Phylogenetic relationships in the harmful dinoflagellate Cochlodinium polykrikoides (Gymnodiniales, Dinophyceae) inferred from LSU rDNA sequences

Harmful Algae

Volumn 7, Issue 3, 2008, Pages 271-277

  Iwataki, Mitsunori ^a   Kawami, Hisae ^a   Mizushima, Koichiro ^a   Mikulski, Christina M ^b   Doucette, Gregory J ^b   Relox Jr , Juan R ^c   Anton, Ann ^d   Fukuyo, Yasuwo ^e   Matsuoka, Kazumi ^a  

^a NAGASAKI UNIVERSITY   (Japan)

^b CENTER FOR COASTAL ENVIRONMENTAL HEALTH AND BIOMOLECULAR RESEARCH   (United States)

^c Bureau of Fisheries and Aquatic Resources   (Philippines)

^d UNIVERSITI MALAYSIA SABAH   (Malaysia)

^e UNIVERSITY OF TOKYO   (Japan)

Author keywords

Cochlodinium fulvescens; Cochlodinium polykrikoides; Distribution; HAB; LSU rDNA; Phylogeny

Indexed keywords

COCHLODINIUM; COCHLODINIUM POLYKRIKOIDES; DINOPHYCEAE; GYMNODINIALES;

EID: 39149097811     PISSN: 15689883     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.hal.2007.12.003     Document Type: Article

References (25)

1. Ahn Y.-H., Shanmugam P., Ryu J.-H., and Jeong J.-C. Satellite detection of harmful algal bloom occurrences in Korean waters. Harmful Algae 5 (2006) 213-231
2. Azanza R.V., and Baula I.U. Fish kills association with Cochlodinium Blooms in Palawan, the "last frontier" of the Philippines. Harmful Algae News 29 (2005) 13-14
3. Daugbjerg N., Hansen G., Larsen J., and Moestrup Ø. Phylogeny of some of the major genera of dinoflagellates based on ultrastructure and partial LSU rDNA sequence data, including the erection of three new genera of unarmoured dinoflagellates. Phycologia 39 (2000) 302-317
4. de Salas M.F., Bolch C.J.S., and Hallegraeff G.M. Karenia umbella sp. nov. (Gymnodiniales, Dinophyceae), a new potentially ichthyotoxic dinoflagellate from Tasmania, Australia. Phycologia 43 (2004) 166-175
5. Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39 (1985) 783-791
6. Guillard R.R.L. Culture of phytoplankton for feeding marine invertebrates. In: Smith W.L., and Chanley M.H. (Eds). Culture of Marine Invertebrate Animals (1975), Plenum Press, New York 29-60
7. Iwataki M., Kawami H., and Matsuoka K. Cochlodinium fulvescens sp. nov. (Gymnodiniales, Dinophyceae), a new chain-forming unarmored dinoflagellate from Asian coasts. Phycol. Res. 55 (2007) 231-239
8. Jeong H.J., Yoo Y.D., Kim J.S., Kim T.H., Kim J.H., Kang N.S., and Yih W. Mixotrophy in the phototrophic harmful alga Cochlodinium polykrikoides (Dinophycean): prey species, the effects of prey concentration, and grazing impact. J. Eukaryotic Microbiol. 51 (2004) 563-569
9. Kim C.-H., Cho H.-J., Shin J.-B., Moon C.-H., and Matsuoka K. Overwintering potential of hyaline cysts of Cochlodinium polykrikoides (Gymnodiniales, Dinophyceae): An annual red tide organism along the Korean coast. Phycologia 41 (2002) 667-669
10. Kim C.-J., Kim H.-G., Kim C.-H., and Oh H.-M. Life cycle of the ichthyotoxic dinoflagellate Cochlodinium polykrikoides in Korean coastal waters. Harmful Algae 6 (2007) 104-111
11. Kim D.-I., Matsuyama Y., Nagasoe S., Yamaguchi M., Yoon Y.-H., Oshima Y., Imada N., and Honjo T. Effects of temperature, salinity and irradiance on the growth of the harmful red tide dinoflagellate Cochlodinium polykrikoides Margalef (Dinophyceae). J. Plankton Res. 26 (2004) 61-66
12. Margalef R. Hidrografia y fitoplancton de un área marina de la costa meridional de Puerto Rico. Invest. Pesq. 18 (1961) 33-96
13. Matsuoka, K., Fukuyo, Y., 2000. Technical guide for modern dinoflagellate cyst study. IOC/WESTPAC-HAB, the University of Tokyo, Tokyo, 29 pp., 22 pls.
14. Matsuoka K., and Iwataki M. Present status in study on a harmful algal unarmored Cochlodinium polykrikoides Margalef. Bull. Plankton Soc. Jpn. 51 (2004) 38-45
15. Matsuoka, K., Kawami, H., Iwataki, M. Morphology and taxonomy of chain forming species of the genus Cochlodinium (Dinophyceae). Harmful Algae, 2008.
16. Miyahara K., Uji R., Yamada H., Matsui Y., Nishikawa T., and Onitsuka G. A harmful bloom of Cochlodinium polykrikoides Margalef (Dinophyceae) in the coastal area of San-in, western part of the Japan Sea, in September 2003. Bull. Plankton Soc. Jpn. 52 (2005) 11-18
17. Park J.G., Jeong M.K., Lee M.K., Cho K.-J., and Kwon O.-S. Diurnal vertical migration of a harmful dinoflagellate, Cochlodinium polykrikoides (Dinophyceae), during a red tide in coastal waters of Namhae Island, Korea. Phycologia 40 (2001) 292-297
18. Posada D., and Crandall K.A. ModelTest: testing the model of DNA substitution. Bioinformatics 14 (1998) 817-818
19. Scholin C.A., Herzog M., Sogin M., and Anderson D.M. Identification of group- and strain-specific markers for globally distributed Alexandrium (Dinophyceae) II. Sequence analysis of a fragment of the LSU rRNA gene. J. Phycol. 30 (1994) 999-1011
20. Swofford, D. L., 2003. PAUP*: Phylogenetic Analysis Using Parsimony (*and Other Methods), version 4.0b10. Sinauer, Sunderland, MA.
21. Tamura K., and Nei M. Estimation of the number of nucleotide substitution in the control region of mitochondrial DNA in humans and chimpanzees. Mol. Biol. Evol. 10 (1993) 512-526
22. NIES-collection. List of strains. In: Watanabe M.M., Kawachi M., Hiroki M., and Kasai F. (Eds). Microalgae and protozoa. sixth ed. (2000), National Institute of Environmental Studies, Tsukuba 159 p
23. Whyte J.N.C., Haigh N., Ginther N.G., and Keddy L.J. First record of blooms of Cochlodinium sp. (Gymnodiniales, Dinophyceae) causing mortality to aquacultured salmon on the west coast of Canada. Phycologia 40 (2001) 298-304
24. Yamatogi T., Sakaguti M., Takagi N., Iwataki M., and Matsuoka K. Effects of temperature, salinity and light intensity on the growth of a harmful dinoflagellate Cochlodinium polykrikoides Margalef occurring in coastal waters of West Kyushu, Japan. Bull. Plankton Soc. Jpn. 52 (2005) 4-10
25. Yuki M., and Yoshimatsu S. Two fish-killing species of Cochlodinium from Harima Nada, Seto Inland Sea, Japan. In: Okaichi T., Anderson D.M., and Nemoto T. (Eds). Red Tides: Biology, Environmental Science, and Toxicology (1989), Elsevier, Amsterdam 451-454