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Volumn 51, Issue 4, 2004, Pages 433-440

A molecular biological approach to the phylogenetic position of the genus Hyperamoeba

Author keywords

Amoebozoa; Classification; Hyperamoeba; Mycetozoa; Myxogastria

Indexed keywords

PROTOZOAL DNA; PROTOZOAL RNA; RNA 18S;

EID: 3242891284     PISSN: 10665234     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1550-7408.2004.tb00391.x     Document Type: Article
Times cited : (47)

References (39)
  • 2
    • 0037229220 scopus 로고    scopus 로고
    • A novel polyubiquitin structure in cercozoa and foraminifera: Evidence for a new eukaryotic supergroup
    • Archibald, J. M., Longet, D., Pawlowski, J. & Keeling, P. J. 2003. A novel polyubiquitin structure in cercozoa and foraminifera: evidence for a new eukaryotic supergroup. Mol. Biol. Evol., 20:62-66.
    • (2003) Mol. Biol. Evol. , vol.20 , pp. 62-66
    • Archibald, J.M.1    Longet, D.2    Pawlowski, J.3    Keeling, P.J.4
  • 3
    • 0036125091 scopus 로고    scopus 로고
    • The phylogenetic position of the pelobiont Mastigamoeba balamuthi based on sequences of rDNA and translation elongation factors EF-1alpha and EF-2
    • Arisue, N., Hashimot, T., Lee, J. A., Moore, D. V., Gordon, P., Sensen, C. W., Gaasterland, T., Hasegawa, M. & Muller, M. 2002. The phylogenetic position of the pelobiont Mastigamoeba balamuthi based on sequences of rDNA and translation elongation factors EF-1alpha and EF-2. J. Eukaryot. Microbiol., 49:1-10.
    • (2002) J. Eukaryot. Microbiol. , vol.49 , pp. 1-10
    • Arisue, N.1    Hashimot, T.2    Lee, J.A.3    Moore, D.V.4    Gordon, P.5    Sensen, C.W.6    Gaasterland, T.7    Hasegawa, M.8    Muller, M.9
  • 4
    • 0037841805 scopus 로고    scopus 로고
    • The deep roots of eukaryotes
    • Baldauf, S. L. 2003. The deep roots of eukaryotes. Science, 300:1703-1706.
    • (2003) Science , vol.300 , pp. 1703-1706
    • Baldauf, S.L.1
  • 5
    • 0030667683 scopus 로고    scopus 로고
    • Origin and evolution of the slime molds (Mycetozoa)
    • Baldauf, S. L. & Doolittle, W. F. 1997. Origin and evolution of the slime molds (Mycetozoa). Proc. Natl. Acad. Sci. USA., 94:12007-12012.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 12007-12012
    • Baldauf, S.L.1    Doolittle, W.F.2
  • 6
    • 0034602344 scopus 로고    scopus 로고
    • A kingdom-level phylogeny of eukaryotes based on combined protein data
    • Baldauf, S. L., Roger, A. J., Wenk-Siefert, I. & Doolittle, W. F. 2000. A kingdom-level phylogeny of eukaryotes based on combined protein data. Science, 290:972-977.
    • (2000) Science , vol.290 , pp. 972-977
    • Baldauf, S.L.1    Roger, A.J.2    Wenk-Siefert, I.3    Doolittle, W.F.4
  • 8
    • 0027173050 scopus 로고
    • Isolation and molecular phylogenetic analysis of actin-coding regions from Emiliania huxleyi a Prymnesiophyte alga, by reverse transcriptase and PCR methods
    • Bhattacharya, D., Stickel, S. K. & Sogin, M. L. 1993. Isolation and molecular phylogenetic analysis of actin-coding regions from Emiliania huxleyi a Prymnesiophyte alga, by reverse transcriptase and PCR methods. Mol. Biol. Evol., 10:689-703.
    • (1993) Mol. Biol. Evol. , vol.10 , pp. 689-703
    • Bhattacharya, D.1    Stickel, S.K.2    Sogin, M.L.3
  • 9
    • 0035207791 scopus 로고    scopus 로고
    • SSU rRNA-based phylogenetic position of the genera Amoeba and Chaos (Lobosea, Gymnamoebia): The origin of gymnamoebae revisited
    • Bolivar, I., Fahrni, J. F., Smirnov, A. & Pawlowski, J. 2001. SSU rRNA-based phylogenetic position of the genera Amoeba and Chaos (Lobosea, Gymnamoebia): the origin of gymnamoebae revisited. Mol. Biol. Evol., 18:2306-2314.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 2306-2314
    • Bolivar, I.1    Fahrni, J.F.2    Smirnov, A.3    Pawlowski, J.4
  • 11
    • 0037403365 scopus 로고    scopus 로고
    • Phylogeny of choanozoa, apusozoa, and other protozoa and early eukaryote megaevolution
    • Cavalier-Smith, T. & Chao, E. E. 2003. Phylogeny of choanozoa, apusozoa, and other protozoa and early eukaryote megaevolution. J. Mol. Evol., 56:540-63.
    • (2003) J. Mol. Evol. , vol.56 , pp. 540-563
    • Cavalier-Smith, T.1    Chao, E.E.2
  • 12
    • 0036269480 scopus 로고    scopus 로고
    • Analyses of RNA Polymerase II genes from free-living protists: Phylogeny, long branch attraction, and the eukaryotic big bang
    • Dacks, J. B., Marinets, A., Doolittle, W. F., Cavalier-Smith, T. & Logsdon, J.M. Jr. 2002. Analyses of RNA Polymerase II genes from free-living protists: phylogeny, long branch attraction, and the eukaryotic big bang. Mol. Biol. Evol., 19:830-840.
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 830-840
    • Dacks, J.B.1    Marinets, A.2    Doolittle, W.F.3    Cavalier-Smith, T.4    Logsdon Jr., J.M.5
  • 13
    • 0345580612 scopus 로고    scopus 로고
    • Group I twintrons: Genetic elements in myxomycete and schizopyrenid amoeboflagellate ribosomal DNAs
    • Einvik, C., Elde, M., & Johansen, S. 1998. Group I twintrons: genetic elements in myxomycete and schizopyrenid amoeboflagellate ribosomal DNAs. J. Biotechnol., 64:63-74.
    • (1998) J. Biotechnol. , vol.64 , pp. 63-74
    • Einvik, C.1    Elde, M.2    Johansen, S.3
  • 15
    • 0000122573 scopus 로고
    • PHYLIP-phylogeny inference package, vers. 3.2
    • Felsenstein, J. 1989. PHYLIP-phylogeny inference package, vers. 3.2. Cladistics, 5:164-166.
    • (1989) Cladistics , vol.5 , pp. 164-166
    • Felsenstein, J.1
  • 16
    • 0036184369 scopus 로고    scopus 로고
    • Hyaloraphidium curvatum: A linear mitochondrial genome, tRNA editing, and an evolutionary link to lower fungi
    • Forget, L., Ustinova, J., Wang, Z., Huss, V. A. & Lang, B. F. 2002. Hyaloraphidium curvatum: a linear mitochondrial genome, tRNA editing, and an evolutionary link to lower fungi. Mol. Biol. Evol., 19:310-319.
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 310-319
    • Forget, L.1    Ustinova, J.2    Wang, Z.3    Huss, V.A.4    Lang, B.F.5
  • 17
    • 0030294427 scopus 로고    scopus 로고
    • Subgenus systematics of Acanthamoeba: Four nuclear 18S rDNA sequence types
    • Gast, R. J., Ledee, D. R., Fuerst, P. A. & Byers, T. J. 1996. Subgenus systematics of Acanthamoeba: four nuclear 18S rDNA sequence types. J. Eukaryot. Microbiol., 43:498-504.
    • (1996) J. Eukaryot. Microbiol. , vol.43 , pp. 498-504
    • Gast, R.J.1    Ledee, D.R.2    Fuerst, P.A.3    Byers, T.J.4
  • 18
    • 0035080942 scopus 로고    scopus 로고
    • Distribution of free-living amoebae (FLA) during preparation and supply of drinking water
    • Hoffmann, R. & Michel R. 2001. Distribution of free-living amoebae (FLA) during preparation and supply of drinking water. Int. J. Hyg. Environ. Health, 203:215-219.
    • (2001) Int. J. Hyg. Environ. Health , vol.203 , pp. 215-219
    • Hoffmann, R.1    Michel, R.2
  • 19
    • 0001913551 scopus 로고
    • Purification of amoeba mtDNA using the UNSET procedure
    • Soldo A. T.& Lee J. J. (ed.), Allen, Lawrence, Kansas
    • Hugo, E. R., Stewart, V. J., Gast, R. J. & Byers, T. J. 1992. Purification of amoeba mtDNA using the UNSET procedure. In: Soldo A. T.& Lee J. J. (ed.), Protocols in Protozoology., Allen, Lawrence, Kansas, 7.1.
    • (1992) Protocols in Protozoology , pp. 71
    • Hugo, E.R.1    Stewart, V.J.2    Gast, R.J.3    Byers, T.J.4
  • 20
    • 0030685064 scopus 로고    scopus 로고
    • Cercomonads and their relationship to the Myxomycetes
    • Karpov, S. A. 1997. Cercomonads and their relationship to the Myxomycetes. Arch. Protistenkd., 148:297-307.
    • (1997) Arch. Protistenkd. , vol.148 , pp. 297-307
    • Karpov, S.A.1
  • 21
    • 0031576650 scopus 로고    scopus 로고
    • Ultrastructure of the colorless flagellated Hyperamoeba flagellata with special reference to the flagellar apparatus
    • Karpov, S. A. & Mylnikov, A. P. 1997. Ultrastructure of the colorless flagellated Hyperamoeba flagellata with special reference to the flagellar apparatus. Europ. J. Protistol., 33:349-355.
    • (1997) Europ. J. Protistol. , vol.33 , pp. 349-355
    • Karpov, S.A.1    Mylnikov, A.P.2
  • 22
    • 0034903594 scopus 로고    scopus 로고
    • Foraminifera and Cercozoa are related in actin phylogeny: Two orphans find a home?
    • Keeling, P. J. 2001. Foraminifera and Cercozoa are related in actin phylogeny: two orphans find a home? Mol. Biol. Evol., 18:1551-1557.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 1551-1557
    • Keeling, P.J.1
  • 23
    • 0031047389 scopus 로고    scopus 로고
    • Free-living, amphizoic and opportunistic amebas
    • Martinez, A. J. & Visvesvara, G. S. 1997. Free-living, amphizoic and opportunistic amebas. Brain. Pathol. 7:583-598.
    • (1997) Brain. Pathol. , vol.7 , pp. 583-598
    • Martinez, A.J.1    Visvesvara, G.S.2
  • 24
    • 0348173549 scopus 로고    scopus 로고
    • Pseudodidymium cryptomastigophorum nov. gen., nov. sp., a Hyperamoeba or a slime mould? A combined study on morphology and 18S rDNA sequence data
    • Michel, R., Walochnik, J. & Aspöck, H. 2003. Pseudodidymium cryptomastigophorum nov. gen., nov. sp., a Hyperamoeba or a slime mould? A combined study on morphology and 18S rDNA sequence data. Acta Protozool., 42:331-343.
    • (2003) Acta Protozool. , vol.42 , pp. 331-343
    • Michel, R.1    Walochnik, J.2    Aspöck, H.3
  • 25
    • 0002511466 scopus 로고    scopus 로고
    • GeneDoc: Analysis and visualization of genetic variation
    • Nicholas, K. B., Nicholas, H. B. Jr.& Deerfield, D. W. II. 1997. GeneDoc: analysis and visualization of genetic variation. EMBnews., 4:14.
    • (1997) EMBnews , vol.4 , pp. 14
    • Nicholas, K.B.1    Nicholas Jr., H.B.2    Deerfield II, D.W.3
  • 26
    • 0003590781 scopus 로고
    • Freshwater Biological Association, The Ferry House, Ambleside, Cumbria
    • Page, F. C. 1988. A new key to freshwater and soil Gymnamoebae. Freshwater Biological Association, The Ferry House, Ambleside, Cumbria.
    • (1988) A New Key to Freshwater and Soil Gymnamoebae
    • Page, F.C.1
  • 27
    • 0030203863 scopus 로고    scopus 로고
    • TREEVIEW: An application to display phylogenetic trees on personal computers
    • Page, R. D. M. 1996. TREEVIEW: an application to display phylogenetic trees on personal computers. Comput. Appl. Biosci., 12:357-358.
    • (1996) Comput. Appl. Biosci. , vol.12 , pp. 357-358
    • Page, R.D.M.1
  • 28
    • 0037108318 scopus 로고    scopus 로고
    • Eukaryotic evolution: Getting to the root of the problem
    • Simpson, A. G. & Roger, A. J. 2002. Eukaryotic evolution: getting to the root of the problem. Curr. Biol., 12:R691-R693.
    • (2002) Curr. Biol. , vol.12
    • Simpson, A.G.1    Roger, A.J.2
  • 29
    • 0036865860 scopus 로고    scopus 로고
    • Identification and phylogenetic analysis of morphologically similar naked amoebae using small subunit ribosomal RNA
    • Sims, G. P., Aitken, R. & Rogerson, A. 2002. Identification and phylogenetic analysis of morphologically similar naked amoebae using small subunit ribosomal RNA. J. Eukaryot. Microbiol., 49:478-484.
    • (2002) J. Eukaryot. Microbiol. , vol.49 , pp. 478-484
    • Sims, G.P.1    Aitken, R.2    Rogerson, A.3
  • 30
    • 0033058395 scopus 로고    scopus 로고
    • Primary and secondary structure of the small-subunit ribosomal RNA of the naked, marine amoeba Vannella anglica: Phylogenetic implications
    • Sims, G. P., Rogerson, A. & Aitken, R. 1999. Primary and secondary structure of the small-subunit ribosomal RNA of the naked, marine amoeba Vannella anglica: phylogenetic implications. J. Mol. Evol. 48:740-749.
    • (1999) J. Mol. Evol. , vol.48 , pp. 740-749
    • Sims, G.P.1    Rogerson, A.2    Aitken, R.3
  • 31
    • 0041919404 scopus 로고    scopus 로고
    • The root of the eukaryote tree pinpointed
    • Stechmann, A. & Cavalier-Smith, T. 2003. The root of the eukaryote tree pinpointed. Curr. Biol., 13:R665-R666.
    • (2003) Curr. Biol. , vol.13
    • Stechmann, A.1    Cavalier-Smith, T.2
  • 32
    • 0037025197 scopus 로고    scopus 로고
    • Rooting the eukaryote tree by using a derived gene fusion
    • Stechmann, A. & Cavalier-Smith, T. 2002. Rooting the eukaryote tree by using a derived gene fusion. Science, 297:89-91.
    • (2002) Science , vol.297 , pp. 89-91
    • Stechmann, A.1    Cavalier-Smith, T.2
  • 34
    • 0031574072 scopus 로고    scopus 로고
    • The ClustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. 1997. The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res., 24:4876-4882.
    • (1997) Nucleic Acids Res. , vol.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 36
    • 0035015189 scopus 로고    scopus 로고
    • Ultrastructural identies of Mastigamoeba punctachora, Mastigamoeba simplex and Mastigella commutans and assessment of hypotheses of relatedness of the pelobionts (Protista)
    • Walker, G., Simpson, A. G. B., Edgcomb, V., Sogin, M. L. & Patterson, D. J. 2001. Ultrastructural identies of Mastigamoeba punctachora, Mastigamoeba simplex and Mastigella commutans and assessment of hypotheses of relatedness of the pelobionts (Protista). Eur. J. Protistol., 37:25-49.
    • (2001) Eur. J. Protistol. , vol.37 , pp. 25-49
    • Walker, G.1    Simpson, A.G.B.2    Edgcomb, V.3    Sogin, M.L.4    Patterson, D.J.5
  • 37
    • 0033041379 scopus 로고    scopus 로고
    • Isolation and identification by partial sequencing of the 18S ribosomal gene of free-living amoebae from necrotic tissue of Basiliscus plumifrons (Sauria: Iguanidae)
    • Walochnik, J., Hassl, A., Simon, K., Benyr, G. & Aspöck, H. 1999. Isolation and identification by partial sequencing of the 18S ribosomal gene of free-living amoebae from necrotic tissue of Basiliscus plumifrons (Sauria: Iguanidae). Parasitol. Res., 85:601-603.
    • (1999) Parasitol. Res. , vol.85 , pp. 601-603
    • Walochnik, J.1    Hassl, A.2    Simon, K.3    Benyr, G.4    Aspöck, H.5
  • 38
    • 0036012711 scopus 로고    scopus 로고
    • Phylogenetic analyses of small subunit ribosomal RNA coding regions reveal a monophyletic lineage of euglyphid testate amoebae (Order Euglyphida)
    • Wylezich, C., Meisterfeld, R., Meisterfeld, S. & Schlegel, M. 2002. Phylogenetic analyses of small subunit ribosomal RNA coding regions reveal a monophyletic lineage of euglyphid testate amoebae (Order Euglyphida). J. Eukaryot. Microbiol., 49:108-118.
    • (2002) J. Eukaryot. Microbiol. , vol.49 , pp. 108-118
    • Wylezich, C.1    Meisterfeld, R.2    Meisterfeld, S.3    Schlegel, M.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.