Structural basis for red-shifted emission of a GFP-like protein from the marine copepod Chiridius poppei

Genes to Cells

Volumn 14, Issue 6, 2009, Pages 727-737

  Suto, Kyoko ^a,b   Masuda, Hiromi ^a,b   Takenaka, Yasuhiro ^a,b   Tsuji, Frederick I ^c   Mizuno, Hiroshi ^a,b  

^a NEC CORPORATION   (Japan)

^b NATIONAL INSTITUTE OF ADVANCED INDUSTRIAL SCIENCE AND TECHNOLOGY AIST   (Japan)

^c UNIVERSITY OF CALIFORNIA SAN DIEGO   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

GREEN FLUORESCENT LIKE PROTEIN; GREEN FLUORESCENT PROTEIN; UNCLASSIFIED DRUG;

ARTICLE; CHIRIDIUS POPPEI; CHROMATOPHORE; CONTROLLED STUDY; COPEPOD; CRYSTAL STRUCTURE; CRYSTALLOGRAPHY; DIMERIZATION; EXCITATION; MUTATIONAL ANALYSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN FOLDING; PROTEIN FUNCTION; PROTEIN STRUCTURE; SPECTRAL SENSITIVITY; WILD TYPE;

ANIMALS; COPEPODA; CRYSTALLIZATION; FLUORESCENCE; GREEN FLUORESCENT PROTEINS; MUTATION; STRUCTURE-ACTIVITY RELATIONSHIP;

AEQUOREA VICTORIA; CHIRIDIUS POPPEI; COPEPODA;

EID: 66749169280     PISSN: 13569597     EISSN: 13652443     Source Type: Journal    
DOI: 10.1111/j.1365-2443.2009.01305.x     Document Type: Article

References (29)

1. Brejc, K., Sixma, T.K., Kitts, P.A., Kain, S.R., Tsien, R.Y., Ormö, M. & Remington, S.J. (1997) Structural basis for dual excitation and photoisomerization of the Aequorea victoria green fluorescent protein. Proc. Natl. Acad. Sci. USA 94, 2306-2311.
2. Brunger, A.T., Adams, P.D., Clore, G.M., DeLano, W.L., Gros, P., Grosse-Kunstleve, R.W., Jiang, J.S., Kuszewski, J., Nilges, M., Pannu, N.S., Read, R.J., Rice, L.M., Simonson, T. & Warren, G.L. (1998) Crystallography & NMR system: A new software suite for macromolecular structure determination. Acta Crystallogr. D Biol. Crystallogr. 54, 905-921.
3. Campbell, R.E., Tour, O., Palmer, A.E., Steinbach, P.A., Baird, G.S., Zacharias, D.A. & Tsien, R.Y. (2002) A monomeric red fluorescent protein. Proc. Natl. Acad. Sci. USA 99, 7877-7882.
4. Chalfie, M., Tu, Y., Euskirchen, G., Ward, W.W. & Prasher, D.C. (1994) Green fluorescent protein as a marker for gene expression. Science 263, 802-805.
5. Dickson, R.M., Cubitt, A.B., Tsien, R.Y. & Moerner, W.E. (1997) On/ off blinking and switching behaviour of single molecules of green fluorescent protein. Nature 388, 355-358.
6. Evdokimov, A.G., Pokross, M.E., Egorov, N.S., Zaraisky, A.G., Yampolsky, I.V., Merzlyak, E.M., Shkoporov, A.N., Sander, I., Lukyanov, K.A. & Chudakov, D.M. (2006) Structural basis for the fast maturation of Arthropoda green fluorescent protein. EMBO Rep. 7, 1006-1012.
7. Gross, L.A., Baird, G.S., Hoffman, R.C., Baldridge, K.K. & Tsien, R.Y. (2000) The structure of the chromophore within DsRed, a red fluorescent protein from coral. Proc. Natl. Acad. Sci. USA 97, 11990-11995.
8. Hanson, G.T., McAnaney, T.B., Park, E.S., Rendell, M.E., Yarbrough, D.K., Chu, S., Xi, L., Boxer, S.G., Montrose, M.H. & Remington, S.J. (2002) Green fluorescent protein variants as ratiometric dual emission pH sensors. 1. Structural characterization and preliminary application. Biochemistry 41, 15477-88.
9. Heim, R., Cubitt, A.B. & Tsien, R.Y. (1995) Improved green fluorescence. Nature 373, 663-664.
10. Heim, R., Prasher, D.C. & Tsien, R.Y. (1994) Wavelength mutations and posttranslational autoxidation of green fluorescent protein. Proc. Natl. Acad. Sci. USA 91, 12501-12504.
11. Leslie, A.G. (2006) The integration of macromolecular diffraction data. Acta Crystallogr. D Biol. Crystallogr. 62, 48-57.
12. Masuda, H., Takenaka, Y., Yamaguchi, A., Nishikawa, S. & Mizuno, H. (2006) A novel yellowish-green fluorescent protein from the marine copepod, Chiridius poppei, and its use as a reporter protein in HeLa cells. Gene 372, 18-25.
13. Matz, M.V., Fradkov, A.F., Labas, Y.A., Savitsky, A.P., Zaraisky, A.G., Markelov, M.L. & Lukyanov, S.A. (1999) Fluorescent proteins from nonbioluminescent Anthozoa species. Nat. Biotechnol. 17, 969-973.
14. McRee, D.E. (1999) XtalView/Xfit-A versatile program for manipulating atomic coordinates and electron density. J. Struct. Biol. 125, 156-165.
15. Morise, H., Shimomura, O., Johnson, F.H. & Winant, J. (1974) Intermolecular energy transfer in the bioluminescent system of Aequorea. Biochemistry 13, 2656-2662.
16. Nishiuchi, Y., Inui, T., Nishio, H., Bódi, J., Kimura, T., Tsuji, F.I. & Sakakibara, S. (1998) Chemical synthesis of the precursor molecule of the Aequorea green fluorescent protein, subsequent folding, and development of fluorescence. Proc. Natl. Acad. Sci. USA 95, 13549-13554.
17. Ogawa, H., Inouye, S., Tsuji, F. I., Yasuda, K. & Umesono, K. (1995) Localization, trafficking, and temperature-dependence of the Aequorea green fluorescent protein in cultured vertebrate cells. Proc. Natl. Acad. Sci. USA 92, 11899-11903.
18. Örmo, M., Cubitt, A.B., Kallio, K., Gross, L.A., Tsien, R.Y. & Remington, S.J. (1996) Crystal structure of the Aequorea victoria green fluorescent protein. Science 273, 1392-1395.
19. Petersen, J., Wilmann, P.G., Beddoe, T., Oakley, A.J., Devenish, R.J., Prescott, M. & Rossjohn, J. (2003) The 2.0-Åcrystal structure of eqFP611, a far red fluorescent protein from the sea anemone Entacmaea quadricolor. J. Biol. Chem. 278, 44626-44631.
20. Prescott, M., Ling, M., Beddoe, T., Oakley, A.J., Dove, S., Hoegh-Guldberg, O., Devenish, R.J. & Rossjohn, J. (2003) The 2.2 Åcrystal structure of a pocilloporin pigment reveals a nonplanar chromophore conformation. Structure 11, 275-284.
21. Remington, S.J., Wachter, R.M., Yarbrough, D.K., Branchaud, B., Anderson, D.C., Kallio, K. & Lukyanov, K.A. (2005) zFP538, a yellow-fluorescent protein from Zoanthus, contains a novel three-ring chromophore. Biochemistry 44, 202-212.
22. Shagin, D.A., Barsova, E.V., Yanushevich, Y.G., Fradkov, A.F., Lukyanov, K.A., Labas, Y.A., Semenova, T.N., Ugalde, J.A., Meyers, A., Nunez, J.M., Widder, E.A., Lukyanov, S.A. & Matz, M.V. (2004) GFP-like proteins as ubiquitous metazoan superfamily: Evolution of functional features and structural complexity. Mol. Biol. Evol. 21, 841-850.
23. Shu, X., Leiderman, P., Gepshtein, R., Smith, N.R., Kallio, K., Huppert, D. & Remington, S.J. (2007) An alternative excited-state proton transfer pathway in green fluorescent protein variant. S205V. Protein Sci. 16, 2703-2710.
24. Verkhusha, V.V. & Lukyanov, K.A. (2004) The molecular properties and applications of Anthozoa fluorescent proteins and chromoproteins. Nat. Biotechnol. 22, 289-296.
25. Wachter, R.M., Elsliger, M.A., Kallio, K., Hanson, G.T. & Remington, S.J. (1998) Structural basis of spectral shifts in the yellow-emission variants of green fluorescent protein. Structure 6, 1267-1277.
26. Wall, M.A., Socolich, M. & Ranganathan, R. (2000) The structural basis for red fluorescence in the tetrameric GFP homolog DsRed. Nat. Struct. Biol. 7, 1133-1138.
27. Wilmann, P.G., Battad, J., Petersen, J., Wilce, M.C., Dove, S., Devenish, R.J., Prescott, M. & Rossjohn, J. (2006) The 2.1Åcrystal structure of copGFP, a representative member of the copepod clade within the green fluorescent protein superfamily. J. Mol. Biol. 359, 890-900.
28. Yang, F., Moss, L.G. & Phillips, G.N. Jr. (1996) The molecular structure of green fluorescent protein. Nat. Biotechnol. 14, 1246-1251.
29. Yarbrough, D., Wachter, R.M., Kallio, K., Matz, M.V. & Remington, S.J. (2001) Refined crystal structure of DsRed, a red fluorescent protein from coral, at 2.0-Åresolution. Proc. Natl. Acad. Sci. USA 98, 462-467.