Human embryonic and mesenchymal stem cells express different nuclear proteomes

Stem Cells and Development

Volumn 18, Issue 5, 2009, Pages 793-801

  Jaishankar, Amritha ^a   Barthelery, Miguel ^a   Freeman, Willard M ^a   Salli, Ugur ^a   Ritty, Timothy M ^a   Vrana, Kent E ^a  

^a PENN STATE COLLEGE OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; NUCLEAR PROTEIN; PROTEIN PONTIN52; PROTEIN REPTIN52; PROTEOME; UNCLASSIFIED DRUG; WNT PROTEIN;

ANIMAL CELL; ARTICLE; BONE MARROW; CELL DIFFERENTIATION; CELL PROLIFERATION; CELL RENEWAL; CHROMATIN; CONTROLLED STUDY; DATA BASE; EMBRYONIC STEM CELL; HUMAN; HUMAN CELL; MESENCHYMAL STEM CELL; MOUSE; NONHUMAN; NUCLEOTIDE SEQUENCE; PLASTICITY; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEOMICS; QUANTITATIVE ANALYSIS; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; TWO DIMENSIONAL GEL ELECTROPHORESIS; WESTERN BLOTTING;

ADOLESCENT; ADULT; CARRIER PROTEINS; CELL LINE; CELL NUCLEUS; DNA HELICASES; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; EMBRYONIC STEM CELLS; FEMALE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, DEVELOPMENTAL; HUMANS; MALE; MESENCHYMAL STEM CELLS; METABOLIC NETWORKS AND PATHWAYS; PROTEOME; REPRODUCIBILITY OF RESULTS; RNA, MESSENGER;

EID: 66249117302     PISSN: 15473287     EISSN: None     Source Type: Journal    
DOI: 10.1089/scd.2008.0156     Document Type: Article

References (50)

1. Krabbe C, J Zimmer and M Meyer. (2005). Neural transdiffer-entiation of mesenchymal stem cells - a critical review. APMIS 113:831- 844.
2. Wakitani S, T Saito and AI Caplan. (1995). Myogenic cells derived from rat bone marrow mesenchymal stem cells exposed to 5-azacytidine. Muscle Nerve 18:1417-1426.
3. Orlic D, J Kajstura, S Chimenti, I Jakoniuk, SM Anderson, B Li, J Pickel, R McKay, B Nadal-Ginard, DM Bodine, A Leri and P Anversa. (2001). Bone marrow cells regenerate infarcted myocardium. Nature 410:701-705.
4. Petersen BE, WC Bowen, KD Patrene, WM Mars, AK Sullivan, N Murase, SS Boggs, JS Greenberger and JP Goff. (1999). Bone marrow as a potential source of hepatic oval cells. Science 284:1168-1170.
5. Kopen GC, DJ Prockop and DG Phinney. (1999). Marrow stro-mal cells migrate throughout forebrain and cerebellum, and they differentiate into astrocytes after injection into neonatal mouse brains. Proc Natl Acad Sci USA 96:10711-10716.
6. Woodbury D, EJ Schwarz, DJ Prockop and IB Black. (2000). Adult rat and human bone marrow stromal cells differentiate into neurons. J Neurosci Res 61:364-370.
7. Kolf CM, E Cho and RS Tuan. (2007). Mesenchymal stromal cells. Biology of adult mesenchymal stem cells: regulation of niche, self-renewal and differentiation. Arthritis Res Ther 9:204.
8. Sethe S, A Scutt and A Stolzing. (2006). Aging of mesenchymal stem cells. Ageing Res Rev 5:91-116.
9. Salli U, TE Fox, N Carkaci-Salli, A Sharma, GP Robertson, M Kester and K Vrana. (2008). Propagation of undifferentiated human embryonic stem cells with nano-liposomal ceramide. Stem Cells Dev. Epub ahead of print. doi:10.1089/scd.2007.0271.
10. Barthelery M, U Salli and KE Vrana. (2008). Enhanced nuclear proteomics. Proteomics 8:1832-1838.
11. Khoudoli GA, IM Porter, JJ Blow and JR Swedlow. (2004). Optimisation of the two-dimensional gel electrophoresis protocol using the Taguchi approach. Proteome Sci 2:6
12. Freeman WM, K Brebner, SG Amara, MS Reed, J Pohl and AG Phillips. (2005). Distinct proteomic prof les of amphetamine self-administration transitional states. Pharmacogenomics J 5:203-214.
13. Bowyer JF, AR Pogge, RR Delongchamp, JP O'Callaghan, KM Patel, KE Vrana and WM Freeman. (2007). A threshold neurotoxic amphetamine exposure inhibits parietal cortex expression of synaptic plasticity-related genes. Neuroscience 144:66-76.
14. Livak KJ and TD Schmittgen. (2001). Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) method. Methods 25:402-408.
15. Park HW, JS Shin and CW Kim. (2007). Proteome of mesenchymal stem cells. Proteomics 7:2881-2894.
16. Baharvand H, A Fathi, HD van, GH Salekdeh. (2007). Concise review: trends in stem cell proteomics. Stem Cells 25:1888-1903.
17. Barthelery M, U Salli and KE Vrana. (2007). Nuclear proteomics and directed differentiation of embryonic stem cells. Stem Cells Dev 16:905-920.
18. Gallant P. (2007). Control of transcription by Pontin and Reptin. Trends Cell Biol 17:187-192.
19. Bellosta P, T Hulf, DS Balla, F Usseglio, J Pradel, D Aragnol and P Gallant. (2005). Myc interacts genetically with Tip48/ Reptin and Tip49/Pontin to control growth and proliferation during Drosophila development. Proc Natl Acad Sci USA 102:11799-11804.
20. Bauer A, S Chauvet, O Huber, F Usseglio, U Rothbacher, D Aragnol, R Kemler and J Pradel. (2000). Pontin52 and reptin52 function as antagonistic regulators of beta-catenin signalling activity. EMBO J 19:6121-6130.
21. Cho SG, A Bhoumik, L Broday, V Ivanov, B Rosenstein and Z Ronai. (2001). TIP49b, a regulator of activating transcription factor 2 response to stress and DNA damage. Mol Cell Biol 21:8398-8413.
22. Kanemaki M, Y Makino, T Yoshida, T Kishimoto, A Koga, K Yamamoto, M Yamamoto, V Moncollin, JM Egly, M Muramatsu and T Tamura. (1997). Molecular cloning of a rat 49-kDa TBP-interacting protein (TIP49) that is highly homologous to the bacterial RuvB. Biochem Biophys Res Commun 235:64-68.
23. Rottbauer W, AJ Saurin, H Lickert, X Shen, CG Burns, ZG Wo, R Kemler, R Kingston, C Wu and M Fishman. (2002). Reptin and pontin antagonistically regulate heart growth in zebraf sh embr yos. Cel l 111:661- 672.
24. Chauvet S, F Usseglio, D Aragnol and J Pradel. (2005). Analysis of paralogous pontin and reptin gene expression during mouse development. Dev Genes Evol 215:575-579.
25. Shen X, G Mizuguchi, A Hamiche and C Wu. (2000). A chro-matin remodelling complex involved in transcription and DNA processing. Nature 406:541-544.
26. Ikura T, VV Ogryzko, M Grigoriev, R Groisman, J Wang, M Horikoshi, R Scully, J Qin and Y Nakatani. (2000). Involvement of the TIP60 histone acetylase complex in DNA repair and apoptosis. Cell 102:463-473.
27. Etard C, D Gradl, M Kunz, M Eilers and D Wedlich. (2005). Pontin and Reptin regulate cell proliferation in early Xenopus embryos in collaboration with c-Myc and Miz-1. Mech Dev 122:545-556.
28. Lim CR, Y Kimata, H Ohdate, T Kokubo, N Kikuchi, T Horigome and K Kohno. (2000). The Saccharomyces cerevisiae RuvB-like protein, Tih2p, is required for cell cycle progression and RNA polymerase II-directed transcription. J Biol Chem 275:22409-22417.
29. Ohdate H, CR Lim, T Kokubo, K Matsubara, Y Kimata and K Kohno. (2003). Impairment of the DNA binding activity of the TATA-binding protein renders the transcriptional function of Rvb2p/Tih2p, the yeast RuvB-like protein, essential for cell growth. J Biol Chem 278:14647-14656.
30. Picard D. (2002). Heat-shock protein 90, a chaperone for folding and regulation. Cell Mol Life Sci 59:1640-1648.
31. Borkovich KA, FW Farrelly, DB Finkelstein, J Taulien, S Lindquist. (1989). hsp82 is an essential protein that is required in higher concentrations for growth of cells at higher temperatures. Mol Cell Biol 9:3919-3930.
32. Pearl LH, C Prodromou and P Workman. (2008). The Hsp90 molecular chaperone: an open and shut case for treatment. Biochem J 410:439-453.
33. Zhao R, M Davey, YC Hsu, P Kaplanek, A Tong, AB Parsons, N Krogan, G Cagney, D Mai, J Greenblatt, C Boone, A Emili and WA Houry. (2005). Navigating the chaperone network: an integrative map of physical and genetic interactions mediated by the hsp90 chaperone. Cell 120:715-727.
34. Etheridge SL, GJ Spencer, DJ Heath and PG Genever. (2004). Expression prof ling and functional analysis of wnt signaling mechanisms in mesenchymal stem cells. Stem Cells 22:849-860.
35. Reya T, AW Duncan, L Ailles, J Domen, DC Scherer, K Willert, L Hintz, R Nusse and IL Weissman. (2003). A role for Wnt signalling in self-renewal of haematopoietic stem cells. Nature 423:409-414.
36. Rho JY, K Yu, JS Han, JI Chae, DB Koo, HS Yoon, SY Moon, KK Lee and YM Han. (2006). Transcriptional prof ling of the devel-opmentally important signalling pathways in human embryonic stem cells. Hum Reprod 21:405-412.
37. Sato N, L Meijer, L Skaltsounis, P Greengard and AH Brivanlou. (2004). Maintenance of pluripotency in human and mouse embryonic stem cells through activation of Wnt signaling by a pharmacological GSK-3-specif c inhibitor. Nat Med 10:55-63.
38. Watt FM, M Frye and SA Benitah. (2008). MYC in mammalian epidermis: how can an oncogene stimulate differentiation? Nat Rev Cancer 8:234-242.
39. Sumi T, N Tsuneyoshi, N Nakatsuji and H Suemori. (2007). Apoptosis and differentiation of human embryonic stem cells induced by sustained activation of c-Myc. Oncogene 26:5564-5576.
40. Grandori C, SM Cowley, LP James and RN Eisenman. (2000). The Myc/Max/Mad network and the transcriptional control of cell behavior. Annu Rev Cell Dev Biol 16:653-699.
41. Davis AC, M Wims, GD Spotts, SR Hann and A Bradley. (1993). A null c-myc mutation causes lethality before 10.5 days of gestation in homozygotes and reduced fertility in heterozygous female mice. Genes Dev 7:671-682.
42. Wood MA, SB McMahon and MD Cole. (2000). An ATPase/heli-case complex is an essential cofactor for oncogenic transformation by c-Myc. Mol Cell 5:321-330.
43. Knoepf er PS, XY Zhang, PF Cheng, PR Gafken, SB McMahon and RN Eisenman. (2006). Myc inf uences global chromatin structure. EMBO J 25:2723-2734.
44. Amati B, SR Frank, D Donjerkovic and S Taubert. (2001). Function of the c-Myc oncoprotein in chromatin remodeling and transcription. Biochim Biophys Acta 1471:M135-M145.
45. Frank SR, T Parisi, S Taubert, P Fernandez, M Fuchs, HM Chan, DM Livingston and B Amati. (2003). MYC recruits the TIP60 histone acetyltransferase complex to chromatin. EMBO Rep 4:575-580.
46. Yu J, MA Vodyanik, K Smuga-Otto, J ntosiewicz-Bourget, JL Frane, S Tian, J Nie, GA Jonsdottir, V Ruotti, R Stewart, II Slukvin and JA Thomson. (2007). Induced pluripotent stem cell lines derived from human somatic cells. Science 318:1917-1920.
47. Park IH, R Zhao, JA West, A Yabuuchi, H Huo, TA Ince, PH Lerou, MW Lensch and GQ Daley. (2007). Reprogramming of human somatic cells to pluripotency with def ned factors. N a t u r e 4 51:141-14 6.
48. Takahashi K, K Tanabe, M Ohnuki, M Narita, T Ichisaka, K Tomoda and S Yamanaka. (2007). Induction of pluripotent stem cells from adult human fibroblasts by def ned factors. Cell 131:861-872.
49. Hanna J, S Markoulaki, P Schorderet, BW Carey, C Beard, M Wernig, MP Creyghton, EJ Steine, JP Cassady, R Foreman, CJ Lengner, JA Dausman and R Jaenisch. (2008). Direct reprogram-ming of terminally differentiated mature B lymphocytes to pluripotency. Cell 133:250-264.
50. Stadtfeld M, K Brennand and K Hochedlinger. (2008). Reprogramming of pancreatic beta cells into induced pluripo-tent stem cells. Curr Biol 18:890-894.