-
1
-
-
0028861418
-
The PHD finger: Implications for chromatin-mediated transcriptional regulation
-
Aasland, R., Gibson, T.J. Stewart, A.F. (1995) The PHD finger: implications for chromatin-mediated transcriptional regulation. Trends Biochem. Sci. 20, 56 59.
-
(1995)
Trends Biochem. Sci.
, vol.20
, pp. 56-59
-
-
Aasland, R.1
Gibson, T.J.2
Stewart, A.F.3
-
2
-
-
33645820226
-
The Arabidopsis homolog of trithorax, ATX1, binds phosphatidylinositol 5-phosphate, and the two regulate a common set of target genes
-
Alvarez-Venegas, R., Sadder, M., Hlavacka, A. et al. (2006) The Arabidopsis homolog of trithorax, ATX1, binds phosphatidylinositol 5-phosphate, and the two regulate a common set of target genes. Proc. Natl Acad. Sci. USA, 103, 6049 6054.
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 6049-6054
-
-
Alvarez-Venegas, R.1
Sadder, M.2
Hlavacka, A.3
-
3
-
-
32144432437
-
The SWISS-MODEL workspace: A web-based environment for protein structure homology modelling
-
DOI 10.1093/bioinformatics/bti770
-
Arnold, K., Bordoli, L., Kopp, J. Schwede, T. (2006) The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling. Bioinformatics, 22, 195 201. (Pubitemid 43205406)
-
(2006)
Bioinformatics
, vol.22
, Issue.2
, pp. 195-201
-
-
Arnold, K.1
Bordoli, L.2
Kopp, J.3
Schwede, T.4
-
4
-
-
34249026300
-
High-Resolution Profiling of Histone Methylations in the Human Genome
-
DOI 10.1016/j.cell.2007.05.009, PII S0092867407006009
-
Barski, A., Cuddapah, S., Cui, K., Roh, T.Y., Schones, D.E., Wang, Z., Wei, G., Chepelev, I. Zhao, K. (2007) High-resolution profiling of histone methylations in the human genome. Cell, 129, 823 837. (Pubitemid 46802390)
-
(2007)
Cell
, vol.129
, Issue.4
, pp. 823-837
-
-
Barski, A.1
Cuddapah, S.2
Cui, K.3
Roh, T.-Y.4
Schones, D.E.5
Wang, Z.6
Wei, G.7
Chepelev, I.8
Zhao, K.9
-
5
-
-
0032405763
-
Alfin1, a novel zinc-finger protein in alfalfa roots that binds to promoter elements in the salt-inducible MsPRP2 gene
-
DOI 10.1023/A:1006081926699
-
Bastola, D.R., Pethe, V.V. Winicov, I. (1998) Alfin1, a novel zinc-finger protein in alfalfa roots that binds to promoter elements in the salt-inducible MsPRP2 gene. Plant Mol. Biol. 38, 1123 1135. (Pubitemid 29000324)
-
(1998)
Plant Molecular Biology
, vol.38
, Issue.6
, pp. 1123-1135
-
-
Bastola, D.R.1
Pethe, V.V.2
Winicov, I.3
-
6
-
-
30944452960
-
The PHD finger, a nuclear protein-interaction domain
-
DOI 10.1016/j.tibs.2005.11.001, PII S0968000405003245
-
Bienz, M. (2006) The PHD finger, a nuclear protein-interaction domain. Trends Biochem. Sci. 31, 35 40. (Pubitemid 43117541)
-
(2006)
Trends in Biochemical Sciences
, vol.31
, Issue.1
, pp. 35-40
-
-
Bienz, M.1
-
7
-
-
34249846686
-
NucPred - Predicting nuclear localization of proteins
-
DOI 10.1093/bioinformatics/btm066
-
Brameier, M., Krings, A. MacCallum, R.M. (2007) NucPred - predicting nuclear localization of proteins. Bioinformatics, 23, 1159 1160. (Pubitemid 47050569)
-
(2007)
Bioinformatics
, vol.23
, Issue.9
, pp. 1159-1160
-
-
Brameier, M.1
Krings, A.2
MacCallum, R.M.3
-
8
-
-
51349134500
-
The crystal structure of the ING5 PHD finger in complex with an H3K4me3 histone peptide
-
Champagne, K.S., Saksouk, N., Pena, P.V., Johnson, K., Ullah, M., Yang, X.J., Cote, J. Kutateladze, T.G. (2008) The crystal structure of the ING5 PHD finger in complex with an H3K4me3 histone peptide. Proteins, 72, 1371 1376.
-
(2008)
Proteins
, vol.72
, pp. 1371-1376
-
-
Champagne, K.S.1
Saksouk, N.2
Pena, P.V.3
Johnson, K.4
Ullah, M.5
Yang, X.J.6
Cote, J.7
Kutateladze, T.G.8
-
9
-
-
35448970561
-
RNAi-mediated gene silencing reveals involvement of Arabidopsis chromatin-related genes in Agrobacterium-mediated root transformation
-
DOI 10.1073/pnas.0706986104
-
Crane, Y.M. Gelvin, S.B. (2007) RNAi-mediated gene silencing reveals involvement of Arabidopsis chromatin-related genes in Agrobacterium-mediated root transformation. Proc. Natl Acad. Sci. USA, 104, 15156 15161. (Pubitemid 47619609)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.38
, pp. 15156-15161
-
-
Ma Crane, Y.1
Gelvin, S.B.2
-
10
-
-
32644481938
-
Genome-wide identification and testing of superior reference genes for transcript normalization in arabidopsis
-
DOI 10.1104/pp.105.063743
-
Czechowski, T., Stitt, M., Altmann, T., Udvardi, M.K. Scheible, W.R. (2005) Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis. Plant Physiol. 139, 5 17. (Pubitemid 43951587)
-
(2005)
Plant Physiology
, vol.139
, Issue.1
, pp. 5-17
-
-
Czechowski, T.1
Stitt, M.2
Altmann, T.3
Udvardi, M.K.4
Scheible, W.-R.5
-
11
-
-
27144513515
-
The genes encoding Arabidopsis ORC subunits are E2F targets and the two ORC1 genes are differently expressed in proliferating and endoreplicating cells
-
DOI 10.1093/nar/gki854
-
Diaz-Trivino, S., del Mar Castellano, M., de la Paz Sanchez, M., Ramirez-Parra, E., Desvoyes, B. Gutierrez, C. (2005) The genes encoding Arabidopsis ORC subunits are E2F targets and the two ORC1 genes are differently expressed in proliferating and endoreplicating cells. Nucleic Acids Res. 33, 5404 5414. (Pubitemid 41548807)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.17
, pp. 5404-5414
-
-
Diaz-Trivino, S.1
Del Mar Castellano, M.2
De La Paz Sanchez, M.3
Ramirez-Parra, E.4
Desvoyes, B.5
Gutierrez, C.6
-
12
-
-
35848955414
-
In vitro specificities of Arabidopsis co-activator histone acetyltransferases: Implications for histone hyperacetylation in gene activation
-
DOI 10.1111/j.1365-313X.2007.03264.x
-
Earley, K.W., Shook, M.S., Brower-Toland, B., Hicks, L. Pikaard, C.S. (2007) In vitro specificities of Arabidopsis co-activator histone acetyltransferases: implications for histone hyperacetylation in gene activation. Plant J. 52, 615 626. (Pubitemid 350060589)
-
(2007)
Plant Journal
, vol.52
, Issue.4
, pp. 615-626
-
-
Earley, K.W.1
Shook, M.S.2
Brower-Toland, B.3
Hicks, L.4
Pikaard, C.S.5
-
13
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
DOI 10.1093/nar/gkh340
-
Edgar, R.C. (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32, 1792 1797. (Pubitemid 38832724)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.5
, pp. 1792-1797
-
-
Edgar, R.C.1
-
14
-
-
33847133819
-
EDM2 is required for RPP7-dependent disease resistance in Arabidopsis and affects RPP7 transcript levels
-
DOI 10.1111/j.1365-313X.2006.02999.x
-
Eulgem, T., Tsuchiya, T., Wang, X.J., Beasley, B., Cuzick, A., Tor, M., Zhu, T., McDowell, J.M., Holub, E. Dangl, J.L. (2007) EDM2 is required for RPP7-dependent disease resistance in Arabidopsis and affects RPP7 transcript levels. Plant J. 49, 829 839. (Pubitemid 46279266)
-
(2007)
Plant Journal
, vol.49
, Issue.5
, pp. 829-839
-
-
Eulgem, T.1
Tsuchiya, T.2
Wang, X.-J.3
Beasley, B.4
Cuzick, A.5
Tor, M.6
Zhu, T.7
McDowell, J.M.8
Holub, E.9
Dangl, J.L.10
-
15
-
-
52049096640
-
The PHD domain of plant PIAS proteins mediates sumoylation of bromodomain GTE proteins
-
Garcia-Dominguez, M., March-Diaz, R. Reyes, J.C. (2008) The PHD domain of plant PIAS proteins mediates sumoylation of bromodomain GTE proteins. J. Biol. Chem. 283, 21469 21477.
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 21469-21477
-
-
Garcia-Dominguez, M.1
March-Diaz, R.2
Reyes, J.C.3
-
16
-
-
0029851765
-
Suppression of the novel growth inhibitor p33(ING1) promotes neoplastic transformation
-
DOI 10.1038/ng1296-415
-
Garkavtsev, I., Kazarov, A., Gudkov, A. Riabowol, K. (1996) Suppression of the novel growth inhibitor p33ING1 promotes neoplastic transformation. Nature Genet. 14, 415 420. (Pubitemid 26414585)
-
(1996)
Nature Genetics
, vol.14
, Issue.4
, pp. 415-420
-
-
Garkavtsev, I.1
Kazarov, A.2
Gudkov, A.3
Riabowol, K.4
-
17
-
-
0038784526
-
The PHD finger of the chromatin-associated protein ING2 functions as a nuclear phosphoinositide receptor
-
DOI 10.1016/S0092-8674(03)00480-X
-
Gozani, O., Karuman, P., Jones, D.R. et al. (2003) The PHD finger of the chromatin-associated protein ING2 functions as a nuclear phosphoinositide receptor. Cell, 114, 99 111. (Pubitemid 36859844)
-
(2003)
Cell
, vol.114
, Issue.1
, pp. 99-111
-
-
Gozani, O.1
Karuman, P.2
Jones, D.R.3
Ivanov, D.4
Cha, J.5
Lugovskoy, A.A.6
Baird, C.L.7
Zhu, H.8
Field, S.J.9
Lessnick, S.L.10
Villasenor, J.11
Mehrotra, B.12
Chen, J.13
Rao, V.R.14
Brugge, J.S.15
Ferguson, C.G.16
Payrastre, B.17
Myszka, D.G.18
Cantley, L.C.19
Wagner, G.20
Divecha, N.21
Prestwich, G.D.22
Yuan, J.23
more..
-
18
-
-
33845872285
-
The PHD Finger Protein VRN5 Functions in the Epigenetic Silencing of Arabidopsis FLC
-
DOI 10.1016/j.cub.2006.11.052, PII S096098220602570X
-
Greb, T., Mylne, J.S., Crevillen, P., Geraldo, N., An, H., Gendall, A.R. Dean, C. (2007) The PHD finger protein VRN5 functions in the epigenetic silencing of Arabidopsis FLC. Curr. Biol. 17, 73 78. (Pubitemid 46027584)
-
(2007)
Current Biology
, vol.17
, Issue.1
, pp. 73-78
-
-
Greb, T.1
Mylne, J.S.2
Crevillen, P.3
Geraldo, N.4
An, H.5
Gendall, A.R.6
Dean, C.7
-
19
-
-
10344251489
-
Phylogenetic analysis of the ING family of PHD finger proteins
-
DOI 10.1093/molbev/msh256
-
He, G.H., Helbing, C.C., Wagner, M.J., Sensen, C.W. Riabowol, K. (2005) Phylogenetic analysis of the ING family of PHD finger proteins. Mol. Biol. Evol. 22, 104 116. (Pubitemid 39628547)
-
(2005)
Molecular Biology and Evolution
, vol.22
, Issue.1
, pp. 104-116
-
-
He, G.H.Y.1
Helbing, C.C.2
Wagner, M.J.3
Sensen, C.W.4
Riabowol, K.5
-
20
-
-
48149105342
-
Structural insight into the recognition of the H3K4me3 mark by the TFIID subunit TAF3
-
van Ingen, H., van Schaik, F.M., Wienk, H., Ballering, J., Rehmann, H., Dechesne, A.C., Kruijzer, J.A., Liskamp, R.M., Timmers, H.T. Boelens, R. (2008) Structural insight into the recognition of the H3K4me3 mark by the TFIID subunit TAF3. Structure, 16, 1245 1256.
-
(2008)
Structure
, vol.16
, pp. 1245-1256
-
-
Van Ingen, H.1
Van Schaik, F.M.2
Wienk, H.3
Ballering, J.4
Rehmann, H.5
Dechesne, A.C.6
Kruijzer, J.A.7
Liskamp, R.M.8
Timmers, H.T.9
Boelens, R.10
-
21
-
-
33947302685
-
The X-Linked Mental Retardation Gene SMCX/JARID1C Defines a Family of Histone H3 Lysine 4 Demethylases
-
DOI 10.1016/j.cell.2007.02.017, PII S0092867407002000
-
Iwase, S., Lan, F., Bayliss, P., de la Torre-Ubieta, L., Huarte, M., Qi, H.H., Whetstine, J.R., Bonni, A., Roberts, T.M. Shi, Y. (2007) The X-linked mental retardation gene SMCX-JARID1C defines a family of histone H3 lysine 4 demethylases. Cell, 128, 1077 1088. (Pubitemid 46437259)
-
(2007)
Cell
, vol.128
, Issue.6
, pp. 1077-1088
-
-
Iwase, S.1
Lan, F.2
Bayliss, P.3
De La Torre-Ubieta, L.4
Huarte, M.5
Qi, H.H.6
Whetstine Johnathan, R.7
Bonni, A.8
Roberts, T.M.9
Shi, Y.10
-
22
-
-
33749419255
-
The polybasic region that follows the plant homeodomain zinc finger 1 of Pf1 is necessary and sufficient for specific phosphoinositide binding
-
DOI 10.1074/jbc.M605624200
-
Kaadige, M.R. Ayer, D.E. (2006) The polybasic region that follows the plant homeodomain zinc finger 1 of Pf1 is necessary and sufficient for specific phosphoinositide binding. J. Biol. Chem. 281, 28831 28836. (Pubitemid 44507026)
-
(2006)
Journal of Biological Chemistry
, vol.281
, Issue.39
, pp. 28831-28836
-
-
Kaadige, M.R.1
Ayer, D.E.2
-
23
-
-
37849038263
-
ICBP90, a novel methyl K9 H3 binding protein linking protein ubiquitination with heterochromatin formation
-
Karagianni, P., Amazit, L., Qin, J. Wong, J. (2008) ICBP90, a novel methyl K9 H3 binding protein linking protein ubiquitination with heterochromatin formation. Mol. Cell. Biol. 28, 705 717.
-
(2008)
Mol. Cell. Biol.
, vol.28
, pp. 705-717
-
-
Karagianni, P.1
Amazit, L.2
Qin, J.3
Wong, J.4
-
24
-
-
33847076849
-
Chromatin Modifications and Their Function
-
DOI 10.1016/j.cell.2007.02.005, PII S0092867407001845
-
Kouzarides, T. (2007) Chromatin modifications and their function. Cell, 128, 693 705. (Pubitemid 46273577)
-
(2007)
Cell
, vol.128
, Issue.4
, pp. 693-705
-
-
Kouzarides, T.1
-
25
-
-
34547793043
-
Recognition of unmethylated histone H3 lysine 4 links BHC80 to LSD1-mediated gene repression
-
DOI 10.1038/nature06034, PII NATURE06034
-
Lan, F., Collins, R.E., De Cegli, R., Alpatov, R., Horton, J.R., Shi, X., Gozani, O., Cheng, X. Shi, Y. (2007) Recognition of unmethylated histone H3 lysine 4 links BHC80 to LSD1-mediated gene repression. Nature, 448, 718 722. (Pubitemid 47236862)
-
(2007)
Nature
, vol.448
, Issue.7154
, pp. 718-722
-
-
Lan, F.1
Collins, R.E.2
De Cegli, R.3
Alpatov, R.4
Horton, J.R.5
Shi, X.6
Gozani, O.7
Cheng, X.8
Shi, Y.9
-
26
-
-
33745809637
-
Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF
-
DOI 10.1038/nature04802, PII NATURE04802
-
Li, H., Ilin, S., Wang, W., Duncan, E.M., Wysocka, J., Allis, C.D. Patel, D.J. (2006) Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF. Nature, 442, 91 95. (Pubitemid 44064215)
-
(2006)
Nature
, vol.442
, Issue.7098
, pp. 91-95
-
-
Li, H.1
Ilin, S.2
Wang, W.3
Duncan, E.M.4
Wysocka, J.5
Allis, C.D.6
Patel, D.J.7
-
27
-
-
42549090878
-
High-resolution mapping of epigenetic modifications of the rice genome uncovers interplay between DNA methylation, histone methylation, and gene expression
-
DOI 10.1105/tpc.107.056879
-
Li, X., Wang, X., He, K. et al. (2008) High-resolution mapping of epigenetic modifications of the rice genome uncovers interplay between DNA methylation, histone methylation, and gene expression. Plant Cell, 20, 259 276. (Pubitemid 352844011)
-
(2008)
Plant Cell
, vol.20
, Issue.2
, pp. 259-276
-
-
Li, X.1
Wang, X.2
He, K.3
Ma, Y.4
Su, N.5
He, H.6
Stolc, V.7
Tongprasit, W.8
Jin, W.9
Jiang, J.10
Terzaghi, W.11
Li, S.12
Xing, W.D.13
-
28
-
-
0034106128
-
Three yeast proteins related to the human candidate tumor suppressor p33(ING1) are associated with histone acetyltransferase activities
-
DOI 10.1128/MCB.20.11.3807-3816.2000
-
Loewith, R., Meijer, M., Lees-Miller, S.P., Riabowol, K. Young, D. (2000) Three yeast proteins related to the human candidate tumor suppressor p33(ING1) are associated with histone acetyltransferase activities. Mol. Cell. Biol. 20, 3807 3816. (Pubitemid 30314480)
-
(2000)
Molecular and Cellular Biology
, vol.20
, Issue.11
, pp. 3807-3816
-
-
Loewith, R.1
Meijer, M.2
Lees-Miller, S.P.3
Riabowol, K.4
Young, D.5
-
29
-
-
1842411320
-
Crystal structure of the nucleosome core particle at 2.8 A resolution
-
DOI 10.1038/38444
-
Luger, K., Mader, A.W., Richmond, R.K., Sargent, D.F. Richmond, T.J. (1997) Crystal structure of the nucleosome core particle at 2.8 å resolution. Nature, 389, 251 260. (Pubitemid 27406632)
-
(1997)
Nature
, vol.389
, Issue.6648
, pp. 251-260
-
-
Luger, K.1
Mader, A.W.2
Richmond, R.K.3
Sargent, D.F.4
Richmond, T.J.5
-
30
-
-
33750328340
-
The Yng1p plant homeodomain finger is a methyl-histone binding module that recognizes lysine 4-methylated histone H3
-
DOI 10.1128/MCB.00573-06
-
Martin, D.G., Baetz, K., Shi, X., Walter, K.L., MacDonald, V.E., Wlodarski, M.J., Gozani, O., Hieter, P. Howe, L. (2006) The Yng1p plant homeodomain finger is a methyl-histone binding module that recognizes lysine 4-methylated histone H3. Mol. Cell. Biol. 26, 7871 7879. (Pubitemid 44630988)
-
(2006)
Molecular and Cellular Biology
, vol.26
, Issue.21
, pp. 7871-7879
-
-
Martin, D.G.E.1
Baetz, K.2
Shi, X.3
Walter, K.L.4
MacDonald, V.E.5
Wlodarski, M.J.6
Gozani, O.7
Hieter, P.8
Howe, L.9
-
31
-
-
37249041657
-
RAG2 PHD finger couples histone H3 lysine 4 trimethylation with V(D)J recombination
-
DOI 10.1038/nature06431, PII NATURE06431
-
Matthews, A.G., Kuo, A.J., Ramon-Maiques, S. et al. (2007) RAG2 PHD finger couples histone H3 lysine 4 trimethylation with V(D)J recombination. Nature, 450, 1106 1110. (Pubitemid 350273622)
-
(2007)
Nature
, vol.450
, Issue.7172
, pp. 1106-1110
-
-
Matthews, A.G.W.1
Kuo, A.J.2
Ramon-Maiques, S.3
Han, S.4
Champagne, K.S.5
Ivanov, D.6
Gallardo, M.7
Carney, D.8
Cheung, P.9
Ciccone, D.N.10
Walter, K.L.11
Utz, P.J.12
Shi, Y.13
Kutateladze, T.G.14
Yang, W.15
Gozani, O.16
Oettinger, M.A.17
-
32
-
-
33745713437
-
It takes a PHD to read the histone code
-
Mellor, J. (2006) It takes a PHD to read the histone code. Cell, 126, 22 24.
-
(2006)
Cell
, vol.126
, pp. 22-24
-
-
Mellor, J.1
-
33
-
-
21144455484
-
The Arabidopsis SUMO E3 ligase SIZ1 controls phosphate deficiency responses
-
DOI 10.1073/pnas.0500778102
-
Miura, K., Rus, A., Sharkhuu, A. et al. (2005) The Arabidopsis SUMO E3 ligase SIZ1 controls phosphate deficiency responses. Proc. Natl Acad. Sci. USA, 102, 7760 7765. (Pubitemid 40741043)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.21
, pp. 7760-7765
-
-
Miura, K.1
Rus, A.2
Sharkhuu, A.3
Yokoi, S.4
Karthikeyan, A.S.5
Raghothama, K.G.6
Baek, D.7
Koo, Y.D.8
Jin, J.B.9
Bressan, R.A.10
Yun, D.-J.11
Hasegawa, P.M.12
-
34
-
-
0033729179
-
The Arabidopsis PHD-finger protein SHL is required for proper development and fertility
-
Mussig, C., Kauschmann, A., Clouse, S.D. Altmann, T. (2000) The Arabidopsis PHD-finger protein SHL is required for proper development and fertility. Mol. Gen. Genet. 264, 363 370. (Pubitemid 30845785)
-
(2000)
Molecular and General Genetics
, vol.264
, Issue.4
, pp. 363-370
-
-
Mussig, C.1
Kauschmann, A.2
Clouse, S.D.3
Altmann, T.4
-
35
-
-
0035900741
-
Polycomb-like PHD fingers mediate conserved interaction with enhancer of zeste protein
-
O'Connell, S., Wang, L., Robert, S., Jones, C.A., Saint, R. Jones, R.S. (2001) Polycomb-like PHD fingers mediate conserved interaction with enhancer of zeste protein. J. Biol. Chem. 276, 43065 43073.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 43065-43073
-
-
O'Connell, S.1
Wang, L.2
Robert, S.3
Jones, C.A.4
Saint, R.5
Jones, R.S.6
-
36
-
-
0030772968
-
Cellular differentiation regulated by gibberellin in the Arabidopsis thaliana pickle mutant
-
DOI 10.1126/science.277.5322.91
-
Ogas, J., Cheng, J.C., Sung, Z.R. Somerville, C. (1997) Cellular differentiation regulated by gibberellin in the Arabidopsis thaliana pickle mutant. Science, 277, 91 94. (Pubitemid 27450653)
-
(1997)
Science
, vol.277
, Issue.5322
, pp. 91-94
-
-
Ogas, J.1
Cheng, J.-C.2
Sung, Z.R.3
Somerville, C.4
-
37
-
-
34547725157
-
DNMT3L connects unmethylated lysine 4 of histone H3 to de novo methylation of DNA
-
DOI 10.1038/nature05987, PII NATURE05987
-
Ooi, S.K., Qiu, C., Bernstein, E. et al. (2007) DNMT3L connects unmethylated lysine 4 of histone H3 to de novo methylation of DNA. Nature, 448, 714 717. (Pubitemid 47236857)
-
(2007)
Nature
, vol.448
, Issue.7154
, pp. 714-717
-
-
Ooi, S.K.T.1
Qiu, C.2
Bernstein, E.3
Li, K.4
Jia, D.5
Yang, Z.6
Erdjument-Bromage, H.7
Tempst, P.8
Lin, S.-P.9
Allis, C.D.10
Cheng, X.11
Bestor, T.H.12
-
38
-
-
45849137524
-
The autoimmune regulator PHD finger binds to non-methylated histone H3K4 to activate gene expression
-
Org, T., Chignola, F., Hetenyi, C. et al. (2008) The autoimmune regulator PHD finger binds to non-methylated histone H3K4 to activate gene expression. EMBO Rep. 9, 370 376.
-
(2008)
EMBO Rep.
, vol.9
, pp. 370-376
-
-
Org, T.1
Chignola, F.2
Hetenyi, C.3
-
39
-
-
47049087662
-
Molecular basis of histone H3K4me3 recognition by ING4
-
Palacios, A., Munoz, I.G., Pantoja-Uceda, D., Marcaida, M.J., Torres, D., Martin-Garcia, J.M., Luque, I., Montoya, G. Blanco, F.J. (2008) Molecular basis of histone H3K4me3 recognition by ING4. J. Biol. Chem. 283, 15956 15964.
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 15956-15964
-
-
Palacios, A.1
Munoz, I.G.2
Pantoja-Uceda, D.3
Marcaida, M.J.4
Torres, D.5
Martin-Garcia, J.M.6
Luque, I.7
Montoya, G.8
Blanco, F.J.9
-
40
-
-
33745818717
-
Molecular mechanism of histone H3K4me3 recognition by plant homeodomain of ING2
-
DOI 10.1038/nature04814, PII NATURE04814
-
Pena, P.V., Davrazou, F., Shi, X., Walter, K.L., Verkhusha, V.V., Gozani, O., Zhao, R. Kutateladze, T.G. (2006) Molecular mechanism of histone H3K4me3 recognition by plant homeodomain of ING2. Nature, 442, 100 103. (Pubitemid 44064217)
-
(2006)
Nature
, vol.442
, Issue.7098
, pp. 100-103
-
-
Pena, P.V.1
Davrazou, F.2
Shi, X.3
Walter, K.L.4
Verkhusha, V.V.5
Gozani, O.6
Zhao, R.7
Kutateladze, T.G.8
-
41
-
-
33646824880
-
AtMBD9: A protein with a methyl-CpG-binding domain regulates flowering time and shoot branching in Arabidopsis
-
DOI 10.1111/j.1365-313X.2006.02691.x
-
Peng, M., Cui, Y., Bi, Y.M. Rothstein, S.J. (2006) AtMBD9: a protein with a methyl-CpG-binding domain regulates flowering time and shoot branching in Arabidopsis. Plant J. 46, 282 296. (Pubitemid 43773567)
-
(2006)
Plant Journal
, vol.46
, Issue.2
, pp. 282-296
-
-
Peng, M.1
Cui, Y.2
Bi, Y.-M.3
Rothstein, S.J.4
-
42
-
-
19244376395
-
EARLY BOLTING IN SHORT DAYS is related to chromatin remodeling factors and regulates flowering in Arabidopsis by repressing FT
-
DOI 10.1105/tpc.012153
-
Pineiro, M., Gomez-Mena, C., Schaffer, R., Martinez-Zapater, J.M. Coupland, G. (2003) EARLY BOLTING IN SHORT DAYS is related to chromatin remodeling factors and regulates flowering in Arabidopsis by repressing FT. Plant Cell, 15, 1552 1562. (Pubitemid 36872596)
-
(2003)
Plant Cell
, vol.15
, Issue.7
, pp. 1552-1562
-
-
Pineiro, M.1
Gomez-Mena, C.2
Schaffer, R.3
Martinez-Zapater, J.M.4
Coupland, G.5
-
43
-
-
0031238721
-
Developmental and auxin-induced expression of the Arabidopsis prha homeobox gene
-
Plesch, G., Stormann, K., Torres, J.T., Walden, R. Somssich, I.E. (1997) Developmental and auxin-induced expression of the Arabidopsis prha homeobox gene. Plant J. 12, 635 647. (Pubitemid 27434042)
-
(1997)
Plant Journal
, vol.12
, Issue.3
, pp. 635-647
-
-
Plesch, G.1
Stormann, K.2
Torres, J.T.3
Waiden, R.4
Somssich, I.E.5
-
44
-
-
33745840868
-
Two cell-cycle regulated SET-domain proteins interact with proliferating cell nuclear antigen (PCNA) in Arabidopsis
-
DOI 10.1111/j.1365-313X.2006.02799.x
-
Raynaud, C., Sozzani, R., Glab, N., Domenichini, S., Perennes, C., Cella, R., Kondorosi, E. Bergounioux, C. (2006) Two cell-cycle regulated SET-domain proteins interact with proliferating cell nuclear antigen (PCNA) in Arabidopsis. Plant J. 47, 395 407. (Pubitemid 44036408)
-
(2006)
Plant Journal
, vol.47
, Issue.3
, pp. 395-407
-
-
Raynaud, C.1
Sozzani, R.2
Glab, N.3
Domenichini, S.4
Perennes, C.5
Cella, R.6
Kondorosi, E.7
Bergounioux, C.8
-
45
-
-
0346888547
-
The DUET gene is necessary for chromosome organization and progression during male meiosis in Arabidopsis and encodes a PHD finger protein
-
DOI 10.1242/dev.00827
-
Reddy, T.V., Kaur, J., Agashe, B., Sundaresan, V. Siddiqi, I. (2003) The DUET gene is necessary for chromosome organization and progression during male meiosis in Arabidopsis and encodes a PHD finger protein. Development, 130, 5975 5987. (Pubitemid 38008801)
-
(2003)
Development
, vol.130
, Issue.24
, pp. 5975-5987
-
-
Reddy, T.V.1
Kaur, J.2
Agashe, B.3
Sundaresan, V.4
Siddiqi, I.5
-
46
-
-
33645224637
-
Grow-ING, age-ING and die-ING: ING proteins link cancer, senescence and apoptosis
-
Russell, M., Berardi, P., Gong, W. Riabowol, K. (2006) Grow-ING, age-ING and die-ING: ING proteins link cancer, senescence and apoptosis. Exp. Cell Res. 312, 951 961.
-
(2006)
Exp. Cell Res.
, vol.312
, pp. 951-961
-
-
Russell, M.1
Berardi, P.2
Gong, W.3
Riabowol, K.4
-
47
-
-
49949105034
-
The ArabidopsisOBERON1 and OBERON2 genes encode plant homeodomain finger proteins and are required for apical meristem maintenance
-
Saiga, S., Furumizu, C., Yokoyama, R., Kurata, T., Sato, S., Kato, T., Tabata, S., Suzuki, M. Komeda, Y. (2008) The ArabidopsisOBERON1 and OBERON2 genes encode plant homeodomain finger proteins and are required for apical meristem maintenance. Development, 135, 1751 1759.
-
(2008)
Development
, vol.135
, pp. 1751-1759
-
-
Saiga, S.1
Furumizu, C.2
Yokoyama, R.3
Kurata, T.4
Sato, S.5
Kato, T.6
Tabata, S.7
Suzuki, M.8
Komeda, Y.9
-
48
-
-
48249155078
-
The highly similar Arabidopsis homologs of trithorax ATX1 and ATX2 encode proteins with divergent biochemical functions
-
DOI 10.1105/tpc.107.056614
-
Saleh, A., Alvarez-Venegas, R., Yilmaz, M. et al. (2008) The highly similar Arabidopsis homologs of trithorax ATX1 and ATX2 encode proteins with divergent biochemical functions. Plant Cell, 20, 568 579. (Pubitemid 352843993)
-
(2008)
Plant Cell
, vol.20
, Issue.3
, pp. 568-579
-
-
Saleh, A.1
Alvarez-Venegas, R.2
Yilmaz, M.3
Hou, G.4
Sadder, M.5
Al-Abdallat, A.6
Xia, Y.7
Lu, G.8
Ladunga, I.9
Avramovaa, Z.10
-
49
-
-
0037683361
-
No evidence for PHD fingers as ubiquitin ligases
-
Scheel, H. Hofmann, K. (2003) No evidence for PHD fingers as ubiquitin ligases. Trends Cell Biol. 13, 285 287.
-
(2003)
Trends Cell Biol.
, vol.13
, pp. 285-287
-
-
Scheel, H.1
Hofmann, K.2
-
50
-
-
0027630839
-
HAT3.1, a novel Arabidopsis homeodomain protein containing a conserved cysteine-rich region
-
Schindler, U., Beckmann, H. Cashmore, A.R. (1993) HAT3.1, a novel Arabidopsis homeodomain protein containing a conserved cysteine-rich region. Plant J. 4, 137 150. (Pubitemid 223002637)
-
(1993)
Plant Journal
, vol.4
, Issue.1
, pp. 137-150
-
-
Schindler, U.1
Beckmann, H.2
Cashmore, A.R.3
-
51
-
-
0035118229
-
Targeting histone deacetylase complexes via KRAB-zinc finger proteins: The PHD and bromodomains of KAP-1 form a cooperative unit that recruits a novel isoform of the Mi-2α subunit of NuRD
-
DOI 10.1101/gad.869501
-
Schultz, D.C., Friedman, J.R. Rauscher, F.J. III. 2001) Targeting histone deacetylase complexes via KRAB-zinc finger proteins: the PHD and bromodomains of KAP-1 form a cooperative unit that recruits a novel isoform of the Mi-2alpha subunit of NuRD. Genes Dev. 15, 428 443. (Pubitemid 32187004)
-
(2001)
Genes and Development
, vol.15
, Issue.4
, pp. 428-443
-
-
Schultz, D.C.1
Friedman, J.R.2
Rauscher III, F.J.3
-
52
-
-
33745351544
-
Involvement of the arabidopsis SWI2/SNF2 chromatin remodeling gene family in DNA damage response and recombination
-
DOI 10.1534/genetics.105.051664
-
Shaked, H., Avivi-Ragolsky, N. Levy, A.A. (2006) Involvement of the Arabidopsis SWI2-SNF2 chromatin remodeling gene family in DNA damage response and recombination. Genetics, 173, 985 994. (Pubitemid 43945913)
-
(2006)
Genetics
, vol.173
, Issue.2
, pp. 985-994
-
-
Shaked, H.1
Avivi-Ragolsky, N.2
Levy, A.A.3
-
53
-
-
33745868054
-
ING2 PHD domain links histone H3 lysine 4 methylation to active gene repression
-
DOI 10.1038/nature04835, PII NATURE04835
-
Shi, X., Hong, T., Walter, K.L. et al. (2006) ING2 PHD domain links histone H3 lysine 4 methylation to active gene repression. Nature, 442, 96 99. (Pubitemid 44064216)
-
(2006)
Nature
, vol.442
, Issue.7098
, pp. 96-99
-
-
Shi, X.1
Hong, T.2
Walter, K.L.3
Ewalt, M.4
Michishita, E.5
Hung, T.6
Carney, D.7
Pena, P.8
Lan, F.9
Kaadige, M.R.10
Lacoste, N.11
Cayrou, C.12
Davrazou, F.13
Saha, A.14
Cairns, B.R.15
Ayer, D.E.16
Kutateladze, T.G.17
Shi, Y.18
Cote, J.19
Chua, K.F.20
Gozani, O.21
more..
-
54
-
-
34047248383
-
Proteome-wide analysis in Saccharomyces cerevisiae identifies several PHD fingers as novel direct and selective binding modules of histone H3 methylated at either lysine 4 or lysine 36
-
DOI 10.1074/jbc.C600286200
-
Shi, X., Kachirskaia, I., Walter, K.L. et al. (2007) Proteome-wide analysis in Saccharomyces cerevisiae identifies several PHD fingers as novel direct and selective binding modules of histone H3 methylated at either lysine 4 or lysine 36. J. Biol. Chem. 282, 2450 2455. (Pubitemid 47076750)
-
(2007)
Journal of Biological Chemistry
, vol.282
, Issue.4
, pp. 2450-2455
-
-
Shi, X.1
Kachirskaia, I.2
Walter, K.L.3
Kuo, J.-H.A.4
Lake, A.5
Davrazou, F.6
Chan, S.M.7
Martin, D.G.E.8
Fingerman, I.M.9
Briggs, S.D.10
Howe, L.11
Utz, P.J.12
Kutateladze, T.G.13
Lugovskoy, A.A.14
Bedford, M.T.15
Gozani, O.16
-
55
-
-
35548939802
-
After a decade of study-ING, a PHD for a versatile family of proteins
-
DOI 10.1016/j.tibs.2007.08.006, PII S0968000407002289
-
Soliman, M.A. Riabowol, K. (2007) After a decade of study-ING, a PHD for a versatile family of proteins. Trends Biochem. Sci., 32, 509 519. (Pubitemid 350008066)
-
(2007)
Trends in Biochemical Sciences
, vol.32
, Issue.11
, pp. 509-519
-
-
Soliman, M.A.1
Riabowol, K.2
-
56
-
-
0347717907
-
Vernalization in Arabidopsis thaliana is mediated by the PHD finger protein VIN3
-
DOI 10.1038/nature02195
-
Sung, S. Amasino, R.M. (2004) Vernalization in Arabidopsis thaliana is mediated by the PHD finger protein VIN3. Nature, 427, 159 164. (Pubitemid 38094956)
-
(2004)
Nature
, vol.427
, Issue.6970
, pp. 159-164
-
-
Sung, S.1
Amasino, R.M.2
-
57
-
-
33845381753
-
A PHD finger protein involved in both the vernalization and photoperiod pathways in Arabidopsis
-
DOI 10.1101/gad.1493306
-
Sung, S., Schmitz, R.J. Amasino, R.M. (2006) A PHD finger protein involved in both the vernalization and photoperiod pathways in Arabidopsis. Genes Dev. 20, 3244 3248. (Pubitemid 44904846)
-
(2006)
Genes and Development
, vol.20
, Issue.23
, pp. 3244-3248
-
-
Sung, S.1
Schmitz, R.J.2
Amasino, R.M.3
-
58
-
-
33751527233
-
Yng1 PHD Finger Binding to H3 Trimethylated at K4 Promotes NuA3 HAT Activity at K14 of H3 and Transcription at a Subset of Targeted ORFs
-
DOI 10.1016/j.molcel.2006.10.026, PII S1097276506007325
-
Taverna, S.D., Ilin, S., Rogers, R.S. et al. (2006) Yng1 PHD finger binding to H3 trimethylated at K4 promotes NuA3 HAT activity at K14 of H3 and transcription at a subset of targeted ORFs. Mol. Cell, 24, 785 796. (Pubitemid 44839214)
-
(2006)
Molecular Cell
, vol.24
, Issue.5
, pp. 785-796
-
-
Taverna, S.D.1
Ilin, S.2
Rogers, R.S.3
Tanny, J.C.4
Lavender, H.5
Li, H.6
Baker, L.7
Boyle, J.8
Blair, L.P.9
Chait, BrianT.10
Patel, D.J.11
Aitchison, J.D.12
Tackett, A.J.13
Allis, C.D.14
-
59
-
-
35848961668
-
How chromatin-binding modules interpret histone modifications: Lessons from professional pocket pickers
-
DOI 10.1038/nsmb1338, PII NSMB1338
-
Taverna, S.D., Li, H., Ruthenburg, A.J., Allis, C.D. Patel, D.J. (2007) How chromatin-binding modules interpret histone modifications: lessons from professional pocket pickers. Nature Struct. Mol. Biol. 14, 1025 1040. (Pubitemid 350060344)
-
(2007)
Nature Structural and Molecular Biology
, vol.14
, Issue.11
, pp. 1025-1040
-
-
Taverna, S.D.1
Li, H.2
Ruthenburg, A.J.3
Allis, C.D.4
Patel, D.J.5
-
60
-
-
1242317058
-
Pygopus Residues Required for its Binding to Legless Are Critical for Transcription and Development
-
DOI 10.1074/jbc.M309722200
-
Townsley, F.M., Thompson, B. Bienz, M. (2004) Pygopus residues required for its binding to Legless are critical for transcription and development. J. Biol. Chem. 279, 5177 5183. (Pubitemid 38220535)
-
(2004)
Journal of Biological Chemistry
, vol.279
, Issue.7
, pp. 5177-5183
-
-
Townsley, F.M.1
Thompson, B.2
Bienz, M.3
-
61
-
-
0034777147
-
The Arabidopsis MALE STERILITY1 (MS1) gene is a transcriptional regulator of male gametogenesis, with homology to the PHD-finger family of transcription factors
-
DOI 10.1046/j.1365-313X.2001.01125.x
-
Wilson, Z.A., Morroll, S.M., Dawson, J., Swarup, R. Tighe, P.J. (2001) The Arabidopsis MALE STERILITY1 (MS1) gene is a transcriptional regulator of male gametogenesis, with homology to the PHD-finger family of transcription factors. Plant J. 28, 27 39. (Pubitemid 33011507)
-
(2001)
Plant Journal
, vol.28
, Issue.1
, pp. 27-39
-
-
Wilson, Z.A.1
Morroll, S.M.2
Dawson, J.3
Swarup, R.4
Tighe, P.J.5
-
62
-
-
0027606329
-
CDNA encoding putative zinc finger motifs from salt-tolerant alfalfa (Medicago sativa L.) cells
-
Winicov, I. (1993) cDNA encoding putative zinc finger motifs from salt-tolerant alfalfa (Medicago sativa L.) cells. Plant Physiol. 102, 681 682.
-
(1993)
Plant Physiol.
, vol.102
, pp. 681-682
-
-
Winicov, I.1
-
63
-
-
0034110242
-
Alfin1 transcription factor overexpression enhances plant root growth under normal and saline conditions and improves salt tolerance in alfalfa
-
Winicov, I. (2000) Alfin1 transcription factor overexpression enhances plant root growth under normal and saline conditions and improves salt tolerance in alfalfa. Planta, 210, 416 422. (Pubitemid 30146892)
-
(2000)
Planta
, vol.210
, Issue.3
, pp. 416-422
-
-
Winicov, I.1
-
64
-
-
0032800433
-
Transgenic overexpression of the transcription factor Alfin1 enhances expression of the endogenous MsPRP2 gene in alfalfa and improves salinity tolerance of the plants
-
Winicov, I.I. Bastola, D.R. (1999) Transgenic overexpression of the transcription factor Alfin1 enhances expression of the endogenous MsPRP2 gene in alfalfa and improves salinity tolerance of the plants. Plant Physiol. 120, 473 480. (Pubitemid 29388191)
-
(1999)
Plant Physiology
, vol.120
, Issue.2
, pp. 473-480
-
-
Winicov, I.1
Bastola, D.R.2
-
65
-
-
33846961476
-
VIM1, a methylcytosine-binding protein required for centromeric heterochromatinization
-
DOI 10.1101/gad.1512007
-
Woo, H.R., Pontes, O., Pikaard, C.S. Richards, E.J. (2007) VIM1, a methylcytosine-binding protein required for centromeric heterochromatinization. Genes Dev. 21, 267 277. (Pubitemid 46246776)
-
(2007)
Genes and Development
, vol.21
, Issue.3
, pp. 267-277
-
-
Hye, R.W.1
Pontes, O.2
Pikaard, C.S.3
Richards, E.J.4
-
66
-
-
33745839365
-
A PHD finger of NURF couples histone H3 lysine 4 trimethylation with chromatin remodelling
-
DOI 10.1038/nature04815, PII NATURE04815
-
Wysocka, J., Swigut, T., Xiao, H. et al. (2006) A PHD finger of NURF couples histone H3 lysine 4 trimethylation with chromatin remodelling. Nature, 442, 86 90. (Pubitemid 44064214)
-
(2006)
Nature
, vol.442
, Issue.7098
, pp. 86-90
-
-
Wysocka, J.1
Swigut, T.2
Xiao, H.3
Milne, T.A.4
Kwon, S.Y.5
Landry, J.6
Kauer, M.7
Tackett, A.J.8
Chait, B.T.9
Badenhorst, P.10
Wu, C.11
Allis, C.D.12
-
67
-
-
0038118701
-
The Arabidopsis male meiocyte death1 gene encodes a PHD-finger protein that is required for male meiosis
-
Yang, X., Makaroff, C.A. Ma, H. (2003) The Arabidopsis MALE MEIOCYTE DEATH1 gene encodes a PHD-finger protein that is required for male meiosis. Plant Cell, 15, 1281 1295. (Pubitemid 36715172)
-
(2003)
Plant Cell
, vol.15
, Issue.6
, pp. 1281-1295
-
-
Yang, X.1
Makaroff, C.A.2
Ma, H.3
-
68
-
-
34447099171
-
Arabidopsis mesophyll protoplasts: A versatile cell system for transient gene expression analysis
-
DOI 10.1038/nprot.2007.199, PII NPROT.2007.199
-
Yoo, S.D., Cho, Y.H. Sheen, J. (2007) Arabidopsis mesophyll protoplasts: a versatile cell system for transient gene expression analysis. Nature Protocols, 2, 1565 1572. (Pubitemid 47028844)
-
(2007)
Nature Protocols
, vol.2
, Issue.7
, pp. 1565-1572
-
-
Yoo, S.-D.1
Cho, Y.-H.2
Sheen, J.3
-
69
-
-
34249068213
-
Whole-genome analysis of histone H3 lysine 27 trimethylation in Arabidopsis
-
Zhang, X., Clarenz, O., Cokus, S., Bernatavichute, Y.V., Pellegrini, M., Goodrich, J. Jacobsen, S.E. (2007) Whole-genome analysis of histone H3 lysine 27 trimethylation in Arabidopsis. PLoS Biol. 5, e129.
-
(2007)
PLoS Biol.
, vol.5
, pp. 129
-
-
Zhang, X.1
Clarenz, O.2
Cokus, S.3
Bernatavichute, Y.V.4
Pellegrini, M.5
Goodrich, J.6
Jacobsen, S.E.7
|