Trans-species polymorphism of the Mhc class II DRB-like gene in banded penguins (genus Spheniscus)

Immunogenetics

Volumn 61, Issue 5, 2009, Pages 341-352

  Kikkawa, Eri F ^a   Tsuda, Tomi T ^a,b   Sumiyama, Daisuke ^a   Naruse, Taeko K ^c   Fukuda, Michio ^d   Kurita, Masanori ^e   Wilson, Rory P ^f   Lemaho, Yvon ^g   Miller, Gary D ^h   Tsuda, Michio ^a   Murata, Koichi ⁱ   Kulski, Jerzy K ^a,j   Inoko, Hidetoshi ^a  

^a TOKAI UNIVERSITY   (Japan)

^b TOKUSHIMA BUNRI UNIVERSITY   (Japan)

^c TOKYO MEDICAL AND DENTAL UNIVERSITY   (Japan)

^d Tokyo Zoological Park Society   (Japan)

^e Minato ku   (Japan)

^f GEOMAR HELMHOLTZ CENTRE FOR OCEAN RESEARCH KIEL   (Germany)

^g CNRS   (France)

^h UNIVERSITY OF NEW MEXICO   (United States)

ⁱ NIHON UNIVERSITY   (Japan)

^j UNIVERSITY OF WESTERN AUSTRALIA   (Australia)

more..

Author keywords

DRB; Evolution; Mhc; Penguin; Trans species polymorphism

Indexed keywords

5' UNTRANSLATED REGION; AMINO ACID SEQUENCE; ANIMAL EXPERIMENT; ARTICLE; CONTROLLED STUDY; DNA POLYMORPHISM; DNA SEQUENCE; GENE SEQUENCE; GENETIC VARIABILITY; MAJOR HISTOCOMPATIBILITY COMPLEX; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PENGUIN; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL;

AMINO ACID SEQUENCE; ANIMALS; EXONS; GENE FREQUENCY; HISTOCOMPATIBILITY ANTIGENS CLASS II; INTRONS; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYMORPHISM, GENETIC; SPHENISCIDAE;

SPHENISCIDAE; SPHENISCUS; SPHENISCUS MENDICULUS; VERTEBRATA;

EID: 67349151780     PISSN: 00937711     EISSN: 14321211     Source Type: Journal    
DOI: 10.1007/s00251-009-0363-1     Document Type: Article

References (55)

1. A Aguilar SV Edwards TB Smith RK Wayne 2006 Patterns of variation in MHC class II beta loci of the little greenbul (Andropadus virens) with comments on MHC evolution in birds J Hered 97 133 142 10.1093/jhered/esj013
2. M Alcaide SV Edwards JJ Negro D Serrano JL Tella 2008 Extensive polymorphism and geographical variation at a positively selected MHC class II B gene of the lesser kestrel (Falco naumanni) Mol Ecol 17 2652 2665 10.1111/j.1365-294X.2008.03791.x
3. AJ Baker SL Pereira OP Haddrath KA Edge 2006 Multiple gene evidence for expansion of extant penguins out of Antarctica due to global cooling Proc Biol Sci. Jan 7273 11 17 (Pubitemid 46768038)
4. JL Bollmer FH Vargas PG Parker 2007 Low MHC variation in the endangered Galapagos penguin (Spheniscus mendiculus) Immunogenetics 59 593 602 10.1007/s00251-007-0221-y (Pubitemid 46850161)
5. JH Brown TS Jardetzky JC Gorga LJ Stern RG Urban JL Strominger DC Wiley 1993 Three-dimensional structure of the human class II histocompatibility antigen HLA-DR1 Nature 364 33 39 (Pubitemid 23233452)
6. R Burri HN Hirzel N Salamin A Roulin L Fumagalli 2008 Evolutionary patterns of MHC class II B in owls and their implications for the understanding of avian MHC evolution Mol Biol Evol 25 1180 1191 10.1093/molbev/msn065
7. LD Chaves SB Krueth KM Reed 2007 Characterization of the turkey MHC chromosome through genetic and physical mapping Cytogenet Genome Res 117 213 220 10.1159/000103182 (Pubitemid 47202681)
8. JA Clarke DT Ksepka M Stucchi M Urbina N Giannini S Bertelli Y Narváez CA Boyd 2007 Paleogene equatorial penguins challenge the proposed relationship between biogeography, diversity, and Cenozoic climate change Proc Natl Acad Sci USA 104 11545 11550 (Pubitemid 47175049)
9. AP Cutrera EA Lacey 2007 Trans-species polymorphism and evidence of selection on class II MHC loci in tuco-tucos (Rodentia: Ctenomyidae) Immunogenetics 59 937 948 (Pubitemid 50005853)
10. AP Cutrera EA Lacey 2008 Trans-species polymorphism and evidence of selection on class II MHC loci in tuco-tucos (Rodentia: Ctenomyidae) Immunogenetics 59 937 948 (Pubitemid 50005853)
11. Davis LS, Darby JT (eds) (1990) Penguin biology. Academic, San Diego
12. del Hoyo J, Elliott A, Sargatal J (eds) (1992) Handbook of the birds of the world, vol 1, Ostrich to Ducks. Lynx Editions, Barcelona
13. GG Doxiadis AJ Rouweler NG de Groot A Louwerse N Otting EJ Verschoor RE Bontrop 2006 Extensive sharing of MHC class II alleles between rhesus and cynomolgus macaques Immunogenetics 58 259 268 (Pubitemid 43673470)
14. SV Edwards M Grahn WK Potts 1995 Dynamics of MHC evolution in birds and crocodilians: amplification of class II genes with degenerate primers Mol Ecol 4 719 729 10.1111/j.1365-294X.1995.tb00272.x (Pubitemid 3012626)
15. SV Edwards EK Wakeland WK Potts 1995 Contrasting histories of avian and mammalian MHC genes revealed by class II sequences from songbirds Proc Natl Acad Sci USA 92 12200 12204 10.1073/pnas.92.26.12200 (Pubitemid 26014038)
16. SV Edwards J Gasper M March 1998 Genomics and polymorphism of Agph-DAB1, an MHC class II gene in red-winged blackbirds (Agelaius phoecineus) Mol Biol Evol 15 236 250 (Pubitemid 28113681)
17. SV Edwards J Gasper D Garrigan D Martindale BF Koop 2000 A 39-kb sequence around a blackbird MHC class II gene: ghost of selection past and songbird genome architecture Mol Biol Evol 17 1384 1395
18. R Ekblom SA Saether P Jacobsson P Fiske T Sahlman M Grahn JA Kalas J Hoglund 2007 Spatial pattern of MHC class II variation in the great snipe (Gallinago media) Mol Ecol Apr 16 1439 1451 (Pubitemid 46474783)
19. S Ellis 2004 The cattle major histocompatibility complex: is it unique? Vet Immunol Immunopathol 102 1 8 (Pubitemid 39296958)
20. SA Ellis KT Ballingall 1999 Cattle MHC: evolution in action? Immunol Rev 167 159 168 (Pubitemid 29178978)
21. JS Gasper T Shiina H Inoko SV Edwards 2001 Songbird genomics: analysis of 45 kb upstream of a polymorphic MHC class II gene in redwinged blackbirds (Agelaius phoeniceus) Genomics 75 26 34 10.1006/geno.2001.6596 (Pubitemid 32607283)
22. SJ Hackett RT Kimball S Reddy RC Bowie EL Braun MJ Braun JL Chojnowski WA Cox KL Han J Harshman CJ Huddleston BD Marks KJ Miglia WS Moore FH Sheldon DW Steadman CC Witt T Yuri 2008 A phylogenomic study of birds reveals their evolutionary history Science 320 1763 1768 (Pubitemid 350123029)
23. M Hashimoto T Kinoshita M Yamasaki H Tanaka T Imanishi H Ihara Y Ichikawa T Fukunishi 1994 Gene frequencies and haplotypic associations within the HLA region in 916 unrelated Japanese individuals Tissue Antigens 44 166 173 (Pubitemid 24298084)
24. CM Hess J Gasper HE Hoekstra CE Hill SV Edwards 2000 MHC class II pseudogene and genomic signature of a 32-kb cosmid in the house finch (Carpodacus mexicanus) Genome Res 10 613 623 10.1101/gr.10.5.613 (Pubitemid 30333189)
25. CY Ho EM Prager AC Wilson DT Osuga RE Feeney 1976 Penguin evolution: protein comparisons demonstrate phylogenetic relationship to flying aquatic birds J Mol Evol 8 271 282
26. K Hosomichi T Shiina S Suzuki M Tanaka S Shimizu S Iwamoto H Hara Y Yoshida JK Kulski H Inoko K Hanzawa 2006 The major histocompatibility complex (Mhc) class IIB region has greater genomic structural flexibility and diversity in the quail than the chicken BMC Genomics 7 322 (Pubitemid 44392320)
27. AL Hughes M Nei 1988 Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals overdominant selection Nature 352 167 170 10.1038/335167a0 (Pubitemid 18234851)
28. AL Hughes M Nei 1989 Nucleotide substitutions at major histocompatability complex class II loci: evidence for overdominant selection Proc Natl Acad Sci USA 86 958 962 10.1073/pnas.86.3.958 (Pubitemid 19056271)
29. AL Hughes M Nei 1989 Evolution of the major histocompatibility complex: independent origin of nonclassical class I genes in different groups of mammals Mol Biol Evol 6 559 579 Review (Pubitemid 19272987)
30. H Inoko A Ando M Ito K Tsuji 1986 Southern hybridization analysis of DNA polymorphisms in the HLA-D region Hum Immunol 16 304 312 10.1016/0198-8859(86) 90058-3 (Pubitemid 16068608)
31. Jouventin P (ed) (1982) Visual and vocal signals in penguins, their evolution and adaptive characters. Parey, Berlin
32. J Kaufman S Milne TWF Gobel BA Walker JP Jacob C Auffray R Zoorob S Beck 1999 The chicken B locus in a minimal-essential major histocompatibility complex Nature 401 923 925 10.1038/44856 (Pubitemid 29518962)
33. M Kenter N Otting J Anholts J Leunissen M Jonker RE Bontrop 1992 Evolutionary relationships among the primate Mhc-DQA1 and DQA2 alleles Immunogenetics 36 71 78 10.1007/BF00215282 (Pubitemid 23087644)
34. EF Kikkawa TT Tsuda TK Naruse D Sumiyama M Fukuda M Kurita K Murata RP Wilson Y LeMaho M Tsuda JK Kulski H Inoko 2005 Analysis of the sequence variations in the Mhc DRB1-like gene of the endangered Humboldt penguin (Spheniscus humboldti) Immunogenetics 57 99 107 10.1007/s00251-005-0774-6 (Pubitemid 40591250)
35. Klein J (1986) Natural history of the histocompatibility complex. Wiley, New York
36. J Klein 1987 Origin of the major histocompatibility complex polymorphism: the trans-species hypothesis Hum Immunol 19 155 162 10.1016/0198-8859(87) 90066-8 (Pubitemid 17151465)
37. NA Mackintosh 1960 The pattern of distribution of Antarctic fauna Proc R Soc Lond B Biol Sci 152 624 631
38. McCarthy EM (2006) Handbook of avian hybrids of the world. Oxford University US Press, Oxford, pp 194-195
39. Y Meyer-Lucht C Otten T Püttker S Sommer 2008 Selection, diversity and evolutionary patterns of the MHC class II DAB in free-ranging Neotropical marsupials BMC Genet 9 39
40. N Otting NG de Groot GG Doxiadis RE Bontrop 2002 Extensive Mhc-DQB variation in humans and non-human primate species Immunogenetics 54 230 239 (Pubitemid 34303687)
41. J Radwan A Kawałko JM Wójcik W Babik 2007 MHC-DRB3 variation in a free-living population of the European bison, Bison bonasus Mol Ecol 16 531 540 (Pubitemid 46161077)
42. T Shiina S Shimizu K Hosomichi S Kohara S Watanabe K Hanzawa S Beck JK Kulski H Inoko 2004 Comparative genomic analysis of two avian (quail and chicken) MHC regions J Immunol 172 6751 6763 (Pubitemid 38669112)
43. S Shimizu T Shiina K Hosomichi S Takahashi T Koyama T Onodera JK Kulski H Inoko 2004 MHC class IIB gene sequences and expression in quails (Coturnix japonica) selected for high and low antibody responses Immunogenetics 56 280 291 (Pubitemid 39119282)
44. CG Sibley JE Ahlquist BL Monroe Jr 1988 A classification of the living birds of the world based on DNA-DNA hybridization studies Auk 105 409 423
45. Sparks J, Soper T (1987) Penguins. Facts On File, New York
46. LJ Stern JH Brown TS Jardetzky JC Gorga RG Urban JL Strominger DC Wiley 1994 Crystal structure of the human class II MHC protein HLA-DR1 complexed with an influenza virus peptide Nature 368 215 221 (Pubitemid 24108837)
47. T Strand H Westerdahl J Höglund RV Alatalo H Siitari 2007 The Mhc class II of the Black grouse (Tetrao tetrix) consists of low numbers of B and Y genes with variable diversity and expression Immunogenetics 59 725 734 10.1007/s00251-007-0234-6 (Pubitemid 47415562)
48. N Takahata 1993 Relaxed natural selection in human populations during the Pleistocene. pn J Genet 68 539 547 (Pubitemid 24133663)
49. NM Thumser JD Karron 1994 Patterns of genetic polymorphism in five species of penguin Auk 111 1018 1022
50. J Trowsdale 1995 "Both man & bird & beast": comparative organization of MHC genes Immunogenetics 41 1 17 10.1007/BF00188427 (Pubitemid 24373334)
51. TT Tsuda M Tsuda T Naruse H Kawata A Ando T Shiina M Fukuda M Kurita I LeMaho JK Kulski H Inoko 2001 Phylogenetic analysis of penguin (Spheniscidae) species based on sequence variation in Mhc class II gene Immunogenetics 53 712 716 10.1007/s002510100369 (Pubitemid 33152533)
52. Williams TD (1995) The penguins Spheniscidae. Oxford University Press, Oxford
53. H Wittzell A Bernot C Auffray R Zoorob 1999 Concerted evolution of two MHC class II b loci in pheasants and domestic chickens Mol Biol Evol 16 479 490 (Pubitemid 29190955)
54. YX Xu J Pitcovski L Peterson C Auffray Y Bourlet BM Gerndt AW Nordskog SJ Lamont CM Warner 1989 Isolation and characterization of three class II MHC genomic clones from the chicken J Immunol 142 2122 2132 (Pubitemid 19081573)
55. R Zoorob A Bernot DM Renoir F Choukri C Auffrey 1993 Chicken major histocompatability complex class II genes: analysis of interallelic and interlocus sequence variance Eur J Immunol 23 1139 1145 10.1002/eji.1830230524 (Pubitemid 23120178)