The moss Physcomitrella patens: A novel model system for plant development and genomic studies

Cold Spring Harbor Protocols

Volumn 4, Issue 2, 2009, Pages

  Cove, David J ^a   Perroud, Pierre François ^a   Charron, Audra J ^a   McDaniel, Stuart F ^a   Khandelwal, Abha ^a   Quatrano, Ralph S ^a  

^a WASHINGTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ACTIN RELATED PROTEIN 2-3 COMPLEX; COMPLEMENTARY DNA; DNA FRAGMENT; GAMMA SECRETASE; PRESENILIN;

ALZHEIMER DISEASE; ARTICLE; BIOLOGICAL MODEL; CULTURE MEDIUM; CULTURE TECHNIQUE; ENZYME ACTIVITY; GENE DELETION; GENE FUNCTION; GENE ISOLATION; GENE SEQUENCE; GENOMICS; MICROARRAY ANALYSIS; MOSS; MUTAGENESIS; NONHUMAN; PHYSCOMITRELLA; PHYSCOMITRELLA PATENS; PLANT CELL CULTURE; PLANT DEVELOPMENT; PLANT GENETICS; PLANT GROWTH; PROTEIN FUNCTION; PROTOPLAST ISOLATION; RNA INTERFERENCE; SEQUENCE ANALYSIS; STRAIN DIFFERENCE;

BRYOPHYTA; PHYSCOMITRELLA PATENS;

EID: 65749099375     PISSN: None     EISSN: 15596095     Source Type: Journal    
DOI: 10.1101/pdb.emo115     Document Type: Article

References (45)

1. Axtell, M., Jan, C., Rajagopalan, R., and Bartel, D. 2006. A two-hit trigger for siRNA biogenesis in plants. Cell 127: 565-577.
2. Axtell, M.J., Snyder, J.A., and Bartel, D.P. 2007. Common functions for diverse small RNAs of land plants. Plant Cell 19: 1750-1769.
3. Bezanilla, M., Perroud, P.-F., Pan, A., Klueh, P., and Quatrano, R.S. 2005. An RNAi system in Physcomitrella patens with an internal marker for silencing allows for rapid identification of loss of function phenotypes. Plant Biol. 7: 251-257.
4. Chakhparonian, M. 2001. Développement d'outils de la mutagenèse ciblée par recombinaison homologue chez Physcomitrella patens. Ph.D. Thesis, Université de Lausanne, Lausanne, Switzerland.
5. Courtice, G.R.M. and Cove, D.J. 1978. Evidence for the restricted passage of metabolites into the sporophyte of the moss, Physcomitrella patens. J. Bryol. 10: 191-198.
6. Cove, D.J. 2005. The moss Physcomitrella patens. Annu. Rev. Genet. 39: 339-358.
7. Cove, D.J. and Quatrano, R.S. 2006. Agravitropic mutants of the moss Ceratodon purpureus do not complement mutants having a reversed gravitropic response. Plant Cell Environ. 29: 1379-1387.
8. Cove, D.J., Perroud, P.-F., Charron, A.J., McDaniel, S.F., Khandelwal, A., and Quatrano, R.S. 2009a. Culturing the moss Physcomitrella patens. Cold Spring Harb. Protoc. (this issue). doi: 10.1101/ pdb.prot5136.
9. Cove, D.J., Perroud, P.-F., Charron, A.J., McDaniel, S.F., Khandelwal, A., and Quatrano, R.S. 2009b. Chemical and UV mutagenesis of spores and protonemal tissue from the moss Physcomitrella patens. Cold Spring Harb. Protoc. (this issue). doi: 10.1101/pdb.prot5142.
10. Cove, D.J., Perroud, P.-F., Charron, A.J., McDaniel, S.F., Khandelwal, A., and Quatrano, R.S. 2009c. Transformation of the moss Physcomitrella patens using direct DNA uptake by protoplasts. Cold Spring Harb. Protoc. (this issue). doi: 10.1101/pdb.prot5143.
11. Cove, D.J., Perroud, P.-F., Charron, A.J., McDaniel, S.F., Khandelwal, A., and Quatrano, R.S. 2009d. Transformation of the moss Physcomitrella patens using T-DNA mutagenesis. Cold Spring Harb. Protoc. (this issue). doi: 10.1101/pdb.prot5144.
12. Cove, D.J., Perroud, P.-F., Charron, A.J., McDaniel, S.F., Khandelwal, A., and Quatrano, R.S. 2009e. Transformation of moss Physcomitrella patens gametophytes using a biolistic projectile delivery system. Cold Spring Harb. Protoc. (this issue). doi: 10.1101/pdb.prot5145.
13. Cove, D.J., Perroud, P.-F., Charron, A.J., McDaniel, S.F., Khandelwal, A., and Quatrano, R.S. 2009f. Somatic hybridization in the moss Physcomitrella patens using PEG-induced protoplast fusion. Cold Spring Harb. Protoc.(this issue). doi: 10.1101/pdb.prot5141.
14. Cove, D.J., Perroud, P.-F., Charron, A.J., McDaniel, S.F., Khandelwal, A., and Quatrano, R.S. 2009g. Isolation and regeneration of protoplasts of the moss Physcomitrella patens. Cold Spring Harb. Protoc. (this issue). doi: 10.1101/pdb.prot5140.
15. Cove, D.J., Perroud, P.-F., Charron, A.J., McDaniel, S.F., Khandelwal, A., and Quatrano, R.S. 2009h. Isolation of DNA, RNA, and protein from the moss Physcomitrella patens gametophytes. Cold Spring Harb. Protoc. (this issue). doi: 10.1101/pdb.prot5146.
16. Crum, H.A. and Anderson, L.E. 1981. Mosses of eastern North America, Vol. 1 and 2. Columbia University Press, New York.
17. Cuming, A.C., Cho, S.H., Kamisugi, Y., Graham, H., and Quatrano, R.S. 2007. Microarray analysis of transcriptional responses to abscisic acid and osmotic, salt, and drought stress in the moss, Physcomitrella patens. New Phytol. 176: 275-287.
18. Engel, P.P. 1968. The induction of biochemical and morphological mutants in the moss, Physcomitrella patens. Am. J. Bot. 55: 438-446.
19. Harries, P., Pan, A., and Quatrano, R.S. 2005. Actin-related protein 2/3 complex component ARPC1 is required for proper cell morphogenesis and polarized cell growth in Physcomitrella patens. Plant Cell 17: 2327-2339.
20. Hayashida, A., Takechi, K., Sugiyama, M., Kubo, M., Itoh, R.D., Takio, S., Fujita, T., Hiwatashi, Y., Hasebe, M., and Takano, H. 2005. Isolation of mutant lines with decreased numbers of chloroplasts per cell from a tagged mutant library of the moss Physcomitrella patens. Plant Biol. 7: 300-306.
21. Heitz, E. 1928. Das Heterochromatin der Moose. I. Jahrb. Wiss. Bot 69: 762-818.
22. 5-desaturase gene involved in arachidonic and eicosapentaenoic acids biosynthesis. J. Biol. Chem. 281: 21988-21997.
23. Kamisugi, Y., Cuming, A.C., and Cove, D.J. 2005. Parameters determining the efficiency of gene targeting in the moss Physcomitrella patens. Nucleic Acids Res. 33: e173. doi: 10.1093/nar/gni172.
24. Kamisugi, Y., Schlink, K., Rensing, S.A., Schween, G., von Stackelberg, M., Cuming, A.C., Reski, R., and Cove, D.J. 2006. The mechanism of gene targeting in Physcomitrella patens: Homologous recombination, concatenation and multiple integration. Nucleic Acids Res. 34: 6205-6214.
25. Khandelwal, A., Chandu, D., Roe, C.M., Kopan, R., and Quatrano, R.S. 2007. Moonlighting activity of presenilin in plants is independent of γ-secretase and evolutionarily conserved. Proc. Natl. Acad. Sci. 104: 13337-13342.
26. Maizel, A., Busch, M.A., Tanahashi, T., Perkovic, J., Kato, M., Hasebe, M., and Weigel, D. 2005. The floral regulator LEAFY evolves by substitutions in the DNA binding domain. Science 308: 260-263.
27. Marella, H.H., Sakata, Y., and Quatrano, R.S. 2006. Characterization and functional analysis of ABSCISIC ACID INSENSITIVE3-like genes from Physcomitrella patens. Plant J. 46: 1032-1044.
28. McDaniel, S.F., Willis, J.H., and Shaw, A.J. 2008. The genetic basis of abnormal development in interpopulation hybrids of the moss Ceratodon purpureus. Genetics 179: 1425-1435.
29. Menand, B., Yi, K.K., Jouannic, S., Hoffmann, L., Ryan, E., Linstead, P., Schaefer, D.G., and Dolan, L. 2007. An ancient mechanism controls the development of cells with a rooting function in land plants. Science 316: 1477-1480.
30. Nishiyama, T., Hiwatashi, Y., Sakakibara, I., Kato, M., and Hasebe, M. 2000. Tagged mutagenesis and gene-trap in the moss, Physcomitrella patens, by shuttle mutagenesis. DNA Res. 7: 9-17.
31. Nishiyama, T., Fujita, T., Shin-I, T., Seki, M., Nishide, H., Uchiyama, I., Kamiya, A., Carninci, P., Hayashizaki, Y., Shinozaki, K., et al. 2003. Comparative genomics of Physcomitrella patens gametophytic transcriptome and Arabidopsis thaliana: Implication for land plant evolution. Proc. Natl. Acad. Sci. 100: 8007-8012.
32. Oliver, M.J., Velten, J., and Mishler, B.D. 2004. Desiccation tolerance in bryophytes: A reflection of the primitive strategy for plant survival in dehydrating habitats? Integr. Comp. Biol. 45: 788-799.
33. Perroud, P.-F. and Quatrano, R.S. 2006. The role of ARPC4 in tip growth and alignment of the polar axis in filaments of Physcomitrella patens. Cell Motil. Cytoskelet. 63: 162-171.
34. Perroud, P.-F. and Quatrano, R.S. 2008. BRICK1 is required for apical cell growth in filaments of the moss Physcomitrella patens but not for gametophore morphology. Plant Cell 20: 411-422.
35. Pettet, A. 1964. Hybrid sporophytes in the Funariaceae. Trans. Br. Bryol. Soc. 4: 642-648.
36. Quatrano, R.S., McDaniel, S.F., Khandelwal, A., Perroud, P.-F., and Cove, D.J. 2007. Physcomitrella patens: Mosses enter the genomic age. Curr. Opin. Plant Biol. 10: 182-189.
37. Rensing, S.A., Lang, D., Zimmer, A., Terry, A., Salamov, A., Shapiro, H., Nishiyama, T., Perroud, P.-F., Lindquist, E.A., Kamisugi, Y., et al. 2008. The Physcomitrella genome reveals insights into the conquest of land by plants. Science 319: 64-69.
38. Saidi, Y., Finka, A., Chakhporanian, M., Zryd, J.P., Schaefer, D.G., and Goloubinoff, P. 2005. Controlled expression of recombinant proteins in Physcomitrella patens by a conditional heatshock promoter: A tool for plant research and biotechnology. Plant Mol. Biol. 59: 697-711.
39. Schulte, J., Erxleben, A., Schween, G., and Reski, R. 2006. High throughput metabolic screen of Physcomitrella transformants. Bryologist 109: 247-256.
40. Schween, G., Egener, T., Fritzowsky, D., Granado, J., Guitton, M.C., Hartmann, N., Hohe, A., Holtorf, H., Lang, D., Lucht, J.M., et al. 2005. Large-scale analysis of 73,329 Physcomitrella plants transformed with different gene disruption libraries: Production parameters and mutant phenotypes. Plant Biol. 7: 228-237.
41. Thelander, M., Olsson, T., and Ronne, H. 2005. Effect of the energy supply on filamentous growth and development in Physcomitrella patens. J. Exp. Bot. 56: 653-662.
42. Vidali, L., Augustine, R.C., Kleinman, K.P., and Bezanilla, M. 2007. Profiling is essential for tip growth in the moss Physcomitrella patens. Plant Cell 19: 3705-3722.
43. von Stackelberg, M., Rensing, S., and Reski, R. 2006. Identification of genic moss SSR markers and a comparative analysis of twenty-four algal and plant gene indices reveal species-specific rather than group-specific characteristics of microsatellites. BMC Plant Biol. 6: 9. doi: 10.1186/1471-2229-6-9.
44. von Wettstein, F. 1924. Morphologie und Physiologie des Formwechsels der Moose auf genetischler Grundlage I. Z. Indukt. Abstammungs-Vererbungesl 33: 1-236.
45. You, Y.S., Marella, H.H., Zentella, R., Zhou, Y., Ulmasov, T., Ho, T.-H.D., and Quatrano, R.S. 2006. Use of bacterial quorum sensing components to regulate gene expression in plants. Plant Physiol. 140: 1205-1212.