Large-scale selective sweep among Segregation Distorter chromosomes in African populations of Drosophila melanogaster

PLoS Genetics

Volumn 5, Issue 5, 2009, Pages

  Presgraves, Daven C ^a,b   Gérard, Pierre R ^a   Cherukuri, Anjuli ^a   Lyttle, Terrence W ^c  

^a UNIVERSITY OF ROCHESTER   (United States)

^b HARVARD UNIVERSITY   (United States)

^c UNIVERSITY OF HAWAII   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CHROMOSOME 2; CHROMOSOME NOR; DNA SEQUENCE; DROSOPHILA MELANOGASTER; FERTILITY; GENE; GENE FREQUENCY; GENE LINKAGE DISEQUILIBRIUM; GENE SEGREGATION; GENETIC ANALYSIS; GENOME; HAPLOTYPE; HETEROZYGOTE; MEIOSIS; NONHUMAN; POPULATION DYNAMICS; POPULATION GENETICS; PROGENY; RATING SCALE; SEGREGATION DISTORTER GENE; ANIMAL; CHROMOSOME; CHROMOSOME SEGREGATION; CYTOLOGY; FEMALE; GENETIC SELECTION; GENETIC VARIABILITY; GENETICS; MALE; MOLECULAR EVOLUTION; PHYSIOLOGY;

DROSOPHILA MELANOGASTER;

ANIMALS; CHROMOSOME SEGREGATION; CHROMOSOMES; DROSOPHILA MELANOGASTER; EVOLUTION, MOLECULAR; FEMALE; FERTILITY; GENETIC VARIATION; MALE; SELECTION (GENETICS);

EID: 66649115811     PISSN: 15537390     EISSN: 15537404     Source Type: Journal    
DOI: 10.1371/journal.pgen.1000463     Document Type: Article

References (64)

1. Sandler L, Hiraizumi Y, Sandler I (1959) Meiotic drive in natural populations of Drosophila melanogaster. I. The cytogenetic basis of segregation distortion. Genetics 44: 232-250.
2. Hartl DL, Hiraizumi Y (1976) Segregation distortion. In: Novitski E, Ashburner M, eds. The Genetics and Biology of Drosophila melanogaster. New York: Academic Press.
3. Temin RG, Ganetzky B, Powers PA, Lyttle TW, Pimpinelli S, et al. (1990) Segregation Distorter (SD) in Drosophila melanogaster: genetic and molecular analysis. American Naturalist 137: 287-331.
4. Wu C-I, Hammer MF (1991) Molecular evolution of ultraselfish genes of meiotic drive systems. In: Selander RK, Clark AG, Whittam TS, eds. Evolution at the Molecular Level. SunderlandMassachusetts: Sinauer Associates.
5. Lyttle TW (1991) Segregation Distorters. Annual Review of Genetics 25: 511-557. (Pubitemid 21903732)
6. Lyttle TW (1993) Cheaters sometimes prosper: distortion of mendelian segregation by meiotic drive. Trends in Genetics 9: 205-210. (Pubitemid 23165341)
7. Presgraves DC (2008) Drive and sperm: evolution and genetics of male meiotic drive. In: Birkhead TR, Hosken DJ, Pitnick S, eds. Sperm Biology: An Evolutionary Perspective Elsevier Press.
8. Kusano A, Staber C, Chan HYE, Ganetzky B (2003) Closing the (Ran)GAP on segregation distortion in Drosophila. BioEssays 25: 108-115. (Pubitemid 36222381)
9. Hartl DL, Hiraizumi Y, Crow JF (1967) Evidence for sperm dysfunction as the mechanism of segregation distortion in Drosophila melanogaster. Proceedings of the National Acadamy of Sciences 58: 2240-2245.
10. Hauschteck-Jungen E, Hartl DL (1982) Defective histone transition during spermiogenesis in heterozygous Segregation Distorter males of Drosophila melanogaster. Genetics 101: 57-69.
11. Kettaneh NP, Hartl DL (1976) Histone transition during spermiogenesis is absent in segregation distorter males of Drosophila melanogaster. Science 193: 1020-1021.
12. Tokuyasu KT, Peacock WJ, Hardy RW (1977) Dynamics of spermiogenesis in Drosophila melanogaster. VII. Effects of Segregation Distorter (SD) chromosome. Journal of Ultrastructure Research 58. (Pubitemid 8033309)
13. Burt A, Trivers RA (2006) Genes in conflict Harvard University Press.
14. Palopoli MF (2000) Genetic partners in crime: Evolution of ultraselfish supergene that specializes in sperm sabotage. In: Wolf JB, Brodie ED, Wade MJ, eds. Epistasis and the evolutionary process. New York: Oxford University Press. pp 113-128.
15. Charlesworth B, Hartl DL (1978) Population dynamics of the segregation distorter polymorphism of Drosophila melanogaster. Genetics 89: 171-192. (Pubitemid 8367442)
16. Hartl DL (1974) Genetic dissection of segregation distortion. I. Suicide combinations of SD genes. Genetics 76: 477-486.
17. Crow JF (1991) Why is Mendelian segregation so exact? BioEssays 13: 305-312.
18. Thomson GJ, Feldman MW (1974) Population genetics of modifiers of meiotic drive. II. Linkage modification in the Segregation Distorter system. Theoretical Population Biology 5: 155-162.
19. Miklos GLG (1972) The genetic structure of chromosomes carrying Segregation Distorter. Canadian Journal of Genetics and Cytology 14: 235-243.
20. Hiraizumi Y, Martin DW, Eckstrand IA (1980) A modified model of segregation distortion in Drosophila melanogaster. Genetics 95: 693-706.
21. Sandler L, Hiraizumi Y (1960) Meiotic drive in natural populations of Drosophila melanogaster. IV. Instability at the Segregation-Distorter locus. Genetics 45: 1269-1287.
22. Waddle F, Moore C, Hadley L, Hildebrand R (1994) Stabilizer of Segregation Distortion. Drosophila Information Service 75: 96.
23. Hartl DL (1975) Segregation distortion in natural and artificial populations of Drosophila melanogaster. In: Mulcahy DL, ed. Gamete competition in plants and animals. Amsterdam: North-Holland Publishing.
24. Hiraizumi Y, Thomas AM (1984) Suppressor systems of segregation distorter (SD) chromosomes in natural populations of Drosophila melanogaster. Genetics 106: 279-292.
25. Baudry E, Viginier B, Veuille M (2004) Non-African populations of Drosophila melanogaster have a unique origin. Molecular Biology and Evolution 21: 1482-1491. (Pubitemid 38971759)
26. Thornton K, Andolfatto P (2006) Approximate Bayesian inference reveals evidence for a recent, severe bottleneck in a Netherlands population of Drosophila melanogaster. Genetics 172: 1607-1619.
27. Hutter S, Li H, Beisswanger S, DeLorenzo D, Stephan W (2007) Distinctly different sex ratios in African and European populations of Drosophila melanogaster inferred from chromosomewide single nucleotide polymorphism data. Genetics 177: 469-480. (Pubitemid 47555864)
28. Li H, Stephan W (2006) Inferring the demographic history and rate of adaptive substitution in Drosophila. Public Library of Science Biology 2: e166.
29. Palopoli MF, Wu C-I (1996) Rapid evolution of a coadapted gene complex: evidence from the Segregation Distorter (SD) system of meiotic drive in Drosophila melanogaster. Genetics 143: 1675-1688. (Pubitemid 26286945)
30. Hartl DL, Hartung N (1975) High frequency of one element of Segregation Distorter in natural populations of Drosophila melanogaster. Evolution 29: 512-518.
31. Temin RG, Marthas M (1984) Factors influencing the effect of segregation distortion in natural populations of Drosophila melanogaster. Genetics 107: 375-393. (Pubitemid 14064722)
32. Hartl DL (1973) Complementation analysis of male fertility among the segregation distorter chromosomes of Drosophila melanogaster. Genetics 73: 613-629.
33. Hartl DL (1969) Dysfuntional sperm production in Drosophila melanogaster males homozygous for the segregation distorter elements. Proceedings of the National Acadamy of Sciences 63: 782-789.
34. Cicchetti R, Argentin G, Nicoletti B (1990) The segregation distortion (SD) phenomenon in wild populations of Drosophila melanogaster: interaction between chromosomes 3 and SD chromosomes 2. Genetica 81: 77-84.
35. Kusano A, Staber C, Ganetzky B (2001) Nuclear mislocalization of enzymatically active RanGAP causes segregation distortion in Drosophila. Developmental Cell 1: 351-361. (Pubitemid 33586085)
36. Kusano A, Staber C, Ganetzky B (2002) Segregation distortion induced by wild-type RanGAP in Drosophila. Proceedings of the National Acadamy of Sciences 99: 6866-6870. (Pubitemid 34526224)
37. Merrill C, Bayraktaroglu L, Kusano A, Ganetzky B (1999) Truncated RanGAP encoded by the Segregation Distorter locus of Drosophila. Science 283: 1742-1745. (Pubitemid 129502063)
38. Wu C-I, Lyttle TW, Wu M-L, Lin GF (1988) Association between DNA satellite sequences and the Responder of Segregation Distortion in D. melanogaster. Cell 54: 179-189. (Pubitemid 18188750)
39. Caudron M, Bunt G, Bastiaens P, Karsenti E (2005) Spatial coordination of spindle assembly by chromosome-mediated signaling gradients. Science 309: 1373-1376. (Pubitemid 41209364)
40. Minakhina S, Myers R, Druzhinina M, Steward R (2005) Crosstalk between the actin cytoskeleton and Ran-mediated nuclear transport. BMC Cell Biology 6: 32. (Pubitemid 41372407)
41. Weis K (2003) Regulating access to the genome: nucleocytoplasmic transport throughout the cell cycle. Cell 112: 441-451. (Pubitemid 36263078)
42. Charlesworth B (1996) Background selection and patterns of genetic diversity in Drosophila melanogaster. Genetical Research 68: 131-149. (Pubitemid 26391952)
43. Begun DJ, Aquadro CF (1992) Levels of naturally occurring DNA polymorphism correlate with recombination rates in D. melanogaster. Nature 356: 519-520.
44. Tajima F (1989) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123: 585-595. (Pubitemid 19274682)
45. Fay JC, Wu C-I (2000) Hitchhiking under positive Darwinian selection. Genetics 155: 1405-1413. (Pubitemid 30463447)
46. Betran E, Rozas J, Navarro A, Barbadilla A (1997) The estimation of the number and the length distribution of gene conversion tracts from population DNA sequence data. Genetics 146: 89-99. (Pubitemid 27194392)
47. Kelly JK (1997) A test of neutrality based on interlocus associations. Genetics 146: 1197-1206. (Pubitemid 27291000)
48. Innan H, Zhang K, Marjoram P, Tavare S, Rosenberg NA (2005) Statistical tests of the coalescent model based on the haplotype frequency distribution and the number of segregating sites. Genetics 169: 1763-1777. (Pubitemid 40547481)
49. Depaulis F, Mousset S, Veuille M (2005) Detecting selective sweeps with haplotype tests: Hitchhiking and haplotype tests. In: Nurminsky D, ed. Selective Sweep. New York: Kluwer Academic/Plenum.
50. Aulard S, David JR, Lemeunier F (2002) Chromosomal inversion polymorphism in Afrotropical populations of Drosophila melanogaster. Genetical Research 79: 49-63. (Pubitemid 34256893)
51. Hudson RR (2000) A new statistic for detecting genetic differentiation. Genetics 155: 2011-2014. (Pubitemid 30626415)
52. Rozas J, Segarra C, Ribo G, Aguade M (1999) Molecular population genetics of the rp49 gene region in different chromosomal inversions of Drosophila subobscura. Genetics 151: 189-202. (Pubitemid 29031887)
53. Hey J, Kliman RM (1993) Population genetics and phylogenetics of DNA sequence variation at multiple loci within the Drosophila melanogaster species complex. Molecular Biology and Evolution 10: 804-822. (Pubitemid 23204797)
54. Hiraizumi Y, Crow JF (1960) Heterozygous effects on viability, fertility, rate of development, and longevity of Drosophila chromosomes that are lethal when homozygous. Genetics 45: 1071-1083.
55. Brittnacher JG, Ganetzky B (1983) On the components of segregation distortion in Drosophila melanogaster. II. Deletion mapping and dosage analysis of the SD locus. Genetics 103: 659-673.
56. Miklos GLG (1972) An investigation of the components of segregation distorter systems in Drosophila melanogaster. Genetics 70: 405-418.
57. Babcock CS, Anderson WW (1996) Molecular evolution of the sex-ratio inversion complex in Drosophila pseudoobscura: analysis of the esterase-5 gene region. Molecular Biology and Evolution 13: 287-308. (Pubitemid 26035312)
58. Derome N, Baudry E, Ogereau D, Veuille M, Montchamp-Moreau C (2008) Selective sweeps in a 2-locus model for sex-ratio meiotic drive in Drosophila simulans. Molecular Biology and Evolution 25: 409-416. (Pubitemid 351231614)
59. Kingan SB, Hartl DL (submitted) Signatures of selection on the genes of the Winters sex-ratio in Drosophila simulans. Molecular Biology and Evolution.
60. Dyer K, Charlesworth B, Jaenike J (2007) Chromosome-wide linkage disequilibrium as a consequence of meiotic drive. Proceedings of the National Academy of Sciences 104: 1587-1592. (Pubitemid 46214634)
61. Fishman L, Saunders A (2008) Centromere-associated female meiotic drive entails male fitness costs in monkeyflowers. Science 322: 1559-1562.
62. Begun DJ, Holloway AK, S K, Hillier LW, Poh YP, et al. (2007) Population genomics: Whole-genome analysis of polymorphism and divergence in Drosophila simulans. Public Library of Science Biology 5: 2534-2559. (Pubitemid 350276929)
63. Powers PA, Ganetzky B (1991) On the components of segregation distortion in Drosophila melanogaster. V. Molecular analysis of the Sd locus. Genetics 129: 133-144.
64. Rozas J, Sanchez-DelBarrio JC, Messeguer X, Rozas R (2003) DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19: 2496-2497.