메뉴 건너뛰기




Volumn 41, Issue 6, 2009, Pages 1324-1330

Characterization of myxomycete communities in soil by reverse transcription polymerase chain reaction (RT-PCR)-based method

Author keywords

Community composition; DGGE; Myxomycetes; RT PCR

Indexed keywords

COMMUNITY COMPOSITION; DENATURING GRADIENT GEL ELECTROPHORESIS; DGGE; FRUITING BODIES; MOLECULAR ANALYSIS; MYXOMYCETES; NATURAL HABITATS; NUCLEOTIDE SEQUENCE ANALYSIS; PCR APPROACHES; POLYMERASE CHAIN REACTIONS; REVERSE TRANSCRIPTION-POLYMERASE CHAIN REACTIONS; REVERSE TRANSCRIPTIONS; RT-PCR; SEASONAL CHANGES; SINGLE SITES; SOIL SAMPLES; STUDY SITES; TERRESTRIAL ECOSYSTEMS;

EID: 67349190574     PISSN: 00380717     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.soilbio.2009.04.001     Document Type: Article
Times cited : (18)

References (38)
  • 3
    • 2942725903 scopus 로고    scopus 로고
    • Molecular phylogeny of Amoebozoa and the evolutionary significance of the unikont Phalansterium
    • Cavalier-Smith T., Chao E.E., and Oates B. Molecular phylogeny of Amoebozoa and the evolutionary significance of the unikont Phalansterium. European Journal of Protistology 40 (2004) 21-48
    • (2004) European Journal of Protistology , vol.40 , pp. 21-48
    • Cavalier-Smith, T.1    Chao, E.E.2    Oates, B.3
  • 4
    • 0345580612 scopus 로고    scopus 로고
    • Group I twintrons: genetic elements in myxomycete and schizopyrenid amoeboflagellate ribosomal DNAs
    • Einvik C., Elde M., and Johansen S. Group I twintrons: genetic elements in myxomycete and schizopyrenid amoeboflagellate ribosomal DNAs. Journal of Biotechnology 64 (1998) 63-74
    • (1998) Journal of Biotechnology , vol.64 , pp. 63-74
    • Einvik, C.1    Elde, M.2    Johansen, S.3
  • 5
    • 0040103225 scopus 로고
    • Two-dimensional microdistribution of cellular slime molds in forest soil
    • Eisenberg R.M. Two-dimensional microdistribution of cellular slime molds in forest soil. Ecology 57 (1976) 380-384
    • (1976) Ecology , vol.57 , pp. 380-384
    • Eisenberg, R.M.1
  • 6
    • 0000507839 scopus 로고
    • The quantitative ecology of soil Mycetozoa
    • Feest A. The quantitative ecology of soil Mycetozoa. Progress in Protistology 2 (1987) 331-361
    • (1987) Progress in Protistology , vol.2 , pp. 331-361
    • Feest, A.1
  • 7
    • 0001044834 scopus 로고
    • A method for the enumeration of myxomycetes in soils and its application to a wide range of soils
    • Feest A., and Madelin M.F. A method for the enumeration of myxomycetes in soils and its application to a wide range of soils. FEMS Microbiology Ecology 31 (1985) 103-109
    • (1985) FEMS Microbiology Ecology , vol.31 , pp. 103-109
    • Feest, A.1    Madelin, M.F.2
  • 8
    • 0007383945 scopus 로고
    • Numerical abundance of myxomycetes (Myxogastrids) in soils in the West of England
    • Feest A., and Madelin M.F. Numerical abundance of myxomycetes (Myxogastrids) in soils in the West of England. FEMS Microbiology Ecology 31 (1985) 353-360
    • (1985) FEMS Microbiology Ecology , vol.31 , pp. 353-360
    • Feest, A.1    Madelin, M.F.2
  • 9
    • 0012089974 scopus 로고
    • Seasonal population changes of myxomycetes and associated organisms in four woodland soils
    • Feest A., and Madelin M.F. Seasonal population changes of myxomycetes and associated organisms in four woodland soils. FEMS Microbiology Ecology 53 (1988) 133-140
    • (1988) FEMS Microbiology Ecology , vol.53 , pp. 133-140
    • Feest, A.1    Madelin, M.F.2
  • 10
    • 0012063787 scopus 로고
    • Seasonal population changes of myxomycetes and associated organisms in five non-woodland soils, and correlations between their numbers and soil characteristics
    • Feest A., and Madelin M.F. Seasonal population changes of myxomycetes and associated organisms in five non-woodland soils, and correlations between their numbers and soil characteristics. FEMS Microbiology Ecology 53 (1988) 141-152
    • (1988) FEMS Microbiology Ecology , vol.53 , pp. 141-152
    • Feest, A.1    Madelin, M.F.2
  • 13
    • 0017119891 scopus 로고
    • Levels of RNA polymerase activities during growth, encystment and germination of Physarum polycephalum
    • Hildebrandt A., and Sauer H.W. Levels of RNA polymerase activities during growth, encystment and germination of Physarum polycephalum. Wilhelm Roux' Archives 180 (1976) 149-156
    • (1976) Wilhelm Roux' Archives , vol.180 , pp. 149-156
    • Hildebrandt, A.1    Sauer, H.W.2
  • 14
    • 0024190701 scopus 로고
    • Applications of nucleic acid hybridization in microbial ecology
    • Holben W.E., and Tiedje J.M. Applications of nucleic acid hybridization in microbial ecology. Ecology 69 (1988) 561-568
    • (1988) Ecology , vol.69 , pp. 561-568
    • Holben, W.E.1    Tiedje, J.M.2
  • 15
    • 0028174069 scopus 로고
    • The phytosociology of myxomycetes
    • Ing B. The phytosociology of myxomycetes. New Phytologist 126 (1994) 175-201
    • (1994) New Phytologist , vol.126 , pp. 175-201
    • Ing, B.1
  • 16
    • 0028161451 scopus 로고
    • Frequency of recovery of myxomycetes from soils of the northern United States
    • Kerr S.J. Frequency of recovery of myxomycetes from soils of the northern United States. Canadian Journal of Botany 72 (1994) 771-778
    • (1994) Canadian Journal of Botany , vol.72 , pp. 771-778
    • Kerr, S.J.1
  • 17
    • 33750306186 scopus 로고    scopus 로고
    • Rapid PCR-based method for detection and differentiation of Didymiaceae and Physaraceae (myxomycetes) in environmental samples
    • Kamono A., and Fukui M. Rapid PCR-based method for detection and differentiation of Didymiaceae and Physaraceae (myxomycetes) in environmental samples. Journal of Microbiological Methods 67 (2006) 496-506
    • (2006) Journal of Microbiological Methods , vol.67 , pp. 496-506
    • Kamono, A.1    Fukui, M.2
  • 19
    • 0032839952 scopus 로고    scopus 로고
    • Links between microbial population dynamics and nitrogen availability in an alpine ecosystem
    • Lipson D.A., Schmidt S.K., and Monson R.K. Links between microbial population dynamics and nitrogen availability in an alpine ecosystem. Ecology 80 (1999) 1623-1631
    • (1999) Ecology , vol.80 , pp. 1623-1631
    • Lipson, D.A.1    Schmidt, S.K.2    Monson, R.K.3
  • 20
    • 0036526758 scopus 로고    scopus 로고
    • Changes in soil microbial community structure and function in an alpine dry meadow following spring snow melt
    • Lipson D.A., Schadt C.W., and Schmidt S.K. Changes in soil microbial community structure and function in an alpine dry meadow following spring snow melt. Microbial Ecology 43 (2002) 307-314
    • (2002) Microbial Ecology , vol.43 , pp. 307-314
    • Lipson, D.A.1    Schadt, C.W.2    Schmidt, S.K.3
  • 21
    • 2442709377 scopus 로고    scopus 로고
    • Seasonal changes in an alpine soil bacterial community in the Colorado Rocky Mountains
    • Lipson D.A., and Schmidt S.K. Seasonal changes in an alpine soil bacterial community in the Colorado Rocky Mountains. Applied and Environmental Microbiology 70 (2004) 2867-2879
    • (2004) Applied and Environmental Microbiology , vol.70 , pp. 2867-2879
    • Lipson, D.A.1    Schmidt, S.K.2
  • 22
    • 0348173549 scopus 로고    scopus 로고
    • Pseudodidymium cryptomastigophorum nov. gen., nov. sp., a Hyperamoeba or a slime mould? A combined study on morphology and 18S rDNA sequence data
    • Michel R., Walochnik J., and Aspöck H. Pseudodidymium cryptomastigophorum nov. gen., nov. sp., a Hyperamoeba or a slime mould? A combined study on morphology and 18S rDNA sequence data. Acta Protozoologica 42 (2003) 331-343
    • (2003) Acta Protozoologica , vol.42 , pp. 331-343
    • Michel, R.1    Walochnik, J.2    Aspöck, H.3
  • 23
    • 0001868071 scopus 로고    scopus 로고
    • Denaturing gradient gel electrophoresis of PCR-amplified 16S rDNA. A new molecular approach to analyze the genetic diversity of mixed microbial communities
    • Akkermans A.D.L., Van Elsas J.D., and De Bruijn F.J. (Eds), Kluwer Academic Publishers, Dordrecht
    • Muyzer G., Hottenträger S., Teske A., and Wawer C. Denaturing gradient gel electrophoresis of PCR-amplified 16S rDNA. A new molecular approach to analyze the genetic diversity of mixed microbial communities. In: Akkermans A.D.L., Van Elsas J.D., and De Bruijn F.J. (Eds). Molecular Microbial Ecology Manual (1996), Kluwer Academic Publishers, Dordrecht 3.4.4.1-3.4.4.22
    • (1996) Molecular Microbial Ecology Manual
    • Muyzer, G.1    Hottenträger, S.2    Teske, A.3    Wawer, C.4
  • 24
    • 0033140436 scopus 로고    scopus 로고
    • Identification of the metabolically active members of a bacterial community in a polychlorinated biphenyl-polluted moorland soil
    • Nogales B., Moore E.R.B., Abraham W.R., and Timmis K.N. Identification of the metabolically active members of a bacterial community in a polychlorinated biphenyl-polluted moorland soil. Environmental Microbiology 1 (1999) 199-212
    • (1999) Environmental Microbiology , vol.1 , pp. 199-212
    • Nogales, B.1    Moore, E.R.B.2    Abraham, W.R.3    Timmis, K.N.4
  • 25
    • 0021155247 scopus 로고
    • Regulation of the synthesis of ribosomes and ribosomal components
    • Nomura M., Gourse R., and Baughman G. Regulation of the synthesis of ribosomes and ribosomal components. Annual Review of Biochemistry 53 (1984) 75-117
    • (1984) Annual Review of Biochemistry , vol.53 , pp. 75-117
    • Nomura, M.1    Gourse, R.2    Baughman, G.3
  • 26
    • 0001437234 scopus 로고
    • Degradation of dead microbial biomass in a marine sediment
    • Novitsky J.A. Degradation of dead microbial biomass in a marine sediment. Applied and Environmental Microbiology 52 (1986) 504-509
    • (1986) Applied and Environmental Microbiology , vol.52 , pp. 504-509
    • Novitsky, J.A.1
  • 28
    • 0029168294 scopus 로고
    • Design of polymerase chain reaction primers for amplifying nuclear ribosomal DNA from slime molds
    • Rusk S.A., Spiegel F.W., and Lee S.B. Design of polymerase chain reaction primers for amplifying nuclear ribosomal DNA from slime molds. Mycologia 87 (1995) 140-143
    • (1995) Mycologia , vol.87 , pp. 140-143
    • Rusk, S.A.1    Spiegel, F.W.2    Lee, S.B.3
  • 29
    • 34250492676 scopus 로고
    • Changes in nucleic acid and protein synthesis during starvation and spherule formation in Physarum polycephalum
    • Sauer H.W., Babcock K.L., and Rusch H.P. Changes in nucleic acid and protein synthesis during starvation and spherule formation in Physarum polycephalum. Wilhelm Roux' Archives 165 (1970) 110-124
    • (1970) Wilhelm Roux' Archives , vol.165 , pp. 110-124
    • Sauer, H.W.1    Babcock, K.L.2    Rusch, H.P.3
  • 30
    • 0041689684 scopus 로고    scopus 로고
    • Seasonal dynamics of previously unknown fungal lineages in tundra soils
    • Schadt C.W., Martin A.P., Lipson D.A., and Schmidt S.K. Seasonal dynamics of previously unknown fungal lineages in tundra soils. Science 301 (2003) 1359-1361
    • (2003) Science , vol.301 , pp. 1359-1361
    • Schadt, C.W.1    Martin, A.P.2    Lipson, D.A.3    Schmidt, S.K.4
  • 31
    • 0024921697 scopus 로고
    • Distribution and ecology of myxomycetes in temperate forests II. Patterns of occurrence on bark surface of living trees, leaf litter, and dung
    • Stephenson S.L. Distribution and ecology of myxomycetes in temperate forests II. Patterns of occurrence on bark surface of living trees, leaf litter, and dung. Mycologia 81 (1989) 608-621
    • (1989) Mycologia , vol.81 , pp. 608-621
    • Stephenson, S.L.1
  • 33
    • 0000744622 scopus 로고    scopus 로고
    • The vertical distribution of dictyostelids and myxomycetes in the soil/litter microhabitat
    • Stephenson S.L., and Landolt J.C. The vertical distribution of dictyostelids and myxomycetes in the soil/litter microhabitat. Nova Hedwigia 62 (1996) 105-117
    • (1996) Nova Hedwigia , vol.62 , pp. 105-117
    • Stephenson, S.L.1    Landolt, J.C.2
  • 34
    • 0031574072 scopus 로고    scopus 로고
    • The Clustal_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., and Higgins D.G. The Clustal_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research 25 (1997) 4876-4882
    • (1997) Nucleic Acids Research , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 36
    • 3242891284 scopus 로고    scopus 로고
    • A molecular biological approach to the phylogenetic position of the genus Hyperamoeba
    • Walochnik J., Michel R., and Aspöck H. A molecular biological approach to the phylogenetic position of the genus Hyperamoeba. The Journal of Eukaryotic Microbiology 51 (2004) 433-440
    • (2004) The Journal of Eukaryotic Microbiology , vol.51 , pp. 433-440
    • Walochnik, J.1    Michel, R.2    Aspöck, H.3
  • 37
    • 2942675265 scopus 로고    scopus 로고
    • Interactions and self-organization in the soil-microbe complex
    • Young I.M., and Crawford J.W. Interactions and self-organization in the soil-microbe complex. Science 304 (2004) 1634-1637
    • (2004) Science , vol.304 , pp. 1634-1637
    • Young, I.M.1    Crawford, J.W.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.