메뉴 건너뛰기




Volumn 136, Issue 2, 2009, Pages 311-318

Methodologies for segregation analysis and QTL mapping in plants

Author keywords

Bayesian analysis; Identity by descent; Identity by state; In silico mapping; Penalized maximum likelihood; Quantitative trait locus

Indexed keywords

ARTICLE; CHROMOSOME MAP; DOMINANT GENE; GENETIC MARKER; GENETICS; HUMAN; METHODOLOGY; PLANT; PLANT GENE; QUANTITATIVE TRAIT LOCUS;

EID: 67349187918     PISSN: 00166707     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10709-008-9313-3     Document Type: Article
Times cited : (11)

References (52)
  • 1
    • 23344436676 scopus 로고    scopus 로고
    • Extending Xu's Bayesian model for estimating polygenic effects using markers of the entire genome
    • CJF Braak MP Boer MCAM Bink 2005 Extending Xu's Bayesian model for estimating polygenic effects using markers of the entire genome Genetics 170 1435 1438
    • (2005) Genetics , vol.170 , pp. 1435-1438
    • Braak, C.J.F.1    Boer, M.P.2    McAm, B.3
  • 2
    • 0036008763 scopus 로고    scopus 로고
    • Plant molecular diversity and application to genomics
    • ES Buckler JM Thornsberry 2002 Plant molecular diversity and application to genomics Curr Opin Plant Biol 5 107 111
    • (2002) Curr Opin Plant Biol , vol.5 , pp. 107-111
    • Buckler, E.S.1    Thornsberry, J.M.2
  • 3
    • 0035930506 scopus 로고    scopus 로고
    • In silico mapping of mouse quantitative trait loci
    • EJ Chesler SL Rodriguez JS Mogil 2001 In silico mapping of mouse quantitative trait loci Science 294 2423
    • (2001) Science , vol.294 , pp. 2423
    • Chesler, E.J.1    Rodriguez, S.L.2    Mogil, J.S.3
  • 6
    • 0015183542 scopus 로고
    • A general model for the genetic analysis of pedigree data
    • RC Elston J Stewart 1971 A general model for the genetic analysis of pedigree data Hum Hered 21 523 542
    • (1971) Hum Hered , vol.21 , pp. 523-542
    • Elston, R.C.1    Stewart, J.2
  • 8
    • 0002810251 scopus 로고
    • The detection of linkage with 'dominant' abnormalities
    • RA Fisher 1935 The detection of linkage with 'dominant' abnormalities Ann Eugen 6 187 201
    • (1935) Ann Eugen , vol.6 , pp. 187-201
    • Fisher, R.A.1
  • 10
    • 33746036507 scopus 로고    scopus 로고
    • Segregation analysis on genetic system of quantitative traits in plants
    • JY Gai 2006 Segregation analysis on genetic system of quantitative traits in plants Front Biol China 1 85 92
    • (2006) Front Biol China , vol.1 , pp. 85-92
    • Gai, J.Y.1
  • 11
    • 0032425493 scopus 로고    scopus 로고
    • Identification and estimation of a QTL model and its effects
    • JY Gai JK Wang 1998 Identification and estimation of a QTL model and its effects Theor Appl Genet 97 1162 1168
    • (1998) Theor Appl Genet , vol.97 , pp. 1162-1168
    • Gai, J.Y.1    Wang, J.K.2
  • 13
    • 34249008878 scopus 로고    scopus 로고
    • A comparative study on segregation analysis and QTL mapping of quantitative traits in plants-with a case in soybean
    • JY Gai YJ Wang XL Wu 2007 A comparative study on segregation analysis and QTL mapping of quantitative traits in plants-with a case in soybean Front Agric China 1 1 7
    • (2007) Front Agric China , vol.1 , pp. 1-7
    • Gai, J.Y.1    Wang, Y.J.2    Wu, X.L.3
  • 14
    • 0035827344 scopus 로고    scopus 로고
    • In silico mapping of complex disease-related traits in mice
    • A Grupe S Germer J Usuka 2001 In silico mapping of complex disease-related traits in mice Science 292 1915 1918
    • (2001) Science , vol.292 , pp. 1915-1918
    • Grupe, A.1    Germer, S.2    Usuka, J.3
  • 15
    • 33646562204 scopus 로고    scopus 로고
    • In silico pharmcogenetics of warfarin metabolism
    • Y Guo P Weller E Farrell 2006 In silico pharmcogenetics of warfarin metabolism Nat Biotechnol 24 531 536
    • (2006) Nat Biotechnol , vol.24 , pp. 531-536
    • Guo, Y.1    Weller, P.2    Farrell, E.3
  • 16
    • 36749009685 scopus 로고    scopus 로고
    • In silico and in vitro pharmacogenetic analysis in mice
    • Y Guo P Lu E Farrell 2007 In silico and in vitro pharmacogenetic analysis in mice Proc Natl Acad Sci USA 104 17735 17740
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 17735-17740
    • Guo, Y.1    Lu, P.2    Farrell, E.3
  • 17
    • 78651020237 scopus 로고
    • A new estimate of the linkage between the genes for colour-blindness and haemophilia in man
    • JBS Haldane CAB Smith 1947 A new estimate of the linkage between the genes for colour-blindness and haemophilia in man Ann Eugen 14 10 31
    • (1947) Ann Eugen , vol.14 , pp. 10-31
    • Haldane, J.B.S.1    Smith, C.A.B.2
  • 18
    • 0015309467 scopus 로고
    • The investigation of linkage between a quantitative trait and a marker locus
    • JK Haseman RC Elston 1972 The investigation of linkage between a quantitative trait and a marker locus Behav Genet 2 3 19
    • (1972) Behav Genet , vol.2 , pp. 3-19
    • Haseman, J.K.1    Elston, R.C.2
  • 19
    • 45549084196 scopus 로고    scopus 로고
    • Mapping epistatic quantitative trait loci underlying endosperm traits using all markers on the entire genome in a random hybridization design
    • XH He Y-M Zhang 2008 Mapping epistatic quantitative trait loci underlying endosperm traits using all markers on the entire genome in a random hybridization design Heredity 101 39 47
    • (2008) Heredity , vol.101 , pp. 39-47
    • He, X.H.1    Zhang, Y.-M.2
  • 20
    • 34248372860 scopus 로고    scopus 로고
    • Bayesian association mapping of multiple quantitative trait loci and its application to the analysis of genetic variation among Oryza sativa L. germplasms
    • H Iwata Y Uga Y Yoshioka 2007 Bayesian association mapping of multiple quantitative trait loci and its application to the analysis of genetic variation among Oryza sativa L. germplasms Theor Appl Genet 114 1437 1449
    • (2007) Theor Appl Genet , vol.114 , pp. 1437-1449
    • Iwata, H.1    Uga, Y.2    Yoshioka, Y.3
  • 21
    • 0031423792 scopus 로고    scopus 로고
    • Mapping quantitative trait loci with dominant and missing markers in various crosses from two inbred lines
    • CJ Jiang ZB Zeng 1997 Mapping quantitative trait loci with dominant and missing markers in various crosses from two inbred lines Genetica 101 47 56
    • (1997) Genetica , vol.101 , pp. 47-56
    • Jiang, C.J.1    Zeng, Z.B.2
  • 22
    • 0000803318 scopus 로고
    • Construction of multilocus genetic linkage maps in humans
    • ES Lander P Green 1987 Construction of multilocus genetic linkage maps in humans Proc Natl Acad Sci USA 84 2363 2367
    • (1987) Proc Natl Acad Sci USA , vol.84 , pp. 2363-2367
    • Lander, E.S.1    Green, P.2
  • 23
    • 33750357220 scopus 로고    scopus 로고
    • Genetic variants of the P-glycoprotein gene Abcb1b modulate opioid-induced hyperalgesia, tolerance and dependence
    • DY Liang G Liao GK Lighthall 2006 Genetic variants of the P-glycoprotein gene Abcb1b modulate opioid-induced hyperalgesia, tolerance and dependence Pharmacogenet Genomics 16 825 835
    • (2006) Pharmacogenet Genomics , vol.16 , pp. 825-835
    • Liang, D.Y.1    Liao, G.2    Lighthall, G.K.3
  • 24
    • 33646817379 scopus 로고    scopus 로고
    • A genetic analysis of opioid-induced hyperalgesia in mice
    • DY Liang G Liao J Wang 2006 A genetic analysis of opioid-induced hyperalgesia in mice Anesthesiology 104 1054 1062
    • (2006) Anesthesiology , vol.104 , pp. 1054-1062
    • Liang, D.Y.1    Liao, G.2    Wang, J.3
  • 25
    • 7444225272 scopus 로고    scopus 로고
    • In silico genetics: Identification of a functional element regulating H2-Eα gene expression
    • G Liao J Wang J Guo 2004 In silico genetics: identification of a functional element regulating H2-Eα gene expression Science 306 690 695
    • (2004) Science , vol.306 , pp. 690-695
    • Liao, G.1    Wang, J.2    Guo, J.3
  • 26
    • 0029163924 scopus 로고
    • Maximum likelihood models for mapping genetic markers showing segregation distortion. 1. Backcross population
    • MB Lorieux GX Perrier Gonzalez de Leon 1995 Maximum likelihood models for mapping genetic markers showing segregation distortion. 1. Backcross population Theor Appl Genet 90 73 80
    • (1995) Theor Appl Genet , vol.90 , pp. 73-80
    • Lorieux, M.B.1    Perrier, G.X.2    De Leon, G.3
  • 28
    • 15544384637 scopus 로고    scopus 로고
    • A quantitative genetics model for viability selection
    • L Luo Y-M Zhang S Xu 2005 A quantitative genetics model for viability selection Heredity 94 347 355
    • (2005) Heredity , vol.94 , pp. 347-355
    • Luo, L.1    Zhang, Y.-M.2    Xu, S.3
  • 29
    • 34548433923 scopus 로고    scopus 로고
    • Genome-wide association analysis in diverse inbred mice: Power and population structure
    • P McClurg J Janes C Wu 2007 Genome-wide association analysis in diverse inbred mice: power and population structure Genetics 176 675 683
    • (2007) Genetics , vol.176 , pp. 675-683
    • McClurg, P.1    Janes, J.2    Wu, C.3
  • 30
    • 0035045051 scopus 로고    scopus 로고
    • Prediction of total genetic value using genome-wide dense marker maps
    • THE Meuwissen BJ Hayes ME Goddard 2001 Prediction of total genetic value using genome-wide dense marker maps Genetics 157 1819 1829
    • (2001) Genetics , vol.157 , pp. 1819-1829
    • Meuwissen, T.H.E.1    Hayes, B.J.2    Goddard, M.E.3
  • 31
    • 0043048571 scopus 로고
    • Sequential tests for the detection of linkage
    • NE Morton 1955 Sequential tests for the detection of linkage Am J Hum Genet 7 277 318
    • (1955) Am J Hum Genet , vol.7 , pp. 277-318
    • Morton, N.E.1
  • 32
    • 0017192186 scopus 로고
    • A computer program for linkage analysis of general human pedigrees
    • J Ott 1976 A computer program for linkage analysis of general human pedigrees Am J Hum Genet 28 528 529
    • (1976) Am J Hum Genet , vol.28 , pp. 528-529
    • Ott, J.1
  • 33
    • 0035155751 scopus 로고    scopus 로고
    • A quick method for computing approximate thresholds for quantitative trait loci detection
    • HP Piepho 2001 A quick method for computing approximate thresholds for quantitative trait loci detection Genetics 157 425 432
    • (2001) Genetics , vol.157 , pp. 425-432
    • Piepho, H.P.1
  • 34
    • 0033358548 scopus 로고    scopus 로고
    • Use of unlinked genetic markers to detect population stratification in association studies
    • JK Pritchard NA Rosenberg 1999 Use of unlinked genetic markers to detect population stratification in association studies Am J Hum Genet 65 220 228
    • (1999) Am J Hum Genet , vol.65 , pp. 220-228
    • Pritchard, J.K.1    Rosenberg, N.A.2
  • 35
    • 0035704870 scopus 로고    scopus 로고
    • Map-based cloning of quantitative trait loci: Progress and prospects
    • DL Remington MC Ungerer MD Purugganan 2001 Map-based cloning of quantitative trait loci: progress and prospects Genet Res 78 213 218
    • (2001) Genet Res , vol.78 , pp. 213-218
    • Remington, D.L.1    Ungerer, M.C.2    Purugganan, M.D.3
  • 36
    • 0034817026 scopus 로고    scopus 로고
    • A statistical framework for quantitative trait mapping
    • S Sen G Churchill 2001 A statistical framework for quantitative trait mapping Genetics 159 371 387
    • (2001) Genetics , vol.159 , pp. 371-387
    • Sen, S.1    Churchill, G.2
  • 37
    • 20444426232 scopus 로고    scopus 로고
    • Bayesian shrinkage estimation of quantitative trait loci parameters
    • H Wang Y-M Zhang XM Li 2005 Bayesian shrinkage estimation of quantitative trait loci parameters Genetics 170 465 480
    • (2005) Genetics , vol.170 , pp. 465-480
    • Wang, H.1    Zhang, Y.-M.2    Li, X.M.3
  • 39
    • 0037297614 scopus 로고    scopus 로고
    • Estimating polygenic effects using markers of the entire genome
    • S Xu 2003 Estimating polygenic effects using markers of the entire genome Genetics 163 789 801
    • (2003) Genetics , vol.163 , pp. 789-801
    • Xu, S.1
  • 40
    • 34250748097 scopus 로고    scopus 로고
    • Bayesian shrinkage analysis of quantitative trait loci for dynamic traits
    • R Yang S Xu 2007 Bayesian shrinkage analysis of quantitative trait loci for dynamic traits Genetics 176 1169 1185
    • (2007) Genetics , vol.176 , pp. 1169-1185
    • Yang, R.1    Xu, S.2
  • 41
    • 33744980661 scopus 로고    scopus 로고
    • Genetic association mapping and genome organization of maize
    • J Yu ES Buckler 2006 Genetic association mapping and genome organization of maize Curr Opin Biotechnol 17 155 160
    • (2006) Curr Opin Biotechnol , vol.17 , pp. 155-160
    • Yu, J.1    Buckler, E.S.2
  • 42
    • 31744440502 scopus 로고    scopus 로고
    • A unified mixed-model method for association mapping that accounts for multiple levels of relatedness
    • JM Yu G Pressoir WH Briggs 2006 A unified mixed-model method for association mapping that accounts for multiple levels of relatedness Nat Genet 38 203 208
    • (2006) Nat Genet , vol.38 , pp. 203-208
    • Yu, J.M.1    Pressoir, G.2    Briggs, W.H.3
  • 43
    • 33845648854 scopus 로고    scopus 로고
    • Advances on methods for mapping QTL in plant
    • Y-M Zhang 2006 Advances on methods for mapping QTL in plant Chin Sci Bull 51 2809 2818
    • (2006) Chin Sci Bull , vol.51 , pp. 2809-2818
    • Zhang, Y.-M.1
  • 45
    • 22144459429 scopus 로고    scopus 로고
    • A penalized maximum likelihood method for estimating epistatic effects of QTL
    • Y-M Zhang S Xu 2005 A penalized maximum likelihood method for estimating epistatic effects of QTL Heredity 95 96 104
    • (2005) Heredity , vol.95 , pp. 96-104
    • Zhang, Y.-M.1    Xu, S.2
  • 46
    • 33749615622 scopus 로고    scopus 로고
    • Advanced statistical methods for detecting multiple quantitative trait loci
    • Y-M Zhang S Xu 2005 Advanced statistical methods for detecting multiple quantitative trait loci Recent Res Dev Genet Breed 2 1 23
    • (2005) Recent Res Dev Genet Breed , vol.2 , pp. 1-23
    • Zhang, Y.-M.1    Xu, S.2
  • 47
    • 0037986690 scopus 로고    scopus 로고
    • The EIM algorithm in the joint segregation analysis of quantitative traits
    • Y-M Zhang JY Gai YH Yang 2003 The EIM algorithm in the joint segregation analysis of quantitative traits Genet Res 81 157 163
    • (2003) Genet Res , vol.81 , pp. 157-163
    • Zhang, Y.-M.1    Gai, J.Y.2    Yang, Y.H.3
  • 48
    • 18844385726 scopus 로고    scopus 로고
    • Mapping QTL using naturally occurring genetic variance among commercial inbred lines of maize (Zea mays L.)
    • Y-M Zhang YC Mao CQ Xie 2005 Mapping QTL using naturally occurring genetic variance among commercial inbred lines of maize (Zea mays L.) Genetics 169 2267 2275
    • (2005) Genetics , vol.169 , pp. 2267-2275
    • Zhang, Y.-M.1    Mao, Y.C.2    Xie, C.Q.3
  • 49
    • 50249129212 scopus 로고    scopus 로고
    • Multiple quantitative trait loci Haseman-Elston regression using all markers on the genome
    • doi: 10.1007/s00122-008-0809-0 (in press)
    • Zhang Y-M, Lü HY, Yao LL (2008) Multiple quantitative trait loci Haseman-Elston regression using all markers on the genome. Theor Appl Genet doi: 10.1007/s00122-008-0809-0 (in press)
    • (2008) Theor Appl Genet
    • Zhang, Y.-M.1    Lü, H.Y.2    Yao, L.L.3
  • 50
    • 39849084228 scopus 로고    scopus 로고
    • An em algorithm for mapping segregation distortion loci
    • C Zhu Y-M Zhang 2007 An EM algorithm for mapping segregation distortion loci BMC Genet 8 82
    • (2007) BMC Genet , vol.8 , pp. 82
    • Zhu, C.1    Zhang, Y.-M.2
  • 51
    • 33845874382 scopus 로고    scopus 로고
    • Modeling segregation distortion for viability selection I. Reconstruction of linkage maps with distorted markers
    • C Zhu C Wang Y-M Zhang 2007 Modeling segregation distortion for viability selection I. Reconstruction of linkage maps with distorted markers Theor Appl Genet 114 295 305
    • (2007) Theor Appl Genet , vol.114 , pp. 295-305
    • Zhu, C.1    Wang, C.2    Zhang, Y.-M.3
  • 52
    • 34547261626 scopus 로고    scopus 로고
    • Reconstruction of linkage maps in the distorted segregation populations of backcross, doubled haploid and recombinant inbred lines
    • C Zhu F Wang J Wang 2007 Reconstruction of linkage maps in the distorted segregation populations of backcross, doubled haploid and recombinant inbred lines Chin Sci Bull 52 1648 1653
    • (2007) Chin Sci Bull , vol.52 , pp. 1648-1653
    • Zhu, C.1    Wang, F.2    Wang, J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.