-
1
-
-
84938097887
-
Range searching in categorical data: Colored range searching on grid
-
ESA Springer New York
-
Agarwal, P.K., Govindarajan, S., Muthukrishnan, S.: Range searching in categorical data: Colored range searching on grid. In: Möhring, R.H., Raman, R. (eds.) ESA. Lecture Notes in Computer Science, vol. 2461, pp. 17-28. Springer, New York (2002)
-
(2002)
Lecture Notes in Computer Science
, vol.2461
, pp. 17-28
-
-
Agarwal, P.K.1
Govindarajan, S.2
Muthukrishnan, S.3
Möhring, R.H.4
Raman, R.5
-
2
-
-
33748684308
-
-
Report 2004-03, Institut Gaspard Monge, Université de Marne-la-Vallée
-
Allali, J., Sagot, M.-F.: The at most k-deep factor tree. Report 2004-03, Institut Gaspard Monge, Université de Marne-la-Vallée (2004)
-
(2004)
The at Most K-deep Factor Tree
-
-
Allali, J.1
Sagot, M.-F.2
-
3
-
-
0034497386
-
New data structures for orthogonal range searching
-
Alstrup, S., Brodal, G.S., Rauhe, T.: New data structures for orthogonal range searching. In: FOCS, pp. 198-207 (2000)
-
(2000)
FOCS
, pp. 198-207
-
-
Alstrup, S.1
Brodal, G.S.2
Rauhe, T.3
-
4
-
-
0002139526
-
The myriad virtues of subword trees
-
Combinatorial Algorithms on WordsSpringer Berlin
-
Apostolico, A.: The myriad virtues of subword trees. In: Combinatorial Algorithms on Words. NATO ISI Series, pp. 85-96. Springer, Berlin (1985)
-
(1985)
NATO ISI Series
, pp. 85-96
-
-
Apostolico, A.1
-
6
-
-
0037398368
-
LAGAN and Multi-LAGAN: Efficient tools for large-scale multiple alignment of genomic DNA
-
DOI 10.1101/gr.926603
-
M. Brudno C.B. Do G.M. Cooper M.F. Kim E. Davydov E.D. Green A. Sidow S. Batzoglou 2003 Lagan and multi-lagan: Efficient tools for large-scale multiple alignment of genomic dna Genome Res. 13 4 721 731 (Pubitemid 36511930)
-
(2003)
Genome Research
, vol.13
, Issue.4
, pp. 721-731
-
-
Brudno, M.1
Do, C.B.2
Cooper, G.M.3
Kim, M.F.4
Davydov, E.5
Green, E.D.6
Sidow, A.7
Batzoglou, S.8
-
7
-
-
4544388794
-
Dictionary matching and indexing with errors and don't cares
-
ACM Singapore
-
Cole, R., Gottlieb, L.-A., Lewenstein, M.: Dictionary matching and indexing with errors and don't cares. In: Babai, L. (ed.) STOC, pp. 91-100. ACM, Singapore (2004)
-
(2004)
STOC
, pp. 91-100
-
-
Cole, R.1
Gottlieb, L.-A.2
Lewenstein, M.3
Babai, L.4
-
10
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
DOI 10.1093/nar/gkh340
-
R.C. Edgar 2004 Muscle: multiple sequence alignment with high accuracy and high throughput Nucleic Acids Res. 32 5 1792 1797 (Pubitemid 38832724)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.5
, pp. 1792-1797
-
-
Edgar, R.C.1
-
11
-
-
0031381052
-
Optimal suffix tree construction with large alphabets
-
Farach, M.: Optimal suffix tree construction with large alphabets. In: FOCS, pp. 137-143 (1997)
-
(1997)
FOCS
, pp. 137-143
-
-
Farach, M.1
-
12
-
-
84944318804
-
Approximate string joins in a database (almost) for free
-
Morgan Kaufmann San Mateo
-
Gravano, L., Ipeirotis, P.G., Jagadish, H.V., Koudas, N., Muthukrishnan, S., Srivastava, D.: Approximate string joins in a database (almost) for free. In: Apers, P.M.G., Atzeni, P., Ceri, S., Paraboschi, S., Ramamohanarao, K., Snodgrass, R.T. (eds.) VLDB, pp. 491-500. Morgan Kaufmann, San Mateo (2001)
-
(2001)
VLDB
, pp. 491-500
-
-
Gravano, L.1
Ipeirotis, P.G.2
Jagadish, H.V.3
Koudas, N.4
Muthukrishnan, S.5
Srivastava, D.6
Apers, P.M.G.7
Atzeni, P.8
Ceri, S.9
Paraboschi, S.10
Ramamohanarao, K.11
Snodgrass, R.T.12
-
14
-
-
0242470267
-
Efficient multiple genome alignment
-
Höhl, M., Kurtz, S., Ohlebusch, E.: Efficient multiple genome alignment. In: ISMB, pp. 312-320 (2002)
-
(2002)
ISMB
, pp. 312-320
-
-
Höhl, M.1
-
16
-
-
35248830635
-
Simple linear work suffix array construction
-
ICALP Springer New York
-
Kärkkäinen, J., Sanders, P.: Simple linear work suffix array construction. In: Baeten, J.C.M., Lenstra, J.K., Parrow, J., Woeginger, G.J. (eds.) ICALP. Lecture Notes in Computer Science, vol. 2719, pp. 943-955. Springer, New York (2003)
-
(2003)
Lecture Notes in Computer Science
, vol.2719
, pp. 943-955
-
-
Kärkkäinen, J.1
Sanders, P.2
Baeten, J.C.M.3
Lenstra, J.K.4
Parrow, J.5
Woeginger, G.J.6
-
18
-
-
18544364760
-
Space efficient linear time construction of suffix arrays
-
P. Ko S. Aluru 2005 Space efficient linear time construction of suffix arrays J. Discrete Algorithms 3 2-4 143 156
-
(2005)
J. Discrete Algorithms
, vol.3
, Issue.24
, pp. 143-156
-
-
Ko, P.1
Aluru, S.2
-
19
-
-
14944363170
-
Patternhunter ii: Highly sensitive and fast homology search
-
M. Li B. Ma D. Kisman J. Tromp 2003 Patternhunter ii: Highly sensitive and fast homology search Genome Inf. 14 164 175
-
(2003)
Genome Inf.
, vol.14
, pp. 164-175
-
-
Li, M.1
Ma, B.2
Kisman, D.3
Tromp, J.4
-
20
-
-
0036202921
-
PatternHunter: Faster and more sensitive homology search
-
B. Ma J. Tromp M. Li 2002 Patternhunter: faster and more sensitive homology search Bioinformatics 18 3 440 445 (Pubitemid 34284945)
-
(2002)
Bioinformatics
, vol.18
, Issue.3
, pp. 440-445
-
-
Ma, B.1
Tromp, J.2
Li, M.3
-
21
-
-
26444530064
-
Text indexing with errors
-
CPM Springer New York
-
Maaß, M.G., Nowak, J.: Text indexing with errors. In: Apostolico, A., Crochemore, M., Park, K. (eds.) CPM. Lecture Notes in Computer Science, vol. 3537, pp. 21-32. Springer, New York (2005)
-
(2005)
Lecture Notes in Computer Science
, vol.3537
, pp. 21-32
-
-
Maaß, M.G.1
Nowak, J.2
Apostolico, A.3
Crochemore, M.4
Park, K.5
-
22
-
-
35348834170
-
Text indexing with errors
-
DOI 10.1016/j.jda.2006.11.001, PII S1570866706001018
-
M.G. Maaß J. Nowak 2007 Text indexing with errors J. Discrete Algorithms 5 4 662 681 doi:10.1016/j.jda.2006.11.001, selected papers from Combinatorial Pattern Matching (CPM) 2005, December 2007 (Pubitemid 47576793)
-
(2007)
Journal of Discrete Algorithms
, vol.5
, Issue.SPEC. ISS.
, pp. 662-681
-
-
Maass, M.G.1
Nowak, J.2
-
23
-
-
0027681165
-
Suffix arrays: A new method for on-line string searches
-
U. Manber E.W. Myers 1993 Suffix arrays: A new method for on-line string searches SIAM J. Comput. 22 5 935 948
-
(1993)
SIAM J. Comput.
, vol.22
, Issue.5
, pp. 935-948
-
-
Manber, U.1
Myers, E.W.2
-
24
-
-
0016942292
-
A space-economical suffix tree construction algorithm
-
E.M. McCreight 1976 A space-economical suffix tree construction algorithm J. ACM 23 2 262 272
-
(1976)
J. ACM
, vol.23
, Issue.2
, pp. 262-272
-
-
McCreight, E.M.1
-
25
-
-
18744367841
-
SITEBLAST - Rapid and sensitive local alignment of genomic sequences employing motif anchors
-
DOI 10.1093/bioinformatics/bti224
-
M. Michael C. Dieterich M. Vingron 2005 Siteblast-rapid and sensitive local alignment of genomic sequences employing motif anchors Bioinformatics 21 9 2093 2094 (Pubitemid 40668052)
-
(2005)
Bioinformatics
, vol.21
, Issue.9
, pp. 2093-2094
-
-
Michael, M.1
Dieterich, C.2
Vingron, M.3
-
26
-
-
33744962566
-
Efficient algorithms for document retrieval problems
-
Muthukrishnan, S.: Efficient algorithms for document retrieval problems. In: SODA, pp. 657-666 (2002)
-
(2002)
SODA
, pp. 657-666
-
-
Muthukrishnan, S.1
-
27
-
-
84937439801
-
Indexing text with approximate q-grams
-
CPM Springer New York
-
Navarro, G., Sutinen, E., Tanninen, J., Tarhio, J.: Indexing text with approximate q-grams. In: Giancarlo, R., Sankoff, D. (eds.) CPM. Lecture Notes in Computer Science, vol. 1848, pp. 350-363. Springer, New York (2000)
-
(2000)
Lecture Notes in Computer Science
, vol.1848
, pp. 350-363
-
-
Navarro, G.1
Sutinen, E.2
Tanninen, J.3
Tarhio, J.4
Giancarlo, R.5
Sankoff, D.6
-
28
-
-
84864158767
-
The gapped-factor tree
-
Czech Technical University Prague
-
Peterlongo, P., Allali, J., Sagot, M.-F.: The gapped-factor tree. In: Holub, J., Zdárek, J. (eds.) Stringology, pp. 182-196. Czech Technical University, Prague (2006)
-
(2006)
Stringology
, pp. 182-196
-
-
Peterlongo, P.1
Allali, J.2
Sagot, M.-F.3
Holub, J.4
Zdárek, J.5
-
29
-
-
38149048167
-
Indexing factors with gaps
-
SOFSEM (1) Springer New York
-
Rahman, M.S., Iliopoulos, C.S.: Indexing factors with gaps. In: van Leeuwen, J., Italiano, G.F., van der Hoek, W., Meinel, C., Sack, H., Plasil, F. (eds.) SOFSEM (1). Lecture Notes in Computer Science, vol. 4362, pp. 465-474. Springer, New York (2007)
-
(2007)
Lecture Notes in Computer Science
, vol.4362
, pp. 465-474
-
-
Rahman, M.S.1
Iliopoulos, C.S.2
Van Leeuwen, J.3
Italiano, G.F.4
Van Der Hoek, W.5
Meinel, C.6
Sack, H.7
Plasil, F.8
-
30
-
-
33749554843
-
Finding patterns with variable length gaps or don't cares
-
Computing and Combinatorics - 12th Annual International Conference, COCOON 2006, Proceedings
-
Rahman, M.S., Iliopoulos, C.S., Lee, I., Mohamed, M., Smyth, W.F.: Finding patterns with variable length gaps or don't cares. In: Chen, D.Z., Lee, D.T. (eds.) COCOON. Lecture Notes in Computer Science, vol. 4112, pp. 146-155. Springer, New York (2006) (Pubitemid 44531966)
-
(2006)
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
, vol.4112
, pp. 146-155
-
-
Rahman, M.S.1
Iliopoulos, C.S.2
Lee, I.3
Mohamed, M.4
Smyth, W.F.5
-
31
-
-
84947737449
-
On using q-gram locations in approximate string matching
-
ESA Springer Berlin
-
Sutinen, E., Tarhio, J.: On using q-gram locations in approximate string matching. In: Spirakis, P.G. (ed.) ESA. Lecture Notes in Computer Science, vol. 979, pp. 327-340. Springer, Berlin (1995)
-
(1995)
Lecture Notes in Computer Science
, vol.979
, pp. 327-340
-
-
Sutinen, E.1
Tarhio, J.2
Spirakis, P.G.3
-
32
-
-
0001704377
-
On-line construction of suffix trees
-
E. Ukkonen 1995 On-line construction of suffix trees Algorithmica 14 3 249 260
-
(1995)
Algorithmica
, vol.14
, Issue.3
, pp. 249-260
-
-
Ukkonen, E.1
|