Nautella italica gen. nov., sp. nov., isolated from a marine electroactive biofilm

International Journal of Systematic and Evolutionary Microbiology

Volumn 59, Issue 4, 2009, Pages 811-817

  Vandecandelaere, Ilse ^a   Nercessian, Olivier ^b   Segaert, Eveline ^a   Achouak, Wafa ^b   Mollica, Alfonso ^c   Faimali, Marco ^c   Vandamme, Peter ^a  

^a GHENT UNIVERSITY   (Belgium)

^b AIX MARSEILLE UNIVERSITY   (France)

^c CNR   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

ANTIBIOTIC AGENT; CEFOXITIN; CLINDAMYCIN; CYTOSINE; ERYTHROMYCIN; FATTY ACID ESTER; GENOMIC DNA; GENTAMICIN; GUANINE; RNA 16S; STAINLESS STEEL; STREPTOMYCIN; TETRACYCLINE; TRIMETHOPRIM; URACIL; VANCOMYCIN; BACTERIAL DNA; FATTY ACID; RIBOSOME DNA;

ALPHAPROTEOBACTERIA; ANTIBIOTIC RESISTANCE; ANTIBIOTIC SENSITIVITY; ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATION; BIOFILM; CONTROLLED STUDY; DNA CONTENT; GENOTYPE; GRAM NEGATIVE BACTERIUM; MARINE BACTERIUM; NAUTELLA ITALICA; NEW GENUS; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PRIORITY JOURNAL; RNA SEQUENCE; ROSEOBACTER; TAXONOMIC IDENTIFICATION; WHOLE CELL; BACTERIUM IDENTIFICATION; CHEMISTRY; CLASSIFICATION; CLUSTER ANALYSIS; DNA BASE COMPOSITION; DNA FINGERPRINTING; DNA SEQUENCE; GENETICS; ISOLATION AND PURIFICATION; METHODOLOGY; MICROBIOLOGY; MOLECULAR GENETICS; PHYLOGENY; PHYSIOLOGY; RHODOBACTERACEAE; SEQUENCE HOMOLOGY;

ALPHAPROTEOBACTERIA; ROSEOBACTER;

BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; BIOFILMS; CLUSTER ANALYSIS; DNA FINGERPRINTING; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; MOLECULAR SEQUENCE DATA; PHYLOGENY; RHODOBACTERACEAE; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID; WATER MICROBIOLOGY;

EID: 66149087371     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.002683-0     Document Type: Article

References (39)

1. Barrow, G. I. & Feltham, R. K. A. (1993). Cowan and Steel's Manual for the Identification of Medical Bacteria, 3rd edn. Cambridge: Cambridge University Press.
2. Brinkmeyer, R., Knittel, K., Jürgens, J., Weyland, H., Amann, R. & Helmke, E. (2003). Diversity and structure of bacterial communities in Arctic versus Antarctic pack ice. Appl Environ Microbiol 69, 6610-6619.
3. Buchan, A., Collier, L. S., Neidle, E. L. & Moran, M. A. (2000). Key aromatic-ring-cleaving enzyme, protocatechuate 3,4-dioxygenase, in the ecologically important marine Roseobacter lineage. Appl Environ Microbiol 66, 4662-4672.
4. Dang, H. & Lovell, C. R. (2000). Bacterial primary colonization and early succession on surfaces in marine waters as determined by amplified rRNA gene restriction analysis and sequence analysis of 16S rRNA genes. Appl Environ Microbiol 66, 467-475.
5. Edwards, U., Rogall, T., Blocker, H., Emde, M. & Bottger, E. C. (1989). Isolation and direct complete nucleotide determination of entire genes. Characterization of a gene coding for 16S ribosomal RNA. Nucleic Acids Res 17, 7843-7853.
6. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
7. Faimali, M., Chelossi, E., Garaventa, F., Corrà, C., Greco, G. & Mollica, A. (2008). Evolution of oxygen reduction current and biofilm on stainless steels cathodically polarized in natural aerated seawater. Electrochim Acta 54, 148-153.
8. González, J. M. & Moran, M. A. (1997). Numerical dominance of a group of marine bacteria in the α-subclass of the class Proteobacteria in coastal seawater. Appl Environ Microbiol 63, 4237-4242.
9. González, J. M., Whitman, W. B., Hodson, R. E. & Moran, M. A. (1996). Identifying numerically abundant culturable bacteria from complex communities: an example from a lignin enrichment culture. Appl Environ Microbiol 62, 4433-4440.
10. González, J. M., Simo, R., Massana, R., Covert, J. S., Casamayor, E. O., Pedros-Alio, C. & Moran, M. A. (2000). Bacterial community structure associated with a dimethylsulfoniopropionate-producing North Atlantic algal bloom. Appl Environ Microbiol 66, 4237-4246.
11. Hall, T. A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41, 95-98.
12. Inagaki, F., Suzuki, M., Takai, K., Oida, H., Sakamoto, T., Aoki, K., Nealson, K. H. & Horikoshi, K. (2003). Microbial communities associated with geological horizons in coastal subseafloor sediments from the Sea of Okhotsk. Appl Environ Microbiol 69, 7224-7235.
13. King, G. M. (2003). Molecular and culture-based analyses of aerobic carbon monoxide oxidizer diversity. Appl Environ Microbiol 69, 7257-7265.
14. Martens, T., Heidorn, T., Pukall, R., Simon, M., Tindall, B. J. & Brinkhoff, T. (2006). Reclassification of Roseobacter gallaeciensis Ruiz-Ponte et al. 1998 as Phaeobacter gallaeciensis gen. nov., comb. nov., description of Phaeobacter inhibens sp. nov., reclassification of Ruegeria algicola (Lafay et al. 1995) Uchino et al. 1999 as Marinovum algicola gen. nov., comb. nov., and emended descriptions of the genera Roseobacter, Ruegeria and Leisingera. Int J Syst Evol Microbiol 56, 1293-1304.
15. Martens, T., Gram, L., Grossart, H. P., Kessler, D., Müller, R., Simon, M., Wenzel, S. C. & Brinkhoff, T. (2007). Bacteria of the Roseobacter clade show potential for secondary metabolite production. Microb Ecol 54, 31-42.
16. Mast, J., Nanbru, C., Van Den Berg, T. & Meulemans, G. (2005). Ultrastructural changes of the tracheal epithelium after vaccination of day-old chickens with the La Sota strain of Newcastle disease virus. Vet Pathol 42, 559-565.
17. Mergaert, J., Verhelst, A., Cnockaert, M. C., Tan, T. L. & Swings, J. (2001). Characterization of facultative oligotrophic bacteria from polar seas by analysis of their fatty acids and 16S rDNA sequences. Syst Appl Microbiol 24, 98-107.
18. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by highperformance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
19. Moran, M. A., Gonzalez, J. M. & Kiene, R. P. (2003). Linking a bacterial taxon to sulfur cycling in the sea: studies of the marine Roseobacter group. Geomicrobiol J 20, 375-388.
20. Moran, M. A., Buchan, A., Gonzalez, J. M., Heidelberg, J. F., Whitman, W. B., Kiene, R. P., Henriksen, J. R., King, G. M., Belas, R. & other authors (2004). Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment. Nature 432, 910-913.
21. Pitcher, D. G., Saunders, N. A. & Owen, R. J. (1989). Rapid extraction of bacterial genomic DNA with guanidium thiocyanate. Lett Appl Microbiol 8, 151-156.
22. Rademaker, J. L. W. & De Bruijn, F. J. (1997). Characterization and classification of microbes by rep-PCR genomic fingerprinting and computer-assisted pattern analysis. In DNA Markers: Protocols, Applications, and Overviews, pp. 151-171. Edited by G. Caetano- Anollès & P. M. Gresshoff. New York: Wiley.
23. Raes, J. & Van De Peer, Y. (1999). ForCon: a software tool for the conversion of sequence alignments. http://www.ebi.ac.uk/ embnet.-news/vol6_1/ForCon/body_forcon.html
24. Reichenbach, H. & Dworkin, M. (1981). Introduction to the gliding bacteria. In The Prokaryotes, vol. 1, pp. 315-327. Edited by M. P. Starr, H. Stolp, H. G. Trüper, A. Balows & H. G. Schlegel. Berlin: Springer.
25. Rüger, H. J. & Hö fle, M. G. (1992). Marine star-shaped-aggregate-forming bacteria: Agrobacterium atlanticum sp. nov.; Agrobacterium meteori sp. nov.; Agrobacterium ferrugineum sp. nov., nom. rev.; Agrobacterium gelatinovorum sp. nov., nom. rev.; and Agrobacterium stellulatum sp. nov., nom. rev. Int J Syst Bacteriol 42, 133-143.
26. Ruiz-Ponte, C., Cilia, V., Lambert, C. & Nicolas, J. L. (1998). Roseobacter gallaeciensis sp. nov., a new marine bacterium isolated from rearings and collectors of the scallop Pecten maximus. Int J Syst Bacteriol 48, 537-542.
27. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
28. Schaefer, J. K., Goodwin, K. D., McDonald, I. R., Murrell, J. C. & Oremland, R. S. (2002). Leisingera methylohalidivorans gen. nov., sp. nov., a marine methylotroph that grows on methyl bromide. Int J Syst Evol Microbiol 52, 851-859.
29. Selje, N., Simon, M. & Brinkhoff, T. (2004). A newly discovered Roseobacter cluster in temperate and polar oceans. Nature 427, 445-448.
30. Shiba, T. (1991). Roseobacter litoralis gen. nov., sp. nov., and Roseobacter denitrificans sp. nov., aerobic pink-pigmented bacteria which contain bacteriochlorophyll a. Syst Appl Microbiol 14, 140-145.
31. Sierra, G. (1957). A simple method for the detection of lipolytic activity of microorganisms and some observations on the influence of the contact between cells and fatty substrates. Antonie van Leeuwenhoek 23, 15-22.
32. Suzuki, M. T., Preston, C. M., Chavez, F. P. & DeLong, E. F. (2001). Quantitative mapping of bacterioplankton populations in seawater: field tests across an upwelling plume in Monterey Bay. Aquat Microb Ecol 24, 117-127.
33. Tan, T. L. & Rüger, H. J. (1999). Enrichment, isolation, and Biolog metabolic fingerprints of oligotrophic bacteria from the Antarctic Ocean. Arch Hydrobiol Spec Issues Adv Limnol 54, 255-272.
34. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
35. Uchino, Y., Hirata, A., Yokota, A. & Sugiyama, J. (1998). Reclassification of marine Agrobacterium species: proposals of Stappia stellulata gen. nov., comb. nov., Stappia aggregata sp. nov., nom. rev., Ruegeria atlantica gen. nov., comb. nov., Ruegeria gelatinovora comb. nov., Ruegeria algicola comb. nov., and Ahrensia kieliense gen. nov., sp. nov., nom. rev. J Gen Appl Microbiol 44, 201-210.
36. Van De Peer, Y. & De Wachter, R. (1994). TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment. Comput Appl Biosci 10, 569-570.
37. Vandecandelaere, I., Nercessian, O., Segaert, E., Achouak, W., Mollica, A., Faimali, M., De Vos, P. & Vandamme, P. (2008). Alteromonas genovensis sp. nov., isolated from a marine electroactive biofilm and emended description of Alteromonas macleodii Baumann et al. 1972 (Approved Lists 1980). Int J Syst Evol Microbiol 58, 2589-2596.
38. Versalovic, J., Schneider, M., De Bruijn, F. J. & Lupski, J. R. (1994). Genomic fingerprinting of bacteria using repetitive sequence-based polymerase chain reaction. Methods Mol Cell Biol 5, 25-40.
39. Yoon, J. H., Kang, S. J., Lee, S. Y. & Oh, T. K. (2007). Phaeobacter daeponensis sp. nov., isolated from a tidal flat of the Yellow Sea in Korea. Int J Syst Evol Microbiol 57, 856-861.