Preprocessing of two-dimensional gel electrophoresis images

Proteomics

Volumn 4, Issue 8, 2004, Pages 2377-2389

  Kaczmarek, Krzysztof ^a   Walczak, Beata ^a   De Jong, Sijmen ^b   Vandeginste, Bernard G M ^b  

^a UNIVERSITY OF SILESIA   (Poland)

^b UNILEVER RESEARCH VLAARDINGEN   (Netherlands)

Author keywords

Filtering technique; Noise reduction; Wavelet transform

Indexed keywords

AUTOANALYSIS; CONFERENCE PAPER; FILTRATION; IMAGING; INFORMATION PROCESSING; MATHEMATICAL ANALYSIS; NOISE REDUCTION; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEOMICS; TWO DIMENSIONAL GEL ELECTROPHORESIS;

ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; IMAGE PROCESSING, COMPUTER-ASSISTED; MATHEMATICS; PROTEINS; PROTEOMICS;

EID: 3543105596     PISSN: 16159853     EISSN: None     Source Type: Journal    
DOI: 10.1002/pmic.200300758     Document Type: Conference Paper

References (29)

1. Westermeier, R., Electrophoresis in Practice: A Guide to Theory and Practice, VCH, Weinheim 1993.
2. WORLD-2DPAGE - 2-D PAGE databases and services at http://www.expasy.ch/ ch2d/2d-index.html.
3. NCI Flicker Database at http://www-lecb.ncifcrf.gov/2dwgDB/.
4. GelBank at http://gelbank.anl.gov.
5. Kaczmarek, K., Walczak, B., de Jong, S., Vandeginste, B. G. M., J. Chem. Inf. Comput. Sci. 2002, 42, 1431-1442.
6. Kaczmarek, K., Walczak, B., de Jong, S., Vandeginste, B. G. M., J. Chem. Inf. Comput. Sci. 2003, 43, 978-986.
7. Perrin, C., Walczak, B., Massart, D. L., Anal. Chem. 2001, 73, 4903-4917.
8. Sonka, M., Hlavac, V., Boyle, R., Image Processing, Analysis and Machine Vision, Brooks/Cole, Pacific Grove 1999.
9. Mittermayr, C. R., Nikolov, S. G., Hutter, H., Grasserbauer, M., Chemom. Intell. Lab. Syst. 1996, 34, 187-202.
10. Nikolov, S. G., Hutter, H., Grasserbauer, M., Chemom. Intell. Lab. Syst. 1996, 34, 263-273.
11. Fodor, I. K., Kamath, C., J. Electron. Imaging 2003, 12, 151-160.
12. Nounou, M. N., Bakshi, B. R., in: Walczak, B. (Ed.), Wavelets in Chemistry, Elsevier, Amsterdam 2000, pp. 119-150.
13. Donoho, D. L., Johnstone, I. M., Kerkyacharin, G., Picard, D., J. Royal Stat. Soc. B 1995, 58, 301-369.
14. Donoho, D. L., Johnstone, I. M., J. Am. Stat. Assoc. 1995, 90, 1200-1224.
15. Donoho, D. L., De-noising via Soft Thresholding, Technical Report, Department of Statistics, Stanford University, 1992.
16. Donoho, D. L., Johnstone, I. M., Biometrika 1994, 94, 425-455.
17. Donoho, D. L., International Conference on Wavelets and Applications, Toulouse, France 1992.
18. Daubechies, I., Commun. Pur. Appl. Math. 1988, 41, 909-996.
19. Mallat, S., A Wavelet Tour of Signal Processing, Academic Press, San Diego, CA 1998.
20. Hubbard, B. B., The World According to Wavelets, A K Peters, Wellesley 1998.
21. Walczak, B., Massart, D. L., Chemom. Intell. Lab. Syst. 1997, 36, 81-94.
22. Alsberg, B. K., Woodward, A. M., Kell, D. B., Chemom. Intell. Lab. Syst. 1997, 37, 215-239.
23. Mallet, Y., De Vel, O., Coomans, D., in: Walczak, B. (Ed.), Wavelets in Chemistry, Elsevier, Amsterdam 2000, pp. 57-84.
24. Mallat, S., IEEE T. Pattern Anal. 1989, 11, 674-693.
25. Stollnitz, E. J., DeRose, T., Salesin, D. H., IEEE Comput. Graph. 1995, 15, 76-84.
26. Chang, S. G., Yu, B., Vetterli, M., IEEE T. Image Process. 2000, 9, 1532-1546.
27. Kelly, S. E., Appl. Comput. Harmon. Anal. 1996, 3, 72-81.
28. Coifman, R. R., Donoho, D. L., in: Antoniadis, A., Oppenheim, G., (Eds.), Wavelets and Statistics, Lecture Notes in Statistics, Springer, New York 1995, 103, pp. 125-150.
29. Vincent, L., Soille, P., IEEE T. Pattern Anal. 1991, 13, 583-598.