic data. Chemom. Intel. Lab. Syst. 29 (1995) 233-241
    • (1995) Chemom. Intel. Lab. Syst. , vol.29 , pp. 233-241
    • Helland, I.S.1    Næs, T.2    Isaksson, T.3
  • 37
    • 0022059848 scopus 로고
    • Linearization and scatter-correction for near-infrared reflectance spectra of meat
    • Geladi P., MacDougall D., and Martens H. Linearization and scatter-correction for near-infrared reflectance spectra of meat. Appl. Spectrosc. 39 (1985) 491-500
    • (1985) Appl. Spectrosc. , vol.39 , pp. 491-500
    • Geladi, P.1    MacDougall, D.2    Martens, H.3
  • 38
    • 0024069289 scopus 로고
    • The effect of multiplicative scatter correction (MSC) and linearity improvement in NIR spectroscopy
    • Isaksson T., and Naes T. The effect of multiplicative scatter correction (MSC) and linearity improvement in NIR spectroscopy. Appl. Spectrosc. 42 (1988) 1273-1284
    • (1988) Appl. Spectrosc. , vol.42 , pp. 1273-1284
    • Isaksson, T.1    Naes, T.2
  • 39
    • 0024053523 scopus 로고
    • Determination of particle size in powders by scatter correction in diffuse near-infrared reflectance
    • Ilari J.L., Martens M., and Isaksson T. Determination of particle size in powders by scatter correction in diffuse near-infrared reflectance. Appl. Spectrosc. 42 (1988) 722-728
    • (1988) Appl. Spectrosc. , vol.42 , pp. 722-728
    • Ilari, J.L.1    Martens, M.2    Isaksson, T.3
  • 40
    • 44949102149 scopus 로고    scopus 로고
    • Classification of genomic data: some aspects of feature selection
    • Czekaj T., Wu W., and Walczak B. Classification of genomic data: some aspects of feature selection. Talanta 76 (2008) 564-574
    • (2008) Talanta , vol.76 , pp. 564-574
    • Czekaj, T.1    Wu, W.2    Walczak, B.3
  • 41
    • 51749125994 scopus 로고    scopus 로고
    • Cross model validation and optimisation of bilinear regression models
    • Gidskehaug L., Andersen E., and Alsberg B.K. Cross model validation and optimisation of bilinear regression models. Chemom. Intell. Lab. Syst. 93 (2008) 1-10
    • (2008) Chemom. Intell. Lab. Syst. , vol.93 , pp. 1-10
    • Gidskehaug, L.1    Andersen, E.2    Alsberg, B.K.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.