Analysis of the sequence variations in the Mhc DRB1-like gene of the endangered Humboldt penguin (Spheniscus humboldti)

Immunogenetics

Volumn 57, Issue 1-2, 2005, Pages 99-107

  Kikkawa, Eri F ^a   Tsuda, Tomi T ^a,b   Naruse, Taeko K ^a   Sumiyama, Daisuke ^a   Fukuda, Michio ^c   Kurita, Masanori ^d   Murata, Koichi ^e   Wilson, Rory P ^f   LeMaho, Yvon ^g   Tsuda, Michio ^a   Kulski, Jerzy K ^a,h   Inoko, Hidetoshi ^a  

^a TOKAI UNIVERSITY   (Japan)

^b TOKUSHIMA BUNRI UNIVERSITY   (Japan)

^c Tokyo Zoological Park Society   (Japan)

^d Minato ku   (Japan)

^e NIHON UNIVERSITY   (Japan)

^f GEOMAR HELMHOLTZ CENTRE FOR OCEAN RESEARCH KIEL   (Germany)

^g CNRS   (France)

^h MURDOCH UNIVERSITY   (Australia)

Author keywords

DRB1 like class II genes; Gene sequences; Humboldt penguin; Mhc; Polymorphisms

Indexed keywords

HLA DR ANTIGEN;

ALLELE; AMINO ACID SEQUENCE; ANIMAL CELL; ARTICLE; CONTROLLED STUDY; EXON; FOWL; GENE SEQUENCE; GENETIC VARIABILITY; INTRON; MAJOR HISTOCOMPATIBILITY COMPLEX; NONHUMAN; NUCLEOTIDE SEQUENCE; PENGUIN; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE ANALYSIS;

AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; GENES, MHC CLASS II; HLA-DR ANTIGENS; HUMANS; MOLECULAR SEQUENCE DATA; PHYLOGENY; SEQUENCE HOMOLOGY; SPHENISCIDAE; VARIATION (GENETICS);

ANAS PLATYRHYNCHOS; AVES; GALLUS GALLUS; SPHENISCIDAE; SPHENISCUS HUMBOLDTI; VERTEBRATA;

EID: 17844370574     PISSN: 00937711     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00251-005-0774-6     Document Type: Article

References (28)

1. Davis LS, Darby JT (eds) (1990) Penguin biology. Academic, San Diego
2. del Hoyo J, Elliott A, Sargatal J (eds) (1992) Handbook of the birds of the world, vol 1, ostrich to ducks. Lynx Edicions, Barcelona
3. Edwards SV, Gasper J, March M (1998) Genomics and polymorphism of Agph-DAB1, an Mhc class II B gene in red-winged blackbirds (Agelaius phoeniceus). Mol Biol Evol 15:236-250
4. Gasper JS, Shiina T, Inoko H, Edwards SV (2001) Songbird genomics: analysis of 45 kb upstream of a polymorphic Mhc class II gene in red-winged blackbirds (Agelaius phoeniceus). Genomics 75:26-34
5. Hess CM, Gasper J, Hoekstra HE (2000) Mhc class II pseudogene and genomic signature of a 32-kb cosmid in the house finch (Carpodacus mexicanus). Genome Res 10:613-623
6. Ho CY, Prager EM, Wilson AC, Osuga DT, Feeney RE (1976) Penguin evolution: protein comparisons demonstrate phylogenetic relationship to flying aquatic birds. J Mol Evol 27:271-282
7. Inoko H, Ando A, Ito M, Tsuji K (1986) Southern hybridization analysis of DNA polymorphism in the HLA-D region. Hum Immunol 16:304-313
8. Jouventin P (ed) (1982) Visual and vocal signals in penguins, their evolution and adaptive characters. Parey, Berlin
9. Kaufman, J, Milne S, Gobel TW, Walker BA, Jacob JP, Auffray C, Zoorob R, Beck S (1999). The chicken B locus is a minimal essential major histocompatibility complex. Nature 401:923-925
10. Kulski JK, Shiina T, Anzai T, Kohara S, Inoko H (2002) Comparative genomic analysis of the Mhc: the evolution of class I duplication blocks, diversity and complexity from shark to man. Immunol Rev 190:95-122
11. Lambert DM, Ritchie PA, Millar CD, Holland B, Drummond AJ, Baroni C (2002) Rates of evolution in ancient DNA from Adelie penguins. Science 295:2273-2279
12. Marsh SG (2003) Nomenclature for factors of the HLA system 2002. Tissue Antigens 60:407-464
13. Marsh SGE, Parham P, Barber LD (2000) The HLA factsbook. Academic, San Diego
14. Pharr GT, Dodgson JB, Hunt HD, Bacon LD (1998) Class II Mhc cDNA in 15I5 B-congenic chickens. Immunogenetics 47:350-354
15. Reilly P (1994) Penguins of the world. Oxford University Press, UK
16. Ritchie PA, Lambert DM (2000) A repeat complex in the mitochondrial control region of Adelie penguins from Antarctica. Genome 43:613-618
17. Sato A, Figueroa F, Mayer WE, Grant PR, Grant BR, Klein J (2000) Mhc class II genes of Darwin's finches: divergence by point mutations and reciprocal recombination. In: Kasahara M (ed) Major histocompatibility complex. Springer, Berlin Heidelberg New York, pp 518-541
18. Shiina T, Shimizu C, Oka A, Teraoka Y, Imanishi T, Gojobori T, Hanzawa K, Watanabe S, Inoko H (1999) Gene organization of the quail major histocompatibility complex (MhcCoja) class I gene region. Immunogenetics 49:384-394
19. Shiina T, Inoko T, Kulski JK (2004a). An update of the HLA genomic region, locus information and disease associations. Tissue Antigens (in press)
20. Shiina T, Shimizu S, Hosomichi K, Kohara S, Watanabe S, Hanzawa K, Beck S, Kulski JK, Inoko H (2004b). Comparative genomic analysis of two avian (quail and chicken) Mhc regions. J Immunol 172:6751-6763
21. Simpson GG (1976) Penguins: past and present, here and there. Yale University Press, New Haven
22. Sparks J, Soper T (1987) Penguins. Facts on File, New York
23. The MHC Sequencing Consortium (1999) Complete sequence and gene map of a human major histocompatibility complex. Nature 401:921-923
24. Tsuda TT, Tsuda M, Naruse T, Kawata H, Ando A, Shiina T, Fukuda M, Kurita M, LeMaho I, Kulski JK, Inoko H (2001) Phylogenetic analysis of penguin (Spheniscidae) species based on sequence variation in Mhc class II gene. Immunogenetics 53:712-716
25. Van Tuinen M, Butvill DB, Kirsch JA, Hedges SB (2001) Convergence and divergence in the evolution of aquatic birds. Proc R Soc Lond B Biol Sci 268:1345-1350
26. Vincek V, Klein D, Graser RT, Figueroa F, O'hUigin C, Klein J (1995) Molecular cloning of major histocompatibility complex class II B gene cDNA from the Bengalese finch Lonchura striata. Immunogenetics 42:262-267
27. Westerdahl H, Wittzell H, Schantz T (2000) Mhc diversity in two passerine birds: no evidence for a minimal essential Mhc. Immunogenetics 52:92-100
28. Wittzel H, Bernot A, Auffray KC, Zoorob R (1999) Concerted evolution of two Mhc class II B loci in pheasants and domestic chickens. Mol Biol Evol 16:479-490