Histone marks and chromatin remodelers on the regulation of neurogenin1 gene in RA induced neuronal differentiation of P19 cells

Journal of Cellular Biochemistry

Volumn 107, Issue 2, 2009, Pages 264-271

  Wu, Meng ^a   Zhang, Ye ^a,b   Wu, Ning Hua ^a   Shen, Yu Fei ^a,b  

^a INSTITUTE OF BASIC MEDICAL SCIENCES   (China)

^b NONE

Author keywords

BRM; Histone modification; Neurogenin1; Neuronal differentiation; P19 cells; RA

Indexed keywords

BRG1 PROTEIN; BRM PROTEIN; HISTONE H3; NEUROGENIN 1; RETINOIC ACID;

ARTICLE; CELL LINE; CELL STRAIN P19; CHROMATIN ASSEMBLY AND DISASSEMBLY; CONTROLLED STUDY; EPIGENETICS; GENE ACTIVATION; GENE EXPRESSION; HUMAN; HUMAN CELL; METHYLATION; NERVE CELL DIFFERENTIATION; PRIORITY JOURNAL; REGULATORY MECHANISM;

ACETYLATION; ANIMALS; ANTINEOPLASTIC AGENTS; BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTORS; BLOTTING, WESTERN; CELL DIFFERENTIATION; CHROMATIN ASSEMBLY AND DISASSEMBLY; CHROMOSOMAL PROTEINS, NON-HISTONE; FLUORESCENT ANTIBODY TECHNIQUE; GENE EXPRESSION REGULATION; HISTONES; IMMUNOPRECIPITATION; METHYLATION; MICE; NERVE TISSUE PROTEINS; NEUROGENESIS; NEURONS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; TRANSCRIPTION FACTORS; TRETINOIN;

EID: 66149148589     PISSN: 07302312     EISSN: 10974644     Source Type: Journal    
DOI: 10.1002/jcb.22122     Document Type: Article

References (22)

1. Barski A, Cuddapah S, Cui K, Roh TY, Schones DE, Wang Z, Wei G, Chepelev I, Zhao K. 2007. High-resolution profiling of histone methylations in the human genome. Cell 129:823-837.
2. Bhaumik SR, Smith E, Shilatifard A. 2007. Covalent modifications of histones during development and disease pathogenesis. Nat Struct Mol Biol 14:1008-1016.
3. Chi T. 2004. A BAF-centred view of the immune system. Nat Rev Immunol 4:965-977.
4. Das AV, James J, Bhattacharya S, Imbalzano AN, Antony ML, Hegde G, Zhao X, Mallya K, Ahmad F, Knudsen E, Ahmad I. 2007. SWI/SNF chromatin remodeling ATPase Brm regulates the differentiation of early retinal stem cells/progenitors by influencing Brn3b expression and Notch signaling. J Biol Chem 282:35187-35201.
5. Diez del Corral R, Storey KG. 2001. Markers in vertebrate neurogenesis. Nat Rev Neurosci 2:835-839.
6. Ge X, Jin Q, Zhang F, Yan T, Zhai Q. 2009. PCAF acetylates {beta}-catenin and improves its stability. Mol Biol Cell 20:419-427.
7. Heintzman ND, Stuart RK, Hon G, Fu Y, Ching CW, Hawkins RD, Barrera LO, Van Calcar S, Qu C, Ching KA, Wang W, Weng Z, Green RD, Crawford GE, Ren B. 2007. Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome. Nat Genet 39:311-318.
8. Itoh T, Miyake K, Iijima S. 2008. Differentiation-specific expression of chromatin remodeling factor BRM. Biochem Biophys Res Commun 366:827-833.
9. Jenuwein T, Allis CD. 2001. Translating the histone code. Science 293:1074-1080.
10. Jones-Villeneuve EM, McBurney MW, Rogers KA, Kalnins VI. 1982. Retinoic acid induces embryonal carcinoma cells to differentiate into neurons and glial cells. J Cell Biol 94:253-262.
11. Lall S. 2007. Primers on chromatin. Nat Struct Mol Biol 14:1110-1115.
12. Latham JA, Dent SY. 2007. Cross-regulation of histone modifications. Nat Struct Mol Biol 14:1017-1024.
13. Li ZY, Yang J, Gao X, Lu JY, Zhang Y, Wang K, Cheng MB, Wu NH, Zhang Y, Wu Z, Shen YF. 2007. Sequential recruitment of PCAF and BRG1 contributes to myogenin activation in 12-O-tetradecanoylphorbol-13-acetate-induced early differentiation of rhabdomyosarcoma-derived cells. J Biol Chem 282:18872-18878.
14. Liu C, Xu D. 2001. Inhibition of histone deacetylses. In: Tollefsbol TO, editors. Methods in molecular biology: Epigenetics protocols. Totowa, New Jersey: Human Press. pp 87-97.
15. Liu Y, Taverna SD, Muratore TL, Shabanowitz J, Hunt DF, Allis CD. 2007. RNAi-dependent H3K27 methylation is required for heterochromatin formation and DNA elimination in Tetrahymena. Genes Dev 21:1530-1545.
16. Machida Y, Murai K, Miyake K, Iijima S. 2001. Expression of chromatin remodeling factors during neural differentiation. J Biochem 129:43-49.
17. Mikkelsen TS, Ku M, Jaffe DB, Issac B, Lieberman E, Giannoukos G, Alvarez P, Brockman W, Kim TK, Koche RP, Lee W, Mendenhall E, O'Donovan A, Presser A, Russ C, Xie XH, Meissner A, Wernig M, Jaenisch R, Nusbaum C, Lander ES, Bernstein BE. 2007. Genome-wide maps of chromatin state in pluripotent and lineage-committed cells. Nature 448:553-560.
18. Pan G, Tian S, Nie J, Yang C, Ruotti V, Wei H, Jonsdottir GA, Stewart R, Thomson JA. 2007. Whole-genome analysis of histone H3 lysine 4 and lysine 27 methylation in human embryonic stem cells. Cell Stem Cell 1:299-312.
19. Santos-Rosa H, Schneider R, Bannister AJ, Sherriff J, Bernstein BE, Emre NC, Schreiber SL, Mellor J, Kouzarides T. 2002. Active genes are tri-methylated at K4 of histone H3. Nature 419:407-411.
20. Seo S, Richardson GA, Kroll KL. 2005. The SWI/SNF chromatin remodeling protein Brg1 is required for vertebrate neurogenesis and mediates transactivation of Ngn and NeuroD. Development 132:105-115.
21. Sun Y, Nadal-Vicens M, Misono S, Lin MZ, Zubiaga A, Hua X, Fan G, Greenberg ME. 2001. Neurogenin promotes neurogenesis and inhibits glial differentiation by independent mechanisms. Cell 104:365-376.
22. Xiao L, Lang W. 2000. A dominant role for the c-Jun NH2-terminal kinase in oncogenic ras-induced morphologic transformation of human lung carcinoma cells. Cancer Res 60:400-408.