-
1
-
-
33745936936
-
Mosses as model systems for the study of metabolism and development
-
Cove D., Bezanilla M., Harries P., and Quatrano R. Mosses as model systems for the study of metabolism and development. Annu Rev Plant Biol 57 (2006) 497-520
-
(2006)
Annu Rev Plant Biol
, vol.57
, pp. 497-520
-
-
Cove, D.1
Bezanilla, M.2
Harries, P.3
Quatrano, R.4
-
2
-
-
29444435089
-
The moss Physcomitrella patens
-
Cove D.J. The moss Physcomitrella patens. Annu Rev Genet 39 (2005) 339-358
-
(2005)
Annu Rev Genet
, vol.39
, pp. 339-358
-
-
Cove, D.J.1
-
3
-
-
33644862075
-
The use of mosses for the study of cell polarity
-
Wood A.J., Oliver M.J., and Cove D.J. (Eds)
-
Cove D.J., and Quatrano R.S. The use of mosses for the study of cell polarity. In: Wood A.J., Oliver M.J., and Cove D.J. (Eds). New Frontiers of Biology (2004) 183-203
-
(2004)
New Frontiers of Biology
, pp. 183-203
-
-
Cove, D.J.1
Quatrano, R.S.2
-
4
-
-
19444377784
-
Moss (Physcomitrella patens) functional genomics - gene discovery tool development, with implication for crop plants and human health
-
Reski R., and Frank W. Moss (Physcomitrella patens) functional genomics - gene discovery tool development, with implication for crop plants and human health. Brief Funct Genomic Proteomic 4 (2005) 48-57
-
(2005)
Brief Funct Genomic Proteomic
, vol.4
, pp. 48-57
-
-
Reski, R.1
Frank, W.2
-
5
-
-
33746718089
-
Identification of genic moss SSR markers and a comparative analysis of twenty-four algal and plant gene indices reveal species-specific rather than group-specific characteristics of microsatellites
-
von Stackelberg M., Rensing S., and Reski R. Identification of genic moss SSR markers and a comparative analysis of twenty-four algal and plant gene indices reveal species-specific rather than group-specific characteristics of microsatellites. BMC Plant Biol 6 (2006) 9
-
(2006)
BMC Plant Biol
, vol.6
, pp. 9
-
-
von Stackelberg, M.1
Rensing, S.2
Reski, R.3
-
6
-
-
27644515982
-
Controlled expression of recombinant proteins in Physcomitrella patens by a conditional heat-shock promoter: a tool for plant research and biotechnology
-
This biotechnologically oriented publication establishes the use of the soybean heat shock promoter (Gmhsp17.3B promoter) in P. patens. Measurements of protein accumulation and activity of GUS after heat shock show that this promoter has very low leakiness in the non-induced state and rapid and very high expression upon induction. Furthermore, the strength of the induction can be modulated by adjusting the inductive treatment (e.g. the duration and severity of the heat shock).
-
Saidi Y., Finka A., Chakhporanian M., Zryd J.P., Schaefer D.G., and Goloubinoff P. Controlled expression of recombinant proteins in Physcomitrella patens by a conditional heat-shock promoter: a tool for plant research and biotechnology. Plant Mol Biol 59 (2005) 697-711. This biotechnologically oriented publication establishes the use of the soybean heat shock promoter (Gmhsp17.3B promoter) in P. patens. Measurements of protein accumulation and activity of GUS after heat shock show that this promoter has very low leakiness in the non-induced state and rapid and very high expression upon induction. Furthermore, the strength of the induction can be modulated by adjusting the inductive treatment (e.g. the duration and severity of the heat shock).
-
(2005)
Plant Mol Biol
, vol.59
, pp. 697-711
-
-
Saidi, Y.1
Finka, A.2
Chakhporanian, M.3
Zryd, J.P.4
Schaefer, D.G.5
Goloubinoff, P.6
-
7
-
-
33745441558
-
Use of bacterial quorum sensing components to regulate gene expression in plants
-
You Y.S., Marella H.H., Zentella R., Zhou Y., Ulmasov T., Ho T.H.D., and Quatrano R.S. Use of bacterial quorum sensing components to regulate gene expression in plants. Plant Physiol 140 (2006) 1205-1212
-
(2006)
Plant Physiol
, vol.140
, pp. 1205-1212
-
-
You, Y.S.1
Marella, H.H.2
Zentella, R.3
Zhou, Y.4
Ulmasov, T.5
Ho, T.H.D.6
Quatrano, R.S.7
-
8
-
-
17844388291
-
Isolation of mutant lines with decreased numbers of chloroplasts per cell from a tagged mutant library of the moss Physcomitrella patens
-
Hayashida A., Takechi K., Sugiyama M., Kubo M., Itoh R.D., Takio S., Fujita T., Hiwatashi Y., Hasebe M., and Takano H. Isolation of mutant lines with decreased numbers of chloroplasts per cell from a tagged mutant library of the moss Physcomitrella patens. Plant Biol 7 (2005) 300-306
-
(2005)
Plant Biol
, vol.7
, pp. 300-306
-
-
Hayashida, A.1
Takechi, K.2
Sugiyama, M.3
Kubo, M.4
Itoh, R.D.5
Takio, S.6
Fujita, T.7
Hiwatashi, Y.8
Hasebe, M.9
Takano, H.10
-
9
-
-
0034723470
-
Tagged mutagenesis and gene-trap in the moss, Physcomitrella patens, by shuttle mutagenesis
-
Nishiyama T., Hiwatashi Y., Sakakibara I., Kato M., and Hasebe M. Tagged mutagenesis and gene-trap in the moss, Physcomitrella patens, by shuttle mutagenesis. DNA Res 7 (2000) 9-17
-
(2000)
DNA Res
, vol.7
, pp. 9-17
-
-
Nishiyama, T.1
Hiwatashi, Y.2
Sakakibara, I.3
Kato, M.4
Hasebe, M.5
-
10
-
-
20144376849
-
Large-scale analysis of 73,329 Physcomitrella plants transformed with different gene disruption libraries: production parameters and mutant phenotypes
-
Schween G., Egener T., Fritzowsky D., Granado J., Guitton M.C., Hartmann N., Hohe A., Holtorf H., Lang D., Lucht J.M., et al. Large-scale analysis of 73,329 Physcomitrella plants transformed with different gene disruption libraries: production parameters and mutant phenotypes. Plant Biol 7 (2005) 228-237
-
(2005)
Plant Biol
, vol.7
, pp. 228-237
-
-
Schween, G.1
Egener, T.2
Fritzowsky, D.3
Granado, J.4
Guitton, M.C.5
Hartmann, N.6
Hohe, A.7
Holtorf, H.8
Lang, D.9
Lucht, J.M.10
-
11
-
-
33646748566
-
High throughput metabolic screen of Physcomitrella transformants
-
Schulte J., Erxleben A., Schween G., and Reski R. High throughput metabolic screen of Physcomitrella transformants. Bryologist 109 (2006) 247-256
-
(2006)
Bryologist
, vol.109
, pp. 247-256
-
-
Schulte, J.1
Erxleben, A.2
Schween, G.3
Reski, R.4
-
12
-
-
33744963509
-
Agravitropic mutants of the moss Ceratodon purpureus do not complement mutants having a reversed gravitropic response
-
Cove D.J., and Quatrano R.S. Agravitropic mutants of the moss Ceratodon purpureus do not complement mutants having a reversed gravitropic response. Plant Cell Environ 29 (2006) 1379-1387
-
(2006)
Plant Cell Environ
, vol.29
, pp. 1379-1387
-
-
Cove, D.J.1
Quatrano, R.S.2
-
13
-
-
20144383372
-
An RNAi system in Physcomitrella patens with an internal marker for silencing allows for rapid identification of loss of function phenotypes
-
Bezanilla M., Perroud P.F., Pan A., Klueh P., and Quatrano R.S. An RNAi system in Physcomitrella patens with an internal marker for silencing allows for rapid identification of loss of function phenotypes. Plant Biol 7 (2005) 251-257
-
(2005)
Plant Biol
, vol.7
, pp. 251-257
-
-
Bezanilla, M.1
Perroud, P.F.2
Pan, A.3
Klueh, P.4
Quatrano, R.S.5
-
14
-
-
26844509545
-
Actin-related protein2/3 complex component ARPC1 is required for proper cell morphogenesis and polarized cell growth in Physcomitrella patens
-
Harries P.A., Pan A., and Quatrano R.S. Actin-related protein2/3 complex component ARPC1 is required for proper cell morphogenesis and polarized cell growth in Physcomitrella patens. Plant Cell 17 (2005) 2327-2339
-
(2005)
Plant Cell
, vol.17
, pp. 2327-2339
-
-
Harries, P.A.1
Pan, A.2
Quatrano, R.S.3
-
15
-
-
0035115728
-
Gene targeting in Physcomitrella patens
-
Schaefer D.G. Gene targeting in Physcomitrella patens. Curr Opin Plant Biol 4 (2001) 143-150
-
(2001)
Curr Opin Plant Biol
, vol.4
, pp. 143-150
-
-
Schaefer, D.G.1
-
16
-
-
33746857255
-
5-desaturase gene involved in arachidonic and eicosapentaenoic acids biosynthesis
-
5-desaturase gene involved in arachidonic and eicosapentaenoic acids biosynthesis. J Biol Chem 281 (2006) 21988-21997
-
(2006)
J Biol Chem
, vol.281
, pp. 21988-21997
-
-
Kaewsuwan, S.1
Cahoon, E.B.2
Perroud, P.F.3
Wiwat, C.4
Panvisavas, N.5
Quatrano, R.S.6
Cove, D.J.7
Bunyapraphatsara, N.8
-
17
-
-
33645050851
-
Arabinogalactan proteins are required for apical cell extension in the moss Physcomitrella patens
-
Lee K.J.D., Sakata Y., Mau S.L., Pettolino F., Bacic A., Quatrano R.S., Knight C.D., and Knox J.P. Arabinogalactan proteins are required for apical cell extension in the moss Physcomitrella patens. Plant Cell 17 (2005) 3051-3065
-
(2005)
Plant Cell
, vol.17
, pp. 3051-3065
-
-
Lee, K.J.D.1
Sakata, Y.2
Mau, S.L.3
Pettolino, F.4
Bacic, A.5
Quatrano, R.S.6
Knight, C.D.7
Knox, J.P.8
-
18
-
-
33644856776
-
The role of ARPC4 in tip growth and alignment of the polar axis in filaments of Physcomitrella patens
-
Perroud P.F., and Quatrano R.S. The role of ARPC4 in tip growth and alignment of the polar axis in filaments of Physcomitrella patens. Cell Motil Cytoskeleton 63 (2006) 162-171
-
(2006)
Cell Motil Cytoskeleton
, vol.63
, pp. 162-171
-
-
Perroud, P.F.1
Quatrano, R.S.2
-
19
-
-
28544435245
-
Parameters determining the efficiency of gene targeting in the moss Physcomitrella patens
-
A detailed study of the parameters that affect gene targeting. In an illustrative example, two constructs containing 3681 bp of homologous DNA were compared. 95% of transgenics were targeted by a construct that has 1119 bp and 2562 bp flanking regions, and of these, 71.4% showed TGR and 28.6% showed TGI. When using a construct of 242 bp and 3439 bp sequences flanking the selection cassette, only 67% of transgenics were targeted. Of these, 8.5% showed TGR and 91.5% showed TGI.
-
Kamisugi Y., Cuming A.C., and Cove D.J. Parameters determining the efficiency of gene targeting in the moss Physcomitrella patens. Nucleic Acids Res 33 (2005) e173. A detailed study of the parameters that affect gene targeting. In an illustrative example, two constructs containing 3681 bp of homologous DNA were compared. 95% of transgenics were targeted by a construct that has 1119 bp and 2562 bp flanking regions, and of these, 71.4% showed TGR and 28.6% showed TGI. When using a construct of 242 bp and 3439 bp sequences flanking the selection cassette, only 67% of transgenics were targeted. Of these, 8.5% showed TGR and 91.5% showed TGI.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Kamisugi, Y.1
Cuming, A.C.2
Cove, D.J.3
-
20
-
-
33845653228
-
The mechanism of gene targeting in Physcomitrella patens: homologous recombination, concatenation and multiple integration
-
This paper provides the evidence upon which the models for TGI outlined in Figure 2 are based.
-
Kamisugi Y., Schlink K., Rensing S.A., Schween G., von Stackelberg M., Cuming A.C., Reski R., and Cove D.J. The mechanism of gene targeting in Physcomitrella patens: homologous recombination, concatenation and multiple integration. Nucleic Acids Res 34 (2006) 6205-6214. This paper provides the evidence upon which the models for TGI outlined in Figure 2 are based.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 6205-6214
-
-
Kamisugi, Y.1
Schlink, K.2
Rensing, S.A.3
Schween, G.4
von Stackelberg, M.5
Cuming, A.C.6
Reski, R.7
Cove, D.J.8
-
21
-
-
18044363514
-
Targeted site-directed mutagenesis of a heme oxygenase locus by gene replacement in the moss Ceratodon purpureus
-
Brucker G., Mittmann F., Hartmann E., and Lamparter T. Targeted site-directed mutagenesis of a heme oxygenase locus by gene replacement in the moss Ceratodon purpureus. Planta 220 (2005) 864-874
-
(2005)
Planta
, vol.220
, pp. 864-874
-
-
Brucker, G.1
Mittmann, F.2
Hartmann, E.3
Lamparter, T.4
-
22
-
-
31544454209
-
MSH2 is essential for the preservation of genome integrity and prevents homeologous recombination in the moss Physcomitrella patens
-
Trouiller B., Schaefer D.G., Charlot F., and Nogue F. MSH2 is essential for the preservation of genome integrity and prevents homeologous recombination in the moss Physcomitrella patens. Nucleic Acids Res 34 (2006) 232-242
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 232-242
-
-
Trouiller, B.1
Schaefer, D.G.2
Charlot, F.3
Nogue, F.4
-
23
-
-
33845431616
-
Plant cytochrome P450s from moss to poplar
-
Nelson D.R. Plant cytochrome P450s from moss to poplar. Phytochemistry Rev 5 (2006) 193-204
-
(2006)
Phytochemistry Rev
, vol.5
, pp. 193-204
-
-
Nelson, D.R.1
-
24
-
-
33750505476
-
Identification and functional analysis of bifunctional ent-kaurene synthase from the moss Physcomitrella patens
-
Hayashi K., Kawaide H., Notomi M., Sakigi Y., Matsuo A., and Nozaki H. Identification and functional analysis of bifunctional ent-kaurene synthase from the moss Physcomitrella patens. FEBS Lett 580 (2006) 6175-6181
-
(2006)
FEBS Lett
, vol.580
, pp. 6175-6181
-
-
Hayashi, K.1
Kawaide, H.2
Notomi, M.3
Sakigi, Y.4
Matsuo, A.5
Nozaki, H.6
-
25
-
-
0038270852
-
Comparative genomics of Physcomitrella patens gametophytic transcriptome and Arabidopsis thaliana: implication for land plant evolution
-
Nishiyama T., Fujita T., Shin-I T., Seki M., Nishide H., Uchiyama I., Kamiya A., Carninci P., Hayashizaki Y., Shinozaki K., et al. Comparative genomics of Physcomitrella patens gametophytic transcriptome and Arabidopsis thaliana: implication for land plant evolution. Proc Natl Acad Sci USA 100 (2003) 8007-8012
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 8007-8012
-
-
Nishiyama, T.1
Fujita, T.2
Shin-I, T.3
Seki, M.4
Nishide, H.5
Uchiyama, I.6
Kamiya, A.7
Carninci, P.8
Hayashizaki, Y.9
Shinozaki, K.10
-
26
-
-
20144381338
-
Protein encoding genes in an ancient plant: analysis of codon usage, retained genes and splice sites in a moss, Physcomitrella patens
-
The authors describe the most complete genome-wide analysis in P. patens to date. Their comparison of P. patens transcripts with the Arabidopsis and rice transcriptomes clearly confirms the close relationship between these land plants, but reveals specificity in moss gene structure, coding sequence composition and codon usage. The authors also establish that although a fraction of the P. patens transcripts have no equivalents in the plant kingdom, some show high similarity with transcripts of non-plant taxa. Finally, they develop a splice-site prediction tool specifically adapted to P. patens, which has been made available at http://www.cosmoss.org.
-
Rensing S.A., Fritzowsky D., Lang D., and Reski R. Protein encoding genes in an ancient plant: analysis of codon usage, retained genes and splice sites in a moss, Physcomitrella patens. BMC Genomics 6 (2005) 43-56. The authors describe the most complete genome-wide analysis in P. patens to date. Their comparison of P. patens transcripts with the Arabidopsis and rice transcriptomes clearly confirms the close relationship between these land plants, but reveals specificity in moss gene structure, coding sequence composition and codon usage. The authors also establish that although a fraction of the P. patens transcripts have no equivalents in the plant kingdom, some show high similarity with transcripts of non-plant taxa. Finally, they develop a splice-site prediction tool specifically adapted to P. patens, which has been made available at http://www.cosmoss.org.
-
(2005)
BMC Genomics
, vol.6
, pp. 43-56
-
-
Rensing, S.A.1
Fritzowsky, D.2
Lang, D.3
Reski, R.4
-
27
-
-
20144376094
-
Representation and high-quality annotation of the Physcomitrella patens transcriptome demonstrates a high proportion of proteins involved in metabolism in mosses
-
Lang D., Eisinger J., Reski R., and Rensing S.A. Representation and high-quality annotation of the Physcomitrella patens transcriptome demonstrates a high proportion of proteins involved in metabolism in mosses. Plant Biol 7 (2005) 238-250
-
(2005)
Plant Biol
, vol.7
, pp. 238-250
-
-
Lang, D.1
Eisinger, J.2
Reski, R.3
Rensing, S.A.4
-
28
-
-
33746545579
-
2+ stress in Physcomitrella patens - combined transcript, enzyme and metabolite profiling
-
2+ stress in Physcomitrella patens - combined transcript, enzyme and metabolite profiling. Plant Cell Environ 29 (2006) 1801-1811
-
(2006)
Plant Cell Environ
, vol.29
, pp. 1801-1811
-
-
Rother, M.1
Krauss, G.J.2
Grass, G.3
Wesenberg, D.4
-
29
-
-
33748301955
-
Rapid alteration of the phosphoproteome in the moss Physcomitrella patens after cytokinin treatment
-
Heintz D., Erxleben A., High A.A., Wurtz V., Reski R., Van Dorsselaer A., and Sarnighausen E. Rapid alteration of the phosphoproteome in the moss Physcomitrella patens after cytokinin treatment. J Proteome Res 5 (2006) 2283-2293
-
(2006)
J Proteome Res
, vol.5
, pp. 2283-2293
-
-
Heintz, D.1
Erxleben, A.2
High, A.A.3
Wurtz, V.4
Reski, R.5
Van Dorsselaer, A.6
Sarnighausen, E.7
-
30
-
-
33644808731
-
A novel plant major intrinsic protein in Physcomitrella patens most similar to bacterial glycerol channels
-
Gustavsson S., Lebrun A.S., Norden K., Chaumont F., and Johanson U. A novel plant major intrinsic protein in Physcomitrella patens most similar to bacterial glycerol channels. Plant Physiol 139 (2005) 287-295
-
(2005)
Plant Physiol
, vol.139
, pp. 287-295
-
-
Gustavsson, S.1
Lebrun, A.S.2
Norden, K.3
Chaumont, F.4
Johanson, U.5
-
32
-
-
33750440526
-
A two-hit trigger for siRNA biogenesis in plants
-
A thorough and detailed compendium of the small RNAs (both miRNA and siRNA) from moss genomic sequence traces. Analysis of the P. patens trans-acting siRNAs (tasiRNAs) led to the finding that each of the four PpTAS loci contains dual miR390 complementary sites, both of which were cleaved and defined the intervening cleavage product. A similar finding in Arabidopsis results in an evolutionary conserved model for a two-hit trigger for siRNA biogenesis.
-
Axtell M.J., Jan C., Rajagopalan R., and Bartel D. A two-hit trigger for siRNA biogenesis in plants. Cell 127 (2006) 565-577. A thorough and detailed compendium of the small RNAs (both miRNA and siRNA) from moss genomic sequence traces. Analysis of the P. patens trans-acting siRNAs (tasiRNAs) led to the finding that each of the four PpTAS loci contains dual miR390 complementary sites, both of which were cleaved and defined the intervening cleavage product. A similar finding in Arabidopsis results in an evolutionary conserved model for a two-hit trigger for siRNA biogenesis.
-
(2006)
Cell
, vol.127
, pp. 565-577
-
-
Axtell, M.J.1
Jan, C.2
Rajagopalan, R.3
Bartel, D.4
-
33
-
-
32944464673
-
Cloning and characterization of micro-RNAs from moss
-
Arazi T., Talmor-Neiman M., Stav R., Riese M., Huijser P., and Baulcombe D.C. Cloning and characterization of micro-RNAs from moss. Plant J 43 (2005) 837-848
-
(2005)
Plant J
, vol.43
, pp. 837-848
-
-
Arazi, T.1
Talmor-Neiman, M.2
Stav, R.3
Riese, M.4
Huijser, P.5
Baulcombe, D.C.6
-
34
-
-
1842484780
-
Gene regulation: ancient microRNA target sequences in plants
-
Floyd S.K., and Bowman J.L. Gene regulation: ancient microRNA target sequences in plants. Nature 428 (2004) 485-486
-
(2004)
Nature
, vol.428
, pp. 485-486
-
-
Floyd, S.K.1
Bowman, J.L.2
-
35
-
-
3242704221
-
Genetic regulation of time to flower in Arabidopsis thaliana
-
Komeda Y. Genetic regulation of time to flower in Arabidopsis thaliana. Annu Rev Plant Biol 55 (2004) 521-535
-
(2004)
Annu Rev Plant Biol
, vol.55
, pp. 521-535
-
-
Komeda, Y.1
-
36
-
-
0036270393
-
Abscisic acid signaling in seeds and seedlings
-
Finkelstein R.R., Gampala S., and Rock C. Abscisic acid signaling in seeds and seedlings. Plant Cell 14 (2002) S15-S45
-
(2002)
Plant Cell
, vol.14
-
-
Finkelstein, R.R.1
Gampala, S.2
Rock, C.3
-
39
-
-
20444402692
-
Abscisic acid biosynthesis and catabolism
-
Nambara E., and Marion-Poll A. Abscisic acid biosynthesis and catabolism. Annu Rev Plant Biol 56 (2005) 165-185
-
(2005)
Annu Rev Plant Biol
, vol.56
, pp. 165-185
-
-
Nambara, E.1
Marion-Poll, A.2
-
40
-
-
14944367017
-
Cold acclimation in bryophytes: low-temperature-induced freezing tolerance in Physcomitrella patens is associated with increases in expression levels of stress-related genes but not with increase in level of endogenous abscisic acid
-
Minami A., Nagao M., Ikegami K., Koshiba T., Arakawa K., Fujikawa S., and Takezawa D. Cold acclimation in bryophytes: low-temperature-induced freezing tolerance in Physcomitrella patens is associated with increases in expression levels of stress-related genes but not with increase in level of endogenous abscisic acid. Planta 220 (2005) 414-423
-
(2005)
Planta
, vol.220
, pp. 414-423
-
-
Minami, A.1
Nagao, M.2
Ikegami, K.3
Koshiba, T.4
Arakawa, K.5
Fujikawa, S.6
Takezawa, D.7
-
41
-
-
33645102313
-
Accumulation of theanderose in association with development of freezing tolerance in the moss Physcomitrella patens
-
Nagao M., Oku K., Minami A., Mizuno K., Sakurai M., Arakawa K., Fujikawa S., and Takezawa D. Accumulation of theanderose in association with development of freezing tolerance in the moss Physcomitrella patens. Phytochemistry 67 (2006) 702-709
-
(2006)
Phytochemistry
, vol.67
, pp. 702-709
-
-
Nagao, M.1
Oku, K.2
Minami, A.3
Mizuno, K.4
Sakurai, M.5
Arakawa, K.6
Fujikawa, S.7
Takezawa, D.8
-
42
-
-
0028830140
-
Molecular responses to abscisic acid and stress are conserved between moss and cereals
-
Knight C.D., Sehgal A., Atwal K., Wallace J.C., Cove D.J., Coates D., Quatrano R.S., Bahadur S., Stockley P.G., and Cuming A.C. Molecular responses to abscisic acid and stress are conserved between moss and cereals. Plant Cell 7 (1995) 499-506
-
(1995)
Plant Cell
, vol.7
, pp. 499-506
-
-
Knight, C.D.1
Sehgal, A.2
Atwal, K.3
Wallace, J.C.4
Cove, D.J.5
Coates, D.6
Quatrano, R.S.7
Bahadur, S.8
Stockley, P.G.9
Cuming, A.C.10
-
43
-
-
33745207298
-
Characterization and functional analysis of ABSCISIC ACID INSENSITIVE3-like genes from Physcomitrella patens
-
This paper identifies a limited set of genes that are regulated correctly in seeds when the transcription factor ABI3 homolog from P. patens (PpABI3) is expressed in transgenic abi3-6 mutant Arabidopsis. Not all genes or seed traits are complemented, however. For example, although transgenic seeds containing PpABI3 are formed, they are not desiccation-tolerant. This would indicate that those Arabidopsis genes that are not properly regulated by PpABI3 could account for the lack of complementation of this phenotype. This reference serves as an example of how comparative functional genomics can lead to enhanced understanding of gene function and the role of specific genes in complex traits.
-
Marella H.H., Sakata Y., and Quatrano R.S. Characterization and functional analysis of ABSCISIC ACID INSENSITIVE3-like genes from Physcomitrella patens. Plant J 46 (2006) 1032-1044. This paper identifies a limited set of genes that are regulated correctly in seeds when the transcription factor ABI3 homolog from P. patens (PpABI3) is expressed in transgenic abi3-6 mutant Arabidopsis. Not all genes or seed traits are complemented, however. For example, although transgenic seeds containing PpABI3 are formed, they are not desiccation-tolerant. This would indicate that those Arabidopsis genes that are not properly regulated by PpABI3 could account for the lack of complementation of this phenotype. This reference serves as an example of how comparative functional genomics can lead to enhanced understanding of gene function and the role of specific genes in complex traits.
-
(2006)
Plant J
, vol.46
, pp. 1032-1044
-
-
Marella, H.H.1
Sakata, Y.2
Quatrano, R.S.3
-
44
-
-
16444377659
-
The floral regulator LEAFY evolves by substitutions in the DNA binding domain
-
This is the first experimental analysis of gene function across land plants. Diverse lineages of eukaryotes are built from a common genetic toolkit. In some groups, changes in cis-regulation of gene expression are a key factor in generating phenotypic variation. The authors of this paper use a variety of transgenic assays to demonstrate that DNA binding of a trans-acting factor is responsible for the evolution of the LFY regulatory network in several land plant lineages.
-
Maizel A., Busch M.A., Tanahashi T., Perkovic J., Kato M., Hasebe M., and Weigel D. The floral regulator LEAFY evolves by substitutions in the DNA binding domain. Science 308 (2005) 260-263. This is the first experimental analysis of gene function across land plants. Diverse lineages of eukaryotes are built from a common genetic toolkit. In some groups, changes in cis-regulation of gene expression are a key factor in generating phenotypic variation. The authors of this paper use a variety of transgenic assays to demonstrate that DNA binding of a trans-acting factor is responsible for the evolution of the LFY regulatory network in several land plant lineages.
-
(2005)
Science
, vol.308
, pp. 260-263
-
-
Maizel, A.1
Busch, M.A.2
Tanahashi, T.3
Perkovic, J.4
Kato, M.5
Hasebe, M.6
Weigel, D.7
-
45
-
-
17644383427
-
Diversification of gene function: homologs of the floral regulator FLO/LFY control the first zygotic cell division in the moss Physcomitrella patens
-
Tanahashi T., Sumikawa N., Kato M., and Hasebe M. Diversification of gene function: homologs of the floral regulator FLO/LFY control the first zygotic cell division in the moss Physcomitrella patens. Development 132 (2005) 1727-1736
-
(2005)
Development
, vol.132
, pp. 1727-1736
-
-
Tanahashi, T.1
Sumikawa, N.2
Kato, M.3
Hasebe, M.4
-
46
-
-
0034625265
-
Endless forms: the evolution of gene regulation and morphological diversity
-
Carroll S.B. Endless forms: the evolution of gene regulation and morphological diversity. Cell 101 (2000) 577-580
-
(2000)
Cell
, vol.101
, pp. 577-580
-
-
Carroll, S.B.1
-
47
-
-
33644796518
-
A conserved transcription factor mediates nuclear control of organelle biogenesis in anciently diverged land plants
-
The Golden2-like (GLK2) transcription factor that regulates chloroplast development was targeted to determine whether chloroplast biogenesis is conserved between P. patens and angiosperms. Both P. patens and angiosperms have two genes that encode GLK2, which have overlapping function in Arabidopsis and P. patens but not in maize. Disruption of a single gene in P. patens has no effect, whereas a double disruptant is pale green and has fewer thylakoid stacks. In Arabidopsis, reduced chlorophyll levels were correlated with reduced expression of light-harvesting chlorophyll a/b binding protein (LHCB), glutamyl tRNA reductase (AtHema1) and chlorophyll a oxygenase (AtCAO). Expression of the corresponding genes is reduced by at least 60% in P. patens double disruptants. Overexpression of Ppglk1 is able to rescue partially the defect in Arabidopsis glk1 glk2 double mutants. The expression patterns of AtLHCB, AtHema1 and AtCAO in complemented lines correlates with the phenotype.
-
Yasumura Y., Moylan E.C., and Langdale J.A. A conserved transcription factor mediates nuclear control of organelle biogenesis in anciently diverged land plants. Plant Cell 17 (2005) 1894-1907. The Golden2-like (GLK2) transcription factor that regulates chloroplast development was targeted to determine whether chloroplast biogenesis is conserved between P. patens and angiosperms. Both P. patens and angiosperms have two genes that encode GLK2, which have overlapping function in Arabidopsis and P. patens but not in maize. Disruption of a single gene in P. patens has no effect, whereas a double disruptant is pale green and has fewer thylakoid stacks. In Arabidopsis, reduced chlorophyll levels were correlated with reduced expression of light-harvesting chlorophyll a/b binding protein (LHCB), glutamyl tRNA reductase (AtHema1) and chlorophyll a oxygenase (AtCAO). Expression of the corresponding genes is reduced by at least 60% in P. patens double disruptants. Overexpression of Ppglk1 is able to rescue partially the defect in Arabidopsis glk1 glk2 double mutants. The expression patterns of AtLHCB, AtHema1 and AtCAO in complemented lines correlates with the phenotype.
-
(2005)
Plant Cell
, vol.17
, pp. 1894-1907
-
-
Yasumura, Y.1
Moylan, E.C.2
Langdale, J.A.3
-
48
-
-
33750739518
-
Cloning and characterization of chalcone synthase from the moss, Physcomitrella patens
-
Jiang C., Schommer C.K., Kim S.Y., and Suh D.Y. Cloning and characterization of chalcone synthase from the moss, Physcomitrella patens. Phytochemistry 67 (2006) 2531-2540
-
(2006)
Phytochemistry
, vol.67
, pp. 2531-2540
-
-
Jiang, C.1
Schommer, C.K.2
Kim, S.Y.3
Suh, D.Y.4
-
49
-
-
33846045311
-
The cellulose synthase (CESA) gene superfamily of the moss Physcomitrella patens
-
Roberts A.W., and Bushoven J.T. The cellulose synthase (CESA) gene superfamily of the moss Physcomitrella patens. Plant Mol Biol 63 (2006) 207-219
-
(2006)
Plant Mol Biol
, vol.63
, pp. 207-219
-
-
Roberts, A.W.1
Bushoven, J.T.2
-
50
-
-
33749137053
-
The monosaccharide transporter gene family in land plants in ancient and shows differential subfamily expression and expansion across lineages
-
Johnson D.A., Hill J.P., and Thomas M.A. The monosaccharide transporter gene family in land plants in ancient and shows differential subfamily expression and expansion across lineages. BMC Evol Biol 6 (2006) 64
-
(2006)
BMC Evol Biol
, vol.6
, pp. 64
-
-
Johnson, D.A.1
Hill, J.P.2
Thomas, M.A.3
-
51
-
-
33646260701
-
Genes for the peptidoglycan synthesis pathway are essential for chloroplast division in moss
-
Arabidopsis has five genes encoding peptidoglycan biosynthesis, but their function is unknown. P. patens has nine homologs, and using TGR, the PpMurE and PpPbp genes were disrupted independently. PpMurE disruption leads to the production of macrochloroplasts that undergo division when cells divide. GFP-fused PpMurE is targeted to the stroma, similar to its bacterial counterpart that is cytosolic in Escherichia coli. TGR of PpPbp also results in the production of macrochloroplasts that do not divide.
-
Machida M., Takechi K., Sato H., Chung S.J., Kuroiwa H., Takio S., Seki M., Shinozaki K., Fujita T., Hasebe M., et al. Genes for the peptidoglycan synthesis pathway are essential for chloroplast division in moss. Proc Natl Acad Sci USA 103 (2006) 6753-6758. Arabidopsis has five genes encoding peptidoglycan biosynthesis, but their function is unknown. P. patens has nine homologs, and using TGR, the PpMurE and PpPbp genes were disrupted independently. PpMurE disruption leads to the production of macrochloroplasts that undergo division when cells divide. GFP-fused PpMurE is targeted to the stroma, similar to its bacterial counterpart that is cytosolic in Escherichia coli. TGR of PpPbp also results in the production of macrochloroplasts that do not divide.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 6753-6758
-
-
Machida, M.1
Takechi, K.2
Sato, H.3
Chung, S.J.4
Kuroiwa, H.5
Takio, S.6
Seki, M.7
Shinozaki, K.8
Fujita, T.9
Hasebe, M.10
-
52
-
-
23944446539
-
Organization and expression of the GSK3/Shaggy kinase gene family in the moss Physcomitrella patens suggest early gene multiplication in land plants and an ancestral response to osmotic stress
-
Richard O., Paquet N., Haudecoeur E., and Charrier B. Organization and expression of the GSK3/Shaggy kinase gene family in the moss Physcomitrella patens suggest early gene multiplication in land plants and an ancestral response to osmotic stress. J Mol Evol 61 (2005) 99-113
-
(2005)
J Mol Evol
, vol.61
, pp. 99-113
-
-
Richard, O.1
Paquet, N.2
Haudecoeur, E.3
Charrier, B.4
-
53
-
-
20144380171
-
The family of CONSTANS-like genes in Physcomitrella patens
-
Zobell O., Coupland G., and Reiss B. The family of CONSTANS-like genes in Physcomitrella patens. Plant Biol 7 (2005) 266-275
-
(2005)
Plant Biol
, vol.7
, pp. 266-275
-
-
Zobell, O.1
Coupland, G.2
Reiss, B.3
-
54
-
-
12444320409
-
Germin-like protein gene family of a moss, Physcomitrella patens, phylogenetically falls into two characteristic new clades
-
Nakata M., Watanabe Y., Sakurai Y., Hashimoto Y., Matsuzaki M., Takahashi Y., and Satoh T. Germin-like protein gene family of a moss, Physcomitrella patens, phylogenetically falls into two characteristic new clades. Plant Mol Biol 56 (2004) 381-395
-
(2004)
Plant Mol Biol
, vol.56
, pp. 381-395
-
-
Nakata, M.1
Watanabe, Y.2
Sakurai, Y.3
Hashimoto, Y.4
Matsuzaki, M.5
Takahashi, Y.6
Satoh, T.7
-
55
-
-
0032516067
-
Plant nuclear gene knockout reveals a role in plastid division for the homolog of the bacterial cell division protein FtsZ, an ancestral tubulin
-
Strepp R., Scholz S., Kruse S., Speth V., and Reski R. Plant nuclear gene knockout reveals a role in plastid division for the homolog of the bacterial cell division protein FtsZ, an ancestral tubulin. Proc Natl Acad Sci USA 95 (1998) 4368-4373
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 4368-4373
-
-
Strepp, R.1
Scholz, S.2
Kruse, S.3
Speth, V.4
Reski, R.5
|