Feature based fuzzy matching of 2D gel electrophoresis images

Journal of Chemical Information and Computer Sciences

Volumn 42, Issue 6, 2002, Pages 1431-1442

  Kaczmarek, K ^a   Walczak, Beata ^a   De Jong, S ^b   Vandeginste, B G M ^b  

^a UNIVERSITY OF SILESIA   (Poland)

^b UNILEVER RESEARCH VLAARDINGEN   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

COMPUTER SIMULATION; FUZZY SETS; GELS; IMAGING TECHNIQUES; MATHEMATICAL TRANSFORMATIONS; PROTEINS;

FUZZY MATCHING;

ELECTROPHORESIS;

PROTEIN;

ARTICLE; AUTOMATION; CHEMISTRY; FACTUAL DATABASE; FUZZY LOGIC; HUMAN; IMAGE PROCESSING; METHODOLOGY; MONTE CARLO METHOD; PROTEOMICS; SKIN; TWO DIMENSIONAL GEL ELECTROPHORESIS;

AUTOMATION; DATABASES, FACTUAL; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; FUZZY LOGIC; HUMANS; IMAGE PROCESSING, COMPUTER-ASSISTED; MONTE CARLO METHOD; PROTEINS; PROTEOMICS; SKIN;

EID: 0036827081     PISSN: 00952338     EISSN: None     Source Type: Journal    
DOI: 10.1021/ci020266k     Document Type: Article

References (21)

1. O'Farrell, P.O. High-resolution two-dimensional electrophoresis of proteins. J. Biol. Chem. 1975, 250, 4007-4021.
2. Westermeier, R. Electrophoresis in practice: a guide to theory and practice; VCH: Weisenheim, 1993.
3. Celis, J.E.; Gromov, P. 2D protein electrophoresis: can it be perfected? Curr. Opin. Biotechnol. 1999, 10, 16-21.
4. Harry, J.L.; Wilkins, M.R.; Herbert, B.R.; Packer, N.H.; Gooley, A.A.; Williams, K.L. Proteomics: Capacity versus utility. Electrophoresis 2000, 21, 1071-1081.
5. Quadroni, M.; James, P. Proteomics and Automation. Electrophoresis 1999, 20, 664-677.
6. Olson, A.D.; Miller, M.J. Elsie 4: Quantitative computer analysis of sets of two-dimensional gel electrophoretograms. Anal. Biochem. 1988, 169, 49-70.
7. Pleissner, K.P. The CAROL system available over the Interact, http://gelmatching.inf.fu-berlin.de/.
8. Lemkin, P.F.; Lipkin, L.E.; Lester, E.P. Some extensions to the GELLAB 2D electrophoresis gel analysis system. Clin. Chem. 1982, 28, 840-849.
9. Lemkin, P.F. Comparing two-dimensional electrophoretic gel images across the Internet. Electrophoresis 1997, 18, 461-70.
10. Lemkin, P.F.; Thornwall, G. Flicker image comparison of 2-D gel images for putative protein identyfication using the 2DWG Meta-Database. Molecular Biotechnol. 1999, 12, 159-172.
11. Monardo, P.J.; Boutell, T.; Garrels, J.I.; Latter, G.I. A distributed system for two-dimensional gel analysis. Comput. Applications Biosci. 1994, 10, 137-143.
12. Heipke, C. Overview of Image Matching Techniques. Proceedings of the OEEPE Workshop on "Application of digital photogrammetric workstations"; available from http://dgrwww.epfl.ch/PHOT/workshop/wks96/art_3_l.html.
13. Dryden, I. General shape and registration analysis. In Stochastic Geometry: Likelihood and Computation; Barndorff-Nielsen, O.E., Kendall, W.S., van Lieshout, M.N.M., Eds.; Monographs on Statistics and Applied Probability, Chapman and Hall/CRC Press: Boca Raton, 1999; Vol. 80, pp 333-364.
14. Mardia, K.V.; A review of image-warping methods. J. Appl. Statistics 1998, 25, 155-171.
15. Vandeginste, B.G.M.; Massart, D.L.; Buydens, L.M.C.; de Jong, S.; Lewi, P.J.; Smeyers-Verbeke, J. Handbook of chemometrics and qualimetrics: part B; Elsevier: Amsterdam, 1998.
16. Smilansky, Z. Automatic registration for images of two-dimensional protein gels. Electrophoresis 2001, 22, 1616-1626.
17. Veeser, S.; Dunn, M.J.; Yang, G.Z. Multiresolution image registration for two-dimensional gel electrophoresis. Proteomics 2001, 1, 856-870.
18. Huttenlocher, D.P.; Klanderman, G.A.; Rucklidge, W.J. Comparing images using the Hausdorff distance. IEEE Trans. Pattern Analysis Machine Intelligence 1993, 15, 850-863.
19. Rangarajan, A.; Chiu, H.; Bookstein, F.L. The softassign Procrustes matching algorithm. Proceedings of the 15th International Conference Information Processing in Medical Imaging. In Lecture Notes in Computer Science; Springer: Heidelberg, 1997; Vol. 1230, pp 29-42.
20. Sinkhorn, R. A relationship between arbitrary positive matrices and doubly stochastic matrices. Annals Mathematical Statistics 1996, 35, 876-879.
21. Loaded from WORLD-2DPAGE - 2-D PAGE databases and services from http://www.expasy.ch/ch2d/2d-index.html; now available over the Interact http://www.cto.us.edu.pl/~kkaczm6/obrazki.