-
1
-
-
33751520430
-
Natural selection on human microRNA binding sites inferred from SNP data
-
Chen K, Rajewsky N (2006) Natural selection on human microRNA binding sites inferred from SNP data. Nat Genet 38: 1452-1456.
-
(2006)
Nat Genet
, vol.38
, pp. 1452-1456
-
-
Chen, K.1
Rajewsky, N.2
-
2
-
-
10944230834
-
Intraspecies sequence comparisons for annotating genomes
-
Boffelli D, Weer C, Weng L, Lewis K, Shoukry M, et al. (2004) Intraspecies sequence comparisons for annotating genomes. Genome Res 14: 2406-2411.
-
(2004)
Genome Res
, vol.14
, pp. 2406-2411
-
-
Boffelli, D.1
Weer, C.2
Weng, L.3
Lewis, K.4
Shoukry, M.5
-
3
-
-
19344367734
-
Single nucleotide polymorphism-based validation of exonic splicing enhancers
-
Fairbrother W, Holste D, Burge C, Sharp P (2004) Single nucleotide polymorphism-based validation of exonic splicing enhancers. PLoS Biol 2: E268.
-
(2004)
PLoS Biol
, vol.2
-
-
Fairbrother, W.1
Holste, D.2
Burge, C.3
Sharp, P.4
-
4
-
-
33847665108
-
Human polymorphism at microRNAs and microRNA target sites
-
Saunders M, Liang H, Li W (2007) Human polymorphism at microRNAs and microRNA target sites. Proc Natl Acad Sci 104: 3300-3305.
-
(2007)
Proc Natl Acad Sci
, vol.104
, pp. 3300-3305
-
-
Saunders, M.1
Liang, H.2
Li, W.3
-
5
-
-
34748821761
-
The role of site accessibility in microRNA target recognition
-
Kertesz M, Iovino N, Unnerstall U, Gaul U, Segal E (2007) The role of site accessibility in microRNA target recognition. Nat Genet 39: 1278-1284.
-
(2007)
Nat Genet
, vol.39
, pp. 1278-1284
-
-
Kertesz, M.1
Iovino, N.2
Unnerstall, U.3
Gaul, U.4
Segal, E.5
-
6
-
-
20944450160
-
Combinatorial microRNA target predictions
-
Krek A, Grun D, Poy M, Wolf R, Rosenberg L, et al. (2005) Combinatorial microRNA target predictions. Nat Genet 37: 495-500.
-
(2005)
Nat Genet
, vol.37
, pp. 495-500
-
-
Krek, A.1
Grun, D.2
Poy, M.3
Wolf, R.4
Rosenberg, L.5
-
7
-
-
33644756532
-
A genome-wide map of conserved microRNA targets in C. elegans
-
Lall S, Grun D, Krek A, Chen K, Wang Y, et al. (2006) A genome-wide map of conserved microRNA targets in C. elegans. Curr Biol 16: 460-471.
-
(2006)
Curr Biol
, vol.16
, pp. 460-471
-
-
Lall, S.1
Grun, D.2
Krek, A.3
Chen, K.4
Wang, Y.5
-
8
-
-
36049018312
-
Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures
-
Stark A, Lin M, Kheradpour P, Pedersen J, Parts L, et al. (2007) Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures. Nature 450: 219-232.
-
(2007)
Nature
, vol.450
, pp. 219-232
-
-
Stark, A.1
Lin, M.2
Kheradpour, P.3
Pedersen, J.4
Parts, L.5
-
9
-
-
35948940895
-
Population Genomics: Whole-Genome Analysis of Polymorphism and Divergence in Drosophila simulans
-
Begun D, Holloway A, Stevens K, Hillier L, Poh Y, et al. (2007) Population Genomics: Whole-Genome Analysis of Polymorphism and Divergence in Drosophila simulans. PLoS Biol 5: e310.
-
(2007)
PLoS Biol
, vol.5
-
-
Begun, D.1
Holloway, A.2
Stevens, K.3
Hillier, L.4
Poh, Y.5
-
11
-
-
33645798112
-
Genome-wide identification of human functional DNA using a neutral indel model
-
Lunter G, Ponting C, Hein J (2006) Genome-wide identification of human functional DNA using a neutral indel model. PLoS Comput Biol 2: e5.
-
(2006)
PLoS Comput Biol
, vol.2
-
-
Lunter, G.1
Ponting, C.2
Hein, J.3
-
12
-
-
48249150513
-
Adaptive evolution of newly-emerged microRNA genes in Drosophila
-
Lu J, Fu Y, Kumar S, Shen Y, Zeng K, et al. (2008) Adaptive evolution of newly-emerged microRNA genes in Drosophila. Mol Biol Evol 25: 929-938.
-
(2008)
Mol Biol Evol
, vol.25
, pp. 929-938
-
-
Lu, J.1
Fu, Y.2
Kumar, S.3
Shen, Y.4
Zeng, K.5
-
14
-
-
33745700209
-
Sequence variations of microRNAs in human cancer: Alterations in predicted secondary structure do not affect processing
-
Diederichs S, Haber D (2006) Sequence variations of microRNAs in human cancer: alterations in predicted secondary structure do not affect processing. Cancer Res 66: 6097-6104.
-
(2006)
Cancer Res
, vol.66
, pp. 6097-6104
-
-
Diederichs, S.1
Haber, D.2
-
15
-
-
48249142558
-
Sequence variation of microRNAs and their binding sites in Arabidopsis thaliana
-
Ehrenreich I, Purugganan M (2008) Sequence variation of microRNAs and their binding sites in Arabidopsis thaliana. Plant Physiol 146: 1974-1982.
-
(2008)
Plant Physiol
, vol.146
, pp. 1974-1982
-
-
Ehrenreich, I.1
Purugganan, M.2
-
16
-
-
12544255565
-
Recognition and cleavage of primary microRNA precursors by the nuclear processing enzyme Drosha
-
Zeng Y, Yi R, Cullen B (2005) Recognition and cleavage of primary microRNA precursors by the nuclear processing enzyme Drosha. EMBO J 24: 138-148.
-
(2005)
EMBO J
, vol.24
, pp. 138-148
-
-
Zeng, Y.1
Yi, R.2
Cullen, B.3
-
17
-
-
54449097862
-
Computational prediction of RNA structural motifs involved in posttranscriptional regulatory processes
-
Rabani M, Kertesz M, Segal E (2008) Computational prediction of RNA structural motifs involved in posttranscriptional regulatory processes. Proc Natl Acad Sci 105: 14885-90.
-
(2008)
Proc Natl Acad Sci
, vol.105
, pp. 14885-14890
-
-
Rabani, M.1
Kertesz, M.2
Segal, E.3
-
18
-
-
0026428610
-
Adaptive protein evolution at the Adh locus in Drosophila
-
McDonald J, Kreitman M (1991) Adaptive protein evolution at the Adh locus in Drosophila. Nature 351: 652-654.
-
(1991)
Nature
, vol.351
, pp. 652-654
-
-
McDonald, J.1
Kreitman, M.2
-
19
-
-
33750622610
-
Minor shift in background substitutional patterns in the Drosophila saltans and willistoni lineages is insufficient to explain GC content of coding sequences
-
Singh N, Arndt P, Petrov D (2006) Minor shift in background substitutional patterns in the Drosophila saltans and willistoni lineages is insufficient to explain GC content of coding sequences. BMC Biol 4: 37.
-
(2006)
BMC Biol
, vol.4
, pp. 37
-
-
Singh, N.1
Arndt, P.2
Petrov, D.3
-
20
-
-
49949116902
-
The impact of microRNAs on protein output
-
Baek D, Villén J, Shin C, Camargo FD, Gygi SP, et al. (2008) The impact of microRNAs on protein output. Nature 455: 64-71.
-
(2008)
Nature
, vol.455
, pp. 64-71
-
-
Baek, D.1
Villén, J.2
Shin, C.3
Camargo, F.D.4
Gygi, S.P.5
-
21
-
-
49949117302
-
Widespread changes in protein synthesis induced by microRNAs
-
Selbach M, Schwanhaeusser B, Thierfelder N, Fang Z, Khanin R, et al. (2008) Widespread changes in protein synthesis induced by microRNAs. Nature 455: 58-63.
-
(2008)
Nature
, vol.455
, pp. 58-63
-
-
Selbach, M.1
Schwanhaeusser, B.2
Thierfelder, N.3
Fang, Z.4
Khanin, R.5
-
22
-
-
4644237189
-
Fast and effective prediction of microRNA/target duplexes
-
Rehmsmeier M, Steffen P, Hoechsmann M, Giegerich R (2004) Fast and effective prediction of microRNA/target duplexes. RNA 10: 1507-1517.
-
(2004)
RNA
, vol.10
, pp. 1507-1517
-
-
Rehmsmeier, M.1
Steffen, P.2
Hoechsmann, M.3
Giegerich, R.4
-
23
-
-
34250682267
-
Deep conservation of microRNA-target relationships and 3′UTR motifs in vertebrates, flies, and nematodes
-
Chen K, Rajewsky N (2007) Deep conservation of microRNA-target relationships and 3′UTR motifs in vertebrates, flies, and nematodes. Cold Spring Harb Symp Quant Biol 71: 149-156.
-
(2007)
Cold Spring Harb Symp Quant Biol
, vol.71
, pp. 149-156
-
-
Chen, K.1
Rajewsky, N.2
-
24
-
-
11844278458
-
Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
-
Lewis B, Burge C, Bartel D (2005) Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 120: 15-20.
-
(2005)
Cell
, vol.120
, pp. 15-20
-
-
Lewis, B.1
Burge, C.2
Bartel, D.3
-
25
-
-
15244358503
-
Systematic discovery of regulatory motifs in human promoters and 3′ UTRs by comparison of several mammals
-
Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, et al. (2005) Systematic discovery of regulatory motifs in human promoters and 3′ UTRs by comparison of several mammals. Nature 434: 338-45.
-
(2005)
Nature
, vol.434
, pp. 338-345
-
-
Xie, X.1
Lu, J.2
Kulbokas, E.J.3
Golub, T.R.4
Mootha, V.5
-
26
-
-
13944282215
-
Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs
-
Lim L, Lau N, Garrett-Engele P, Grimson A, Schelter J, et al. (2005) Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs. Nature 433: 769-773.
-
(2005)
Nature
, vol.433
, pp. 769-773
-
-
Lim, L.1
Lau, N.2
Garrett-Engele, P.3
Grimson, A.4
Schelter, J.5
-
27
-
-
57049148002
-
Molecular characterization of human Argonaute-containing ribonucleoprotein complexes and their bound target mRNAs
-
Landthaler M, Gaidatzis D, Rothballer A, Chen PY, Soll SJ, et al. (2008) Molecular characterization of human Argonaute-containing ribonucleoprotein complexes and their bound target mRNAs. RNA 14: 2580-96.
-
(2008)
RNA
, vol.14
, pp. 2580-2596
-
-
Landthaler, M.1
Gaidatzis, D.2
Rothballer, A.3
Chen, P.Y.4
Soll, S.J.5
-
28
-
-
37648999735
-
A biochemical approach to identifying microRNA targets
-
Karginov FV, Conaco C, Xuan Z, Schmidt BH, Parker JS, et al. (2007) A biochemical approach to identifying microRNA targets. Proc Natl Acad Sci 104: 19291-6.
-
(2007)
Proc Natl Acad Sci
, vol.104
, pp. 19291-19296
-
-
Karginov, F.V.1
Conaco, C.2
Xuan, Z.3
Schmidt, B.H.4
Parker, J.S.5
-
29
-
-
58149203235
-
The database of experimentally supported targets: A functional update of TarBase
-
Papadopoulos G, Reczko M, Simossis V, Sethupathy P, Hatzigeorgiou A (2009) The database of experimentally supported targets: a functional update of TarBase. Nucleic Acids Res 37: D155-158.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Papadopoulos, G.1
Reczko, M.2
Simossis, V.3
Sethupathy, P.4
Hatzigeorgiou, A.5
-
30
-
-
27544474337
-
Ascertainment bias in studies of human genome-wide polymorphism
-
Clark A, Hubisz M, Bustamante C, Williamson S, Nielsen R (2005) Ascertainment bias in studies of human genome-wide polymorphism. Genome Res 15: 1496-1502.
-
(2005)
Genome Res
, vol.15
, pp. 1496-1502
-
-
Clark, A.1
Hubisz, M.2
Bustamante, C.3
Williamson, S.4
Nielsen, R.5
-
32
-
-
37249025294
-
Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
-
Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, et al. (2007) Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes. Genome Res 17: 1865-1879.
-
(2007)
Genome Res
, vol.17
, pp. 1865-1879
-
-
Stark, A.1
Kheradpour, P.2
Parts, L.3
Brennecke, J.4
Hodges, E.5
-
33
-
-
27344456287
-
microRNA target predictions across seven Drosophila species and comparison to mammalian targets
-
Grun D, Wang Y, Langenberger D, Gunsalus K, Rajewsky N (2005) microRNA target predictions across seven Drosophila species and comparison to mammalian targets. PLoS Comput Biol 1: e13.
-
(2005)
PLoS Comput Biol
, vol.1
-
-
Grun, D.1
Wang, Y.2
Langenberger, D.3
Gunsalus, K.4
Rajewsky, N.5
-
34
-
-
33846078622
-
The UCSC genome browser database: Update 2007
-
Kuhn R, Karolchik D, Zweig A, Trumbower H, Thomas D, et al. (2007) The UCSC genome browser database: update 2007. Nucleic Acids Res 35: D668-673.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Kuhn, R.1
Karolchik, D.2
Zweig, A.3
Trumbower, H.4
Thomas, D.5
|