Software-induced variance in two-dimensional gel electrophoresis image analysis

Electrophoresis

Volumn 26, Issue 23, 2005, Pages 4508-4520

  Wheelock, Åsa M ^a,b   Buckpitt, Alan R ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b KYOTO UNIVERSITY   (Japan)

Author keywords

PDQuest; Phoretix 2D Expression; Proteomics; Quantitative two dimensional gel electrophoresis; Variance

Indexed keywords

ELECTROPHORESIS; MOLECULAR BIOLOGY;

ANALYSIS SOFTWARES; BACKGROUND SUBTRACTION ALGORITHMS; GEL IMAGES; PDQUE 7.2; PHORETIX 2D EXPRESSION; PROTEOMICS; QUANTITATIVE TWO-DIMENSIONAL GEL ELECTROPHORESIS; TWO-DIMENSIONAL GEL ELECTROPHORESIS; TWO-DIMENSIONAL GEL ELECTROPHORESIS IMAGES; VARIANCE;

GELS;

ALGORITHM; ARTICLE; COMPUTER ANALYSIS; COMPUTER PROGRAM; CONTROLLED STUDY; DATA ANALYSIS; IMAGE ANALYSIS; PROTEOMICS; QUANTITATIVE ANALYSIS; TWO DIMENSIONAL GEL ELECTROPHORESIS; VARIANCE;

EID: 29244449816     PISSN: 01730835     EISSN: None     Source Type: Journal    
DOI: 10.1002/elps.200500253     Document Type: Article

References (24)

1. Zuo, X., Speicher, D. W., Electrophoresis 2000, 21, 3035-3047.
2. Barry, R. C., Alsaker, B. L., Robison-Cox, J. F., Dratz, E. A., Electrophoresis 2003, 24, 3390-3404.
3. Zhou, S., Bailey, M. J., Dunn, M. J., Preedy, V. R., Emery, P. W., Proteomics 2005, 5, 2739-2747.
4. Shaw, J., Rowlinson, R., Nickson, J., Stone, T., Sweet, A., Proteomics 2003, 3, 1181-1195.
5. Tonge, R., Shaw, J., Middleton, B., Rowlinson, R., Rayner, S., Proteomics 2001, 1, 377-396.
6. Zhan, X., Desiderio, D. M., Electrophoresis 2003, 24, 1818-1833.
7. Molloy, M. P., Brzezinski, E. E., Hang, J., McDowell, M. T., VanBogelen, R. A., Proteomics 2003, 3, 1912-1919.
8. Rosengren, A. T., Salmi, J. M., Aittokallio, T., Westerholm, J., Lahesmaa, R., Proteomics 2003, 3, 1936-1946.
9. Raman, B., Cheung, A., Marten, M. R., Electrophoresis 2002, 23, 2194-2202.
10. Mahon, P., Dupree, P., Electrophoresis 2001, 22, 2075-2085.
11. Nonlinear Dynamics http://www.nonlinear.com/products/2d/evoexp/specifications.asp (2004).
12. Marengo, E., Robotti, E., Antonucci, F., Cecconi, D., Campostrini, N., Proteomics 2005, 5, 654-666.
13. Wheelock, A. M., Zhang, L., Tran, M. U., Morin, D., Penn, S., Am. J. Physiol. Lung Cell Mol. Physiol. 2004, 286, L399-L410.
14. Bradford, M. M., Anal. Biochem. 1976, 72, 248-254.
15. Rabilloud, T., Adessi, C., Giraudel, A., Lunardi, J., Electrophoresis 1997, 18, 307-316.
16. Olsson, I., Larsson, K., Palmgren, R., Bjellqvist, B., Proteomics 2002, 2, 1630-1632.
17. Bjellqvist, B., Ek, K., Righetti, P. G., Gianazza, E., Görg, A., J. Biochem. Biophys. Methods 1982, 6, 317-339.
18. Lämmli, U. K., Nature 1970, 227, 680-685.
19. Sabounchi-Schutt, F., Astrom, J., Olsson, I., Eklund, A., Grunewald, J., Electrophoresis 2000, 21, 3649-3656.
20. Wheeloc, A. M., Morin, D., Bartosiewicz, M., Buckpitt, A. R., Proteomics 2005, 5, in press.
21. Patton, W. F., Lopez, M. F., Barry, P., Skea, W. M., BioTechniques 1992, 12, 580-585.
22. Schulenberg, B., Arnold, B., Patton, W. F., Proteomics 2003, 3, 1196-1205.
23. Cutler, P., Heald, G., White, I. R., Ruan, J., Proteomics 2003, 3, 392-401.
24. Kreil, D. P., Karp, N. A., Lilley, K. S., Bioinformatics 2004, 20, 2026-2034.