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Volumn 36, Issue 7, 2008, Pages 573-583

Implications of complete nuclear large subunit ribosomal RNA molecules from the harmful unarmored dinoflagellate Cochlodinium polykrikoides (Dinophyceae) and relatives

Author keywords

Cochlodinium polykrikoides; Dinophyceae; Large subunit rDNA; Phylogeny; Secondary structure

Indexed keywords

DINOFLAGELLATE; DNA; GENETIC ANALYSIS; PARSIMONY ANALYSIS; PHYLOGENETICS; PHYLOGENY; RNA; TAXONOMY;

EID: 44649180461     PISSN: 03051978     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bse.2008.03.007     Document Type: Article
Times cited : (14)

References (41)
  • 1
    • 31744436661 scopus 로고    scopus 로고
    • Satellite detection of harmful algal bloom occurrences in Korean waters
    • Ahn Y.H., Shanmugam P., Ryu J.H., and Jeong J.C. Satellite detection of harmful algal bloom occurrences in Korean waters. Harmful Algae 5 (2006) 213-231
    • (2006) Harmful Algae , vol.5 , pp. 213-231
    • Ahn, Y.H.1    Shanmugam, P.2    Ryu, J.H.3    Jeong, J.C.4
  • 3
    • 0242570887 scopus 로고    scopus 로고
    • The potential threat of algal blooms to the abalone (Haliotis midae) mariculture industry situated around the South African coast
    • Botes L., Smit A.J., and Cook P.A. The potential threat of algal blooms to the abalone (Haliotis midae) mariculture industry situated around the South African coast. Harmful Algae 2 (2003) 247-259
    • (2003) Harmful Algae , vol.2 , pp. 247-259
    • Botes, L.1    Smit, A.J.2    Cook, P.A.3
  • 4
    • 0035125135 scopus 로고    scopus 로고
    • A comparative study of the harmful dinoflagellates Cochlodinium polykrikoides and Gyrodinium impudicum using transmission electron microscopy, fatty acid composition, carotenoid content, DNA quantification and gene sequences
    • Cho E.S., Kim G.Y., Choi B.D., Rhodes L.L., Kim T.J., Kim G.H., and Lee J.D. A comparative study of the harmful dinoflagellates Cochlodinium polykrikoides and Gyrodinium impudicum using transmission electron microscopy, fatty acid composition, carotenoid content, DNA quantification and gene sequences. Botanica Marina 44 (2001) 57-66
    • (2001) Botanica Marina , vol.44 , pp. 57-66
    • Cho, E.S.1    Kim, G.Y.2    Choi, B.D.3    Rhodes, L.L.4    Kim, T.J.5    Kim, G.H.6    Lee, J.D.7
  • 5
    • 0033638719 scopus 로고    scopus 로고
    • Phylogeny of some of the major genera of dinoflagellate based on ultrastructure and partial LSU rDNA sequence data, including the erection of three new genera of unarmored dinoflagellates
    • Daugbjerg N., Hansen G., Larsen J., and Moestrup Ø. Phylogeny of some of the major genera of dinoflagellate based on ultrastructure and partial LSU rDNA sequence data, including the erection of three new genera of unarmored dinoflagellates. Phycologia 39 (2000) 302-317
    • (2000) Phycologia , vol.39 , pp. 302-317
    • Daugbjerg, N.1    Hansen, G.2    Larsen, J.3    Moestrup, Ø.4
  • 6
    • 0027732016 scopus 로고
    • DCSE, an interactive tool for sequence alignment and secondary structure research
    • De Rijk P., and De Wachter R. DCSE, an interactive tool for sequence alignment and secondary structure research. Bioinformatics 9 (1993) 735-740
    • (1993) Bioinformatics , vol.9 , pp. 735-740
    • De Rijk, P.1    De Wachter, R.2
  • 7
    • 0030829855 scopus 로고    scopus 로고
    • RnaViz, a program for the visualization of RNA secondary structure
    • De Rijk P., and De Wachter R. RnaViz, a program for the visualization of RNA secondary structure. Nucleic Acids Research 25 (1997) 4679-4684
    • (1997) Nucleic Acids Research , vol.25 , pp. 4679-4684
    • De Rijk, P.1    De Wachter, R.2
  • 10
    • 0033506095 scopus 로고    scopus 로고
    • Dinoflagellate phylogeny revisited: reconciling morphological and molecular based phylogenies
    • Fensome R.A., Saldarriaga J.F., and Taylor F.J.R. Dinoflagellate phylogeny revisited: reconciling morphological and molecular based phylogenies. Grana 38 (1999) 66-80
    • (1999) Grana , vol.38 , pp. 66-80
    • Fensome, R.A.1    Saldarriaga, J.F.2    Taylor, F.J.R.3
  • 11
    • 0027225783 scopus 로고
    • A compilation of large subunit (23S- and 23S-like) ribosomal RNA structures
    • Gutell R.R., Gray M.W., and Schnare M.N. A compilation of large subunit (23S- and 23S-like) ribosomal RNA structures. Nucleic Acids Research 21 (1993) 3055-3074
    • (1993) Nucleic Acids Research , vol.21 , pp. 3055-3074
    • Gutell, R.R.1    Gray, M.W.2    Schnare, M.N.3
  • 13
    • 0021770476 scopus 로고
    • The complete nucleotide sequence of mouse 28S rRNA gene. Implications for the process of size increase of the large subunit rRNA in higher eukaryotes
    • Hassouna N., Michot B., and Bachellerie J.-P. The complete nucleotide sequence of mouse 28S rRNA gene. Implications for the process of size increase of the large subunit rRNA in higher eukaryotes. Nucleic Acids Research 12 (1984) 3563-3583
    • (1984) Nucleic Acids Research , vol.12 , pp. 3563-3583
    • Hassouna, N.1    Michot, B.2    Bachellerie, J.-P.3
  • 14
    • 0026300584 scopus 로고
    • Ribosomal DNA: molecular evolution and phylogenetic inference
    • Hillis D.M., and Dixon M.T. Ribosomal DNA: molecular evolution and phylogenetic inference. Quarterly Review of Biology 66 (1991) 411-453
    • (1991) Quarterly Review of Biology , vol.66 , pp. 411-453
    • Hillis, D.M.1    Dixon, M.T.2
  • 15
    • 5344271629 scopus 로고    scopus 로고
    • Taxonomic and biological studies on causative organisms from a large-scale red tide occurring in Pearl River Estuary in the spring, 1998
    • Huang C., and Dong Q. Taxonomic and biological studies on causative organisms from a large-scale red tide occurring in Pearl River Estuary in the spring, 1998. Oceanologia Et Limnologia Sinica 31 (2000) 233-238
    • (2000) Oceanologia Et Limnologia Sinica , vol.31 , pp. 233-238
    • Huang, C.1    Dong, Q.2
  • 16
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES: Bayesian inference of phylogenetic trees
    • Huelsenbeck J.P., and Ronquist F. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17 (2001) 754-755
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 17
    • 39149097811 scopus 로고    scopus 로고
    • Phylogenetic relationships in the harmful dinoflagellate Cochlodinium polykrikoides (Gymnodiniales, Dinophyceae) inferred from LSU rDNA sequences
    • Iwataki M., Kawami H., Mizushima K., Mikulski C.M., Doucette G.J., Relox Jr. J.R., Anton A., Fukuyo Y., and Matsuoka K. Phylogenetic relationships in the harmful dinoflagellate Cochlodinium polykrikoides (Gymnodiniales, Dinophyceae) inferred from LSU rDNA sequences. Harmful Algae 7 (2008) 271-277
    • (2008) Harmful Algae , vol.7 , pp. 271-277
    • Iwataki, M.1    Kawami, H.2    Mizushima, K.3    Mikulski, C.M.4    Doucette, G.J.5    Relox Jr., J.R.6    Anton, A.7    Fukuyo, Y.8    Matsuoka, K.9
  • 18
    • 32144449404 scopus 로고    scopus 로고
    • Efficient 5′ ETS walking from conserved 18S rDNA sequences of dinoflagellates Alexandrium and Akashiwo sanguinea (Dinophyceae)
    • Ki J.-S., and Han M.-S. Efficient 5′ ETS walking from conserved 18S rDNA sequences of dinoflagellates Alexandrium and Akashiwo sanguinea (Dinophyceae). Journal Applied Phycology 17 (2005) 475-481
    • (2005) Journal Applied Phycology , vol.17 , pp. 475-481
    • Ki, J.-S.1    Han, M.-S.2
  • 19
    • 32844458773 scopus 로고    scopus 로고
    • A low-density oligonucleotide array study for parallel detection of harmful algal species using hybridization of consensus PCR products of LSU rDNA D2 domain
    • Ki J.-S., and Han M.-S. A low-density oligonucleotide array study for parallel detection of harmful algal species using hybridization of consensus PCR products of LSU rDNA D2 domain. Biosensors and Bioelectronics 21 (2006) 1812-1821
    • (2006) Biosensors and Bioelectronics , vol.21 , pp. 1812-1821
    • Ki, J.-S.1    Han, M.-S.2
  • 20
    • 34047134496 scopus 로고    scopus 로고
    • Informative characters on the 12 divergent domains within complete LSU rDNA sequences of the harmful dinoflagellate Alexandrium genus (Dinophyceae)
    • Ki J.-S., and Han M.-S. Informative characters on the 12 divergent domains within complete LSU rDNA sequences of the harmful dinoflagellate Alexandrium genus (Dinophyceae). Journal of Eukaryotic Microbiology 54 (2007) 210-219
    • (2007) Journal of Eukaryotic Microbiology , vol.54 , pp. 210-219
    • Ki, J.-S.1    Han, M.-S.2
  • 21
    • 33847047931 scopus 로고    scopus 로고
    • Complete sequence and secondary structure of the large subunit ribosomal RNA from the harmful unarmored dinoflagellate Akashiwo sanguinea
    • Ki J.-S., and Han M.-S. Complete sequence and secondary structure of the large subunit ribosomal RNA from the harmful unarmored dinoflagellate Akashiwo sanguinea. DNA Sequence 18 (2007) 19-25
    • (2007) DNA Sequence , vol.18 , pp. 19-25
    • Ki, J.-S.1    Han, M.-S.2
  • 22
    • 34248378271 scopus 로고    scopus 로고
    • Cryptic long internal repeat sequences in the ITS1 of ribosomal DNA in the dinoflagellate Cochlodinium polykrikoides (Dinophyceae): a track of 101 nt. as parallel 6 times and palindrome-like structure
    • Ki J.-S., and Han M.-S. Cryptic long internal repeat sequences in the ITS1 of ribosomal DNA in the dinoflagellate Cochlodinium polykrikoides (Dinophyceae): a track of 101 nt. as parallel 6 times and palindrome-like structure. Genes & Genetic Systems 82 (2007) 161-166
    • (2007) Genes & Genetic Systems , vol.82 , pp. 161-166
    • Ki, J.-S.1    Han, M.-S.2
  • 23
    • 0345580831 scopus 로고    scopus 로고
    • Reactive oxygen species as causative agents in the ichthyotoxicity of the red tide dinoflagellate Cochlodinium polykrikoides
    • Kim C.S., Lee S.G., Lee C.K., Kim H.G., and Jung J. Reactive oxygen species as causative agents in the ichthyotoxicity of the red tide dinoflagellate Cochlodinium polykrikoides. Journal of Plankton Research 21 (1999) 2105-2115
    • (1999) Journal of Plankton Research , vol.21 , pp. 2105-2115
    • Kim, C.S.1    Lee, S.G.2    Lee, C.K.3    Kim, H.G.4    Jung, J.5
  • 24
    • 1642482297 scopus 로고    scopus 로고
    • Effects of temperature, salinity and irradiance on the growth of the harmful red tide dinoflagellate Cochlodinium polykrikoides margalef (Dinophyceae)
    • Kim D.I., Matsuyama Y., Mineo S.N., Yoon Y.H., and Oshima Y. Effects of temperature, salinity and irradiance on the growth of the harmful red tide dinoflagellate Cochlodinium polykrikoides margalef (Dinophyceae). Journal of Plankton Research 26 (2004) 61-66
    • (2004) Journal of Plankton Research , vol.26 , pp. 61-66
    • Kim, D.I.1    Matsuyama, Y.2    Mineo, S.N.3    Yoon, Y.H.4    Oshima, Y.5
  • 25
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution 16 (1980) 111-120
    • (1980) Journal of Molecular Evolution , vol.16 , pp. 111-120
    • Kimura, M.1
  • 26
    • 0024694168 scopus 로고
    • Dinoflagellates in evolution. A molecular phylogenetic analysis of large subunit ribosomal RNA
    • Lenaers G., Maroteaux L., Michot B., and Herzog M. Dinoflagellates in evolution. A molecular phylogenetic analysis of large subunit ribosomal RNA. Journal of Molecular Evolution 29 (1989) 40-51
    • (1989) Journal of Molecular Evolution , vol.29 , pp. 40-51
    • Lenaers, G.1    Maroteaux, L.2    Michot, B.3    Herzog, M.4
  • 28
    • 34548355294 scopus 로고    scopus 로고
    • Cochlodinium polykrikoides in the Peconic Estuary
    • Nuzzi R. Cochlodinium polykrikoides in the Peconic Estuary. Harmful Algae News 27 (2004) 10-11
    • (2004) Harmful Algae News , vol.27 , pp. 10-11
    • Nuzzi, R.1
  • 29
    • 0030203863 scopus 로고    scopus 로고
    • TREEVIEW: an application to display of phylogenetic trees on personal computers
    • Page R.D.M. TREEVIEW: an application to display of phylogenetic trees on personal computers. Computer Applications in the Biosciences 12 (1996) 357-358
    • (1996) Computer Applications in the Biosciences , vol.12 , pp. 357-358
    • Page, R.D.M.1
  • 30
    • 0031773680 scopus 로고    scopus 로고
    • MODELTEST: testing the model of DNA substitution
    • Posada D., and Crandall K.A. MODELTEST: testing the model of DNA substitution. Bioinformatics 14 (1998) 817-818
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 31
    • 0002574521 scopus 로고
    • rRNA: From structure to function
    • Hill W.E., Dahlberg A., Garrett R.A., Moore P.B., Schlessinger D., and Warner J.R. (Eds), American Society of Microbiology, Washington, DC
    • Raué H.A., Musters W., Rutgers C.A., Van't Riet J., and Planta R.J. rRNA: From structure to function. In: Hill W.E., Dahlberg A., Garrett R.A., Moore P.B., Schlessinger D., and Warner J.R. (Eds). The Ribosome, Structure, Function and Evolution (1990), American Society of Microbiology, Washington, DC 217-235
    • (1990) The Ribosome, Structure, Function and Evolution , pp. 217-235
    • Raué, H.A.1    Musters, W.2    Rutgers, C.A.3    Van't Riet, J.4    Planta, R.J.5
  • 32
    • 0023375195 scopus 로고
    • The neighbor-joining method: a new method for reconstructing phylogenetic trees
    • Saitou N., and Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution 4 (1987) 406-425
    • (1987) Molecular Biology and Evolution , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 34
    • 0000057967 scopus 로고    scopus 로고
    • Small subunit ribosomal RNA sequences from selected dinoflagellates: testing classical evolutionary hypotheses with molecular systematic methods
    • Bhattacharya D. (Ed), Springer, Vienna, Austria
    • Saunders G.W.D., Hill R.A., Sexton J.P., and Andersen R.A. Small subunit ribosomal RNA sequences from selected dinoflagellates: testing classical evolutionary hypotheses with molecular systematic methods. In: Bhattacharya D. (Ed). Origins of Algae and their Plastids (1997), Springer, Vienna, Austria 237-259
    • (1997) Origins of Algae and their Plastids , pp. 237-259
    • Saunders, G.W.D.1    Hill, R.A.2    Sexton, J.P.3    Andersen, R.A.4
  • 37
    • 0019284286 scopus 로고
    • On dinoflagellate evolution
    • Taylor F.J.R. On dinoflagellate evolution. BioSystems 13 (1980) 65-108
    • (1980) BioSystems , vol.13 , pp. 65-108
    • Taylor, F.J.R.1
  • 38
    • 9644258535 scopus 로고    scopus 로고
    • Illumination or confusion? Dinoflagellate molecular phylogenetic data viewed from a primarily morphological standpoint
    • Taylor F.J.R. Illumination or confusion? Dinoflagellate molecular phylogenetic data viewed from a primarily morphological standpoint. Phycological Research 52 (2004) 308-324
    • (2004) Phycological Research , vol.52 , pp. 308-324
    • Taylor, F.J.R.1
  • 39
    • 0027968068 scopus 로고
    • CLUSTAL W: improving the sensitivity of progressive a multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice
    • Thompson J.D., Higgins D.G., and Gibson T.J. CLUSTAL W: improving the sensitivity of progressive a multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Research 22 (1994) 4673-4680
    • (1994) Nucleic Acids Research , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 40
    • 0034860524 scopus 로고    scopus 로고
    • First record of blooms of Cochlodinium sp. (Gymnodiniales, Dinophyceae) causing mortality of net-pen reared salmon on the west coast of Canada
    • Whyte I., Haigh N., Ginther N.G., and Keddy L.J. First record of blooms of Cochlodinium sp. (Gymnodiniales, Dinophyceae) causing mortality of net-pen reared salmon on the west coast of Canada. Phycologia 40 (2001) 298-304
    • (2001) Phycologia , vol.40 , pp. 298-304
    • Whyte, I.1    Haigh, N.2    Ginther, N.G.3    Keddy, L.J.4


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