Proteomic analysis of parthenogenetic and in vitro fertilized porcine embryos

Proteomics

Volumn 9, Issue 10, 2009, Pages 2846-2860

  Gupta, Mukesh Kumar ^a   Jung, Mi Jang ^a   Jin, Woo Jung ^a   Sang, Jun Uhm ^a   Kwang, Pyo Kim ^a   Hoon, Taek Lee ^a  

^a Konkuk University   (South Korea)

Author keywords

In vitro fertilization; MS; Parthenogenesis; Pig embryo

Indexed keywords

MEMBRANE PROTEIN;

ARTICLE; BLASTOCYTE; CONTROLLED STUDY; EMBRYO; FERTILIZATION IN VITRO; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; NONHUMAN; OOCYTE; POLYACRYLAMIDE GEL ELECTROPHORESIS; POLYSPERMY; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEOMICS; SWINE;

ANIMALS; BLASTOCYST; CHROMATOGRAPHY, LIQUID; ELECTROPHORESIS, POLYACRYLAMIDE GEL; EMBRYO, MAMMALIAN; FERTILIZATION; FERTILIZATION IN VITRO; PARTHENOGENESIS; PROTEINS; PROTEOME; PROTEOMICS; REPRODUCIBILITY OF RESULTS; SWINE; TANDEM MASS SPECTROMETRY;

MAMMALIA; SUIDAE; SUS; SUS SCROFA;

EID: 66449116602     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.200800700     Document Type: Article

References (80)

1. Gao, L., Sun, C., Qiu, H. L., Liu, H. et al., Cloning and characterization of a novel human zinc finger gene, hKid3, from a C2H2-ZNF enriched human embryonic cDNA library. Biochem. Biophys. Res. Commun. 2004, 325, 1145-1152. (Pubitemid 39535883)
2. Ko, M. S., Embryogenomics: developmental biology meets genomics. Trends Biotechnol. 2001, 19, 511-518. (Pubitemid 33063611)
3. Ellederova, Z., Halada, P., Man, P., Kubelka, M. et al., Protein patterns of pig oocytes during in vitro maturation. Biol. Reprod. 2004, 71, 1533-1539. (Pubitemid 39403247)
4. Novak, S., Paradis, F., Savard, C., Tremblay, K., Sirard, M. A., Identification of porcine oocyte proteins that are associated with somatic cell nuclei after co-incubation. Biol. Reprod. 2004, 71, 1279-1289. (Pubitemid 39249813)
5. Bhojwani, M., Rudolph, E., Kanitz, W., Zuehlke, H. et al., Molecular analysis of maturation processes by protein and phosphoprotein profiling during in vitro maturation of bovine oocytes: a proteomic approach. Cloning Stem Cells 2006, 8, 259-274. (Pubitemid 46146034)
6. Vitale, A. M., Calvert, M. E., Mallavarapu, M., Yurttas, P. et al., Proteomic profiling of murine oocyte maturation. Mol. Reprod. Dev. 2007, 74, 608-616. (Pubitemid 46493750)
7. Chae, J. I., Cho, S. K., Seo, J. W., Yoon, T. S. et al., Proteomic analysis of the extraembryonic tissue from cloned porcine embryos. Mol. Cell. Proteomics 2006, 5, 1559-1566. (Pubitemid 44480385)
8. Lee, S. Y., Park, J. Y., Choi, Y. J., Cho, S. K. et al., Comparative proteomic analysis associated with term placental insufficiency in cloned pig. Proteomics 2007, 7, 1303-1315. (Pubitemid 46716052)
9. Fountoulakis, M., Proteomics: current technologies and applications in neurological disorders and toxicology. Amino Acids 2001, 21, 363-381. (Pubitemid 34025166)
10. Lubec, G., Krapfenbauer, K., Fountoulakis, M., Proteomics in brain research: potentials and limitations. Prog. Neurobiol. 2003, 69, 193-211. (Pubitemid 36577323)
11. Katz-Jaffe, M. G., Linck, D. W., Schoolcraft, W. B., Gardner, D. K., A proteomic analysis of mammalian preimplantation embryonic development. Reproduction 2005, 130, 899-905. (Pubitemid 41830099)
12. Katz-Jaffe, M. G., Gardner, D. K., Schoolcraft, W. B., Proteomic analysis of individual human embryos to identify novel biomarkers of development and viability. Fertil. Steril. 2006, 85, 101-107. (Pubitemid 43063430)
13. Katz-Jaffe, M. G., Schoolcraft, W. B., Gardner, D. K., Analysis of protein expression (secretome) by human and mouse preimplantation embryos. Fertil. Steril. 2006, 86, 678-685. (Pubitemid 44307038)
14. Baggerly, K. A., Morris, J. S., Coombes, K. R., Reproducibility of SELDI-TOF protein patterns in serum: comparing datasets from different experiments. Bioinformatics 2004, 20, 777-785. (Pubitemid 38443834)
15. Combelles, C. M., Racowsky, C., Protein expression profiles of early embryos - an important step in the right direction: just not quite ready for prime time. Fertil. Steril. 2006, 86, 493; author reply 493. (Pubitemid 43962982)
16. Washburn, M. P., Wolters, D., Yates, J. R., III, Large-scale analysis of the yeast proteome by multidimensional protein identification technology. Nat. Biotechnol. 2001, 19, 242-247. (Pubitemid 32220565)
17. Wu, C. C., MacCoss, M. J., Howell, K. E., Yates, J. R., III, A method for the comprehensive proteomic analysis of membrane proteins. Nat. Biotechnol. 2003, 21, 532-538. (Pubitemid 36532018)
18. Schirle, M., Heurtier, M. A., Kuster, B., Profiling core proteomes of human cell lines by one-dimensional PAGE and liquid chromatography-tandem mass spectrometry. Mol. Cell. Proteomics 2003, 2, 1297-1305.
19. Park, Y. M., Kim, J. Y., Kwon, K. H., Lee, S. K. et al., Profiling human brain proteome by multi-dimensional separations coupled with MS. Proteomics 2006, 6, 4978-4986. (Pubitemid 44483893)
20. Edmondson, R. D., Vondriska, T. M., Biederman, K. J., Zhang, J. et al., Protein kinase C epsilon signaling complexes include metabolism- and transcription/translation-related proteins: complimentary separation techniques with LC/MS/MS. Mol. Cell. Proteomics 2002, 1, 421-433.
21. Hamatani, T., Ko, M., Yamada, M., Kuji, N. et al., Global gene expression profiling of preimplantation embryos. Hum. Cell 2006, 19, 98-117.
22. Kono, T., Obata, Y., Wu, Q., Niwa, K. et al., Birth of parthenogenetic mice that can develop to adulthood. Nature 2004, 428, 860-864. (Pubitemid 38529501)
23. Ju, J. Y., Park, C. Y., Gupta, M. K., Uhm, S. J. et al., Establishment of stem cell lines from nuclear transferred and parthenogenetically activated mouse oocytes for therapeutic cloning. Fertil. Steril. 2008, 89, 1314-1323.
24. Kim, K., Lerou, P., Yabuuchi, A., Lengerke, C. et al., Histocompatible embryonic stem cells by parthenogenesis. Science 2007, 315, 482-486. (Pubitemid 46178390)
25. Gupta, M. K., Uhm, S. J., Han, D. W., Lee, H. T., Embryo quality and production efficiency of porcine parthenotes is improved by phytohemagglutinin. Mol. Reprod. Dev. 2007, 74, 435-444. (Pubitemid 46256945)
26. Gupta, M. K., Uhm, S. J., Lee, H. T., Differential but beneficial effect of phytohemagglutinin on efficiency of in vitro porcine embryo production by somatic cell nuclear transfer or in vitro fertilization. Mol. Reprod. Dev. 2007, 74, 1557-1567. (Pubitemid 350058421)
27. Gupta, M. K., Uhm, S. J., Lee, H. T., Sexual maturity and reproductive phase of oocyte donor influence the developmental ability and apoptosis of cloned and parthenogenetic porcine embryos. Anim. Reprod. Sci. 2008, 108, 107-121.
28. Gupta, M. K., Uhm, S. J., Lee, S. H., Lee, H. T., Role of nonessential amino acids on porcine embryos produced by parthenogenesis or somatic cell nuclear transfer. Mol. Reprod. Dev. 2008, 75, 588-597.
29. Uhm, S. J., Gupta, M. K., Kim, T., Lee, H. T., Expression of enhanced green fluorescent protein in porcine- and bovine-cloned embryos following interspecies somatic cell nuclear transfer of fibroblasts transfected by retrovirus vector. Mol. Reprod. Dev. 2007, 74, 1538-1547. (Pubitemid 350058419)
30. Uhm, S. J., Gupta, M. K., Yang, J. H., Lee, S. H., Lee, H. T., Selenium improves the developmental ability and reduces the apoptosis in porcine parthenotes. Mol. Reprod. Dev. 2007, 74, 1386-1394. (Pubitemid 47479956)
31. Kure-bayashi, S., Miyake, M., Okada, K., Kato, S., Successful implantation of in vitro-matured, electro-activated oocytes in the pig. Theriogenology 2000, 53, 1105-1119. (Pubitemid 30252216)
32. Cui, X. S., Li, X. Y., Kim, N. H., Global gene transcription patterns in in vitro-cultured fertilized embryos and diploid and haploid murine parthenotes. Biochem. Biophys. Res. Commun. 2007, 352, 709-715. (Pubitemid 44880312)
33. Vassena, R., Han, Z., Gao, S., Baldwin, D. A. et al., Tough beginnings: alterations in the transcriptome of cloned embryos during the first two cell cycles. Dev. Biol. 2007, 304, 75-89. (Pubitemid 46399670)
34. Misirlioglu, M., Page, G. P., Sagirkaya, H., Kaya, A. et al., Dynamics of global transcriptome in bovine matured oocytes and preimplantation embryos. Proc. Natl. Acad. Sci. USA 2006, 103, 18905-18910. (Pubitemid 350002801)
35. Adjaye, J., Whole-genome approaches for large-scale gene identification and expression analysis in mammalian preimplantation embryos. Reprod. Fertil. Dev. 2005, 17, 37-45. (Pubitemid 40103663)
36. Hayashi, S., Yang, J., Christenson, L., Yanagimachi, R., Hecht, N. B., Mouse preimplantation embryos developed from oocytes injected with round spermatids or spermatozoa have similar but distinct patterns of early messenger RNA expression. Biol. Reprod. 2003, 69, 1170-1176. (Pubitemid 37173848)
37. Ziyyat, A., Lefevre, A., Differential gene expression in preimplantation embryos from mouse oocytes injected with round spermatids or spermatozoa. Hum. Reprod. 2001, 16, 1449-1456. (Pubitemid 32640322)
38. Chu, D. S., Liu, H., Nix, P., Wu, T. F. et al., Sperm chromatin proteomics identifies evolutionarily conserved fertility factors. Nature 2006, 443, 101-105. (Pubitemid 44344056)
39. Gupta, M. K., Uhm, S. J., Lee, H. T., Cryopreservation of immature and in vitro matured porcine oocytes by solid surface vitrification. Theriogenology 2007, 67, 238-248. (Pubitemid 44880394)
40. Parrish, J. J., Susko-Parrish, J., Winer, M. A., First, N. L., Capacitation of bovine sperm by heparin. Biol. Reprod. 1988, 38, 1171-1180.
41. Abeydeera, L. R., Day, B. N., In vitro penetration of pig oocytes in a modified Tris-buffered medium: effect of BSA, caffeine and calcium. Theriogenology 1997, 48, 537-544. (Pubitemid 28135462)
42. Uhm, S. J., Gupta, M. K., Das, Z. C., Kim, J. H. et al., Effect of transgene introduction and recloning on efficiency of porcine transgenic cloned embryo production in vitro. Reprod. Domest. Anim. 2008, 44, 106-115.
43. Wright, R. W., Jr., Grammer, J., Bondioli, K., Kuzan, F., Menino Jr. A., Protein content of porcine embryos during the first nine days of development. Theriogenology 1981, 15, 235-239.
44. Giorgianni, F., Cappiello, A., Beranova-Giorgianni, S., Palma, P. et al., LC-MS/MS analysis of peptides with methanol as organic modifier: improved limits of detection. Anal. Chem. 2004, 76, 7028-7038. (Pubitemid 39600877)
45. Yurewicz, E. C., Pack, B. A., Sacco, A. G., Porcine oocyte zona pellucida M(r) 55,000 glycoproteins: identification of O-glycosylated domains. Mol. Reprod. Dev. 1992, 33, 182-188.
46. Barraud-Lange, V., Naud-Barriant, N., Saffar, L., Gattegno, L. et al., Alpha6beta1 integrin expressed by sperm is determinant in mouse fertilization. BMC Dev. Biol. 2007, 7, 102. (Pubitemid 350134907)
47. Lee, E. R., Kang, Y. J., Kim, J. H., Lee, H. T., Cho, S. G., Modulation of apoptosis in HaCaT keratinocytes via differential regulation of ERK signaling pathway by flavonoids. J. Biol. Chem. 2005, 280, 31498-31507. (Pubitemid 41291892)
48. Lee, S. J., Kim, K. H., Park, J. S., Jung, J. W. et al., Comparative analysis of cell surface proteins in chronic and acute leukemia cell lines. Biochem. Biophys. Res. Commun. 2007, 357, 620-626. (Pubitemid 46653824)
49. Das, S., Rafter, J. D., Kim, K. P., Gygi, S. P., Cho, W., Mechanism of group IVA cytosolic phospholipase A(2) activation by phosphorylation. J. Biol. Chem. 2003, 278, 41431-41442. (Pubitemid 37280972)
50. Sathish, J. G., Walters, J., Luo, J. C., Johnson, K. G. et al., CD22 is a functional ligand for SH2 domain-containing protein-tyrosine phosphatase-1 in primary T cells. J. Biol. Chem. 2004, 279, 47783-47791. (Pubitemid 39540927)
51. Michel, P. E., Crettaz, D., Morier, P., Heller, M. et al., Proteome analysis of human plasma and amniotic fluid by Off-Gel isoelectric focusing followed by nano-LC-MS/MS. Electrophoresis 2006, 27, 1169-1181.
52. Qian, W. J., Liu, T., Monroe, M. E., Strittmatter, E. F. et al., Probability-based evaluation of peptide and protein identifications from tandem mass spectrometry and SEQUEST analysis: the human proteome. J. Proteome Res. 2005, 4, 53-62. (Pubitemid 40352578)
53. Bhat, V. B., Choi, M. H., Wishnok, J. S., Tannenbaum, S. R., Comparative plasma proteome analysis of lymphoma-bearing SJL mice. J. Proteome Res. 2005, 4, 1814-1825. (Pubitemid 41464811)
54. Gerber, S. A., Rush, J., Stemman, O., Kirschner, M. W., Gygi, S. P., Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS. Proc. Natl. Acad. Sci. USA 2003, 100, 6940-6945. (Pubitemid 36706372)
55. Anderson, L., Hunter, C. L., Quantitative mass spectrometric multiple reaction monitoring assays for major plasma proteins. Mol. Cell. Proteomics 2006, 5, 573-588.
56. Jarrell, V. L., Day, B. N., Prather, R. S., The transition from maternal to zygotic control of development occurs during the 4-cell stage in the domestic pig, Sus scrofa: quantitative and qualitative aspects of protein synthesis. Biol. Reprod. 1991, 44, 62-68.
57. Massicotte, L., Coenen, K., Mourot, M., Sirard, M. A., Maternal housekeeping proteins translated during bovine oocyte maturation and early embryo development. Proteomics 2006, 6, 3811-3820. (Pubitemid 44065159)
58. Ao, A., Erickson, R. P., Winston, R. M., Handyside, A. H., Transcription of paternal Y-linked genes in the human zygote as early as the pronucleate stage. Zygote 1994, 2, 281-287. (Pubitemid 2162697)
59. Schoenbeck, R. A., Peters, M. S., Rickords, L. F., Stumpf, T. T., Prather, R. S., Characterization of deoxyribonucleic acid synthesis and the transition from maternal to embryonic control in the 4-cell porcine embryo. Biol. Reprod. 1992, 47, 1118-1125.
60. Han, D. W., Im, Y. B., Do, J. T., Gupta, M. K. et al., Methylation status of putative differentially methylated regions of porcine IGF2 and H19. Mol. Reprod. Dev. 2008, 75, 777-784.
61. Han, D. W., Song, S. J., Uhum, S. J., Do, J. T. et al., Expression of IGF2 and IGF receptor mRNA in bovine nuclear transferred embryos. Zygote 2003, 11, 245-252. (Pubitemid 38692016)
62. Im, Y. B., Han, D. W., Gupta, M. K., Uhm, S. J. et al., Methylation pattern of H19 gene at various preimplantation development stages of in vitro fertilized and cloned porcine embryos. Reprod. Dev. Biol. 2008, 31, 83-90.
63. Gao, S., Czirr, E., Chung, Y. G., Han, Z., Latham, K. E., Genetic variation in oocyte phenotype revealed through parthenogenesis and cloning: correlation with differences in pronuclear epigenetic modification. Biol. Reprod. 2004, 70, 1162-1170. (Pubitemid 38387729)
64. Jeong, Y. S., Yeo, S., Park, J. S., Koo, D. B. et al., DNA methylation state is preserved in the sperm-derived pronucleus of the pig zygote. Int. J. Dev. Biol. 2007, 51, 707-714. (Pubitemid 350205605)
65. Rinaudo, P., Schultz, R. M., Effects of embryo culture on global pattern of gene expression in preimplantation mouse embryos. Reproduction 2004, 128, 301-311. (Pubitemid 39242706)
66. Rinaudo, P. F., Giritharan, G., Talbi, S., Dobson, A. T., Schultz, R. M., Effects of oxygen tension on gene expression in preimplantation mouse embryos. Fertil. Steril. 2006, 86, 1252-1265, 1265 e1-36. (Pubitemid 44427818)
67. Rogers, N. T., Halet, G., Piao, Y., Carroll, J. et al., The absence of a Ca(21) signal during mouse egg activation can affect parthenogenetic preimplantation development, gene expression patterns, and blastocyst quality. Reproduction 2006, 132, 45-57. (Pubitemid 44123383)
68. Park, M. R., Cho, S. K., Lee, S. Y., Choi, Y. J. et al., A rare and often unrecognized cerebromeningitis and hemodynamic disorder: a major cause of sudden death in somatic cell cloned piglets. Proteomics 2005, 5, 1928-1939. (Pubitemid 40686237)
69. Ward, W. S., Kishikawa, H., Akutsu, H., Yanagimachi, H., Yanagimachi, R., Further evidence that sperm nuclear proteins are necessary for embryogenesis. Zygote 2000, 8, 51-56.
70. Ostermeier, G. C., Miller, D., Huntriss, J. D., Diamond, M. P., Krawetz, S. A., Reproductive biology: delivering spermatozoan RNA to the oocyte. Nature 2004, 429, 154.
71. Ostermeier, G. C., Goodrich, R. J., Moldenhauer, J. S., Diamond, M. P., Krawetz, S. A., A suite of novel human spermatozoal RNAs. J. Androl. 2005, 26, 70-74. (Pubitemid 39665278)
72. Fukagawa, T., Nogami, M., Yoshikawa, M., Ikeno, M. et al., Dicer is essential for formation of the heterochromatin structure in vertebrate cells. Nat. Cell Biol. 2004, 6, 784-791. (Pubitemid 39144485)
73. Morris, K. V., Chan, S. W., Jacobsen, S. E., Looney, D. J., Small interfering RNA-induced transcriptional gene silencing in human cells. Science 2004, 305, 1289-1292. (Pubitemid 39129233)
74. Ogawa, H., Wu, Q., Komiyama, J., Obata, Y., Kono, T., Disruption of parental-specific expression of imprinted genes in uniparental fetuses. FEBS Lett. 2006, 580, 5377-5384. (Pubitemid 44415818)
75. Lee, H. Y., Cui, X. S., Lee, K. A., Kim, N. H., Annealing control primer system identifies differentially expressed genes in blastocyst-stage porcine parthenotes. Zygote 2006, 14, 71-80.
76. Latham, K. E., Akutsu, H., Patel, B., Yanagimachi, R., Comparison of gene expression during preimplantation development between diploid and haploid mouse embryos. Biol. Reprod. 2002, 67, 386-392. (Pubitemid 34803919)
77. Ito, M., Nakasato, M., Suzuki, T., Sakai, S. et al., Localization of janus kinase 2 to the nuclei of mature oocytes and early cleavage stage mouse embryos. Biol. Reprod. 2004, 71, 89-96. (Pubitemid 38915313)
78. Truchet, S., Chebrout, M., Djediat, C., Wietzerbin, J., Debey, P., Presence of permanently activated signal transducers and activators of transcription in nuclear interchromatin granules of unstimulated mouse oocytes and preimplantation embryos. Biol. Reprod. 2004, 71, 1330-1339. (Pubitemid 39249820)
79. Ben-Aharon, I., Ben-Yosef, D., Amit, A., Shalgi, R., Expression and immunolocalization of the calpain-calpastatin system in the human oocyte. Fertil. Steril. 2005, 83, 1807-1813. (Pubitemid 40824817)
80. Malcov, M., Ben-Yosef, D., Glaser, T., Shalgi, R., Changes in calpain during meiosis in the rat egg. Mol. Reprod. Dev. 1997, 48, 119-126. (Pubitemid 27347045)